genome.fa.s8.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  32  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14462808--14462850	19	2.4	19	88	7	63	51	11	11	25	1.72
14462817--14462855	19	2.0	20	95	5	71	46	15	12	25	1.81
14464141--14464171	16	1.9	16	93	0	53	0	19	0	80	0.71
14464137--14464180	20	2.2	20	92	8	72	0	22	0	77	0.77
14470048--14470092	22	2.2	21	84	11	58	51	11	8	28	1.68
14478147--14478204	29	1.9	30	86	6	82	44	15	12	27	1.82
14478161--14478217	29	2.0	29	85	0	78	45	19	14	21	1.85
14481309--14481333	13	1.9	13	100	0	50	48	8	0	44	1.32
14482477--14482529	28	1.9	27	88	3	79	22	24	22	30	1.99
14482710--14482747	19	2.0	19	89	0	58	42	26	2	28	1.69
14485391--14485439	19	2.7	18	84	9	55	55	0	0	44	0.99
14489181--14489377	97	2.0	98	91	1	315	28	14	20	36	1.92
14493654--14493719	33	2.0	33	96	0	123	39	21	10	28	1.86
14500066--14500090	2	12.5	2	100	0	50	52	0	0	48	1.00
14515452--14515520	28	2.5	28	79	9	70	31	2	2	62	1.25
14516831--14516863	15	2.1	16	88	11	50	60	6	0	33	1.21
14517133--14517172	21	1.9	21	89	0	62	42	5	2	50	1.37
14525996--14526039	2	22.5	2	95	4	81	50	0	0	50	1.00
14527780--14527877	47	2.1	47	84	5	128	24	9	3	63	1.39
14528318--14528381	33	1.9	33	90	0	101	64	0	6	29	1.18
14528343--14528399	20	2.9	21	79	7	57	59	0	8	31	1.28
14528599--14528639	15	2.7	16	77	11	50	34	19	0	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14529717--14529782	27	2.4	28	82	5	80	45	1	3	50	1.26
14529846--14529909	35	1.9	33	81	15	78	46	4	1	46	1.33
14529713--14530007	114	2.6	113	81	9	299	53	2	3	40	1.33
14530577--14530629	25	2.1	25	89	6	81	37	9	33	18	1.83
14535310--14535352	21	2.0	23	86	9	63	13	20	2	62	1.42
14541762--14541843	33	2.4	33	81	4	83	25	12	31	30	1.92
14554674--14554716	22	2.0	22	90	0	68	65	4	4	25	1.32
14556165--14556226	18	3.1	18	72	24	52	27	3	0	69	1.04
14557002--14557077	23	3.3	23	98	0	143	32	13	0	53	1.39
14558056--14558085	13	2.3	13	100	0	60	73	13	0	13	1.10
14564515--14564561	24	2.0	24	84	16	62	70	0	27	2	0.99
14567803--14567829	14	1.9	14	100	0	54	59	11	0	29	1.32
14570977--14571019	2	21.5	2	100	0	86	51	0	0	48	1.00
14587229--14587254	2	13.0	2	100	0	52	0	50	0	50	1.00
14589988--14590167	82	2.2	81	87	6	258	68	6	7	16	1.35
14591104--14591280	92	1.9	92	90	0	282	38	12	28	20	1.89
14592443--14592476	16	2.1	16	88	0	50	11	2	2	82	0.89
14604569--14604597	13	2.2	13	100	0	58	27	27	6	37	1.82
14616293--14616487	100	2.0	96	92	6	320	48	5	5	39	1.50
14616906--14616933	6	4.7	6	100	0	56	46	0	53	0	1.00
14638563--14638602	21	1.9	21	89	0	62	42	12	0	45	1.42
14638678--14638742	31	2.1	31	97	0	121	60	4	3	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14638728--14638785	29	2.0	29	86	6	82	63	0	5	31	1.16
14641072--14641112	1	41.0	1	100	0	82	0	100	0	0	0.00
14644728--14644762	2	17.5	2	87	0	52	42	0	0	57	0.99
14652072--14652139	33	2.1	33	97	0	127	35	22	8	33	1.85
14657345--14657435	45	2.0	44	95	2	164	14	41	25	17	1.87
14658633--14658733	50	2.0	50	94	0	175	40	15	16	26	1.89
14664213--14664287	27	2.8	27	97	0	141	46	14	10	28	1.78
14668498--14668531	17	2.0	17	88	0	50	29	0	0	70	0.87
14669583--14669610	2	14.0	2	100	0	56	50	0	50	0	1.00
14674242--14674305	33	1.9	33	100	0	128	42	10	25	21	1.85
14687562--14687604	21	2.0	22	82	13	54	48	0	6	44	1.29
14687623--14687692	22	3.1	22	76	15	63	54	0	1	44	1.09
14688023--14688085	30	2.1	30	82	2	74	46	0	4	49	1.23
14688993--14689033	20	2.0	22	85	9	59	39	0	2	58	1.11
14692506--14692570	30	2.1	31	91	5	105	30	15	20	33	1.93
14693662--14693780	22	5.4	22	71	6	89	21	11	23	43	1.85
14693671--14693779	44	2.5	44	79	7	130	22	12	22	43	1.87
14693739--14693802	23	2.8	23	83	2	67	21	9	23	45	1.81
14696722--14696759	19	2.0	19	89	0	58	28	0	31	39	1.57
14700835--14700868	16	2.1	17	88	5	52	23	2	35	38	1.70
14701531--14701576	19	2.4	20	82	10	60	54	0	2	43	1.12
14705592--14705667	38	2.0	38	100	0	152	26	34	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14716086--14716122	16	2.2	17	86	13	51	37	27	0	35	1.57
14718176--14718279	53	2.0	53	94	0	181	28	20	24	26	1.99
14720045--14720097	2	29.0	2	82	17	71	49	0	0	50	1.00
14720010--14720051	22	2.0	21	86	13	61	30	14	0	52	1.41
14720554--14720588	18	1.9	18	94	0	61	17	31	11	40	1.85
14720556--14720596	18	2.3	18	86	0	55	17	36	12	34	1.87
14732119--14732150	13	2.5	13	100	0	64	6	9	21	62	1.47
14732640--14732677	15	2.5	15	91	0	58	28	2	15	52	1.56
14739572--14739625	2	27.0	2	96	0	99	51	0	0	48	1.00
14741714--14741751	19	2.0	19	89	0	58	26	0	28	44	1.54
14741915--14741978	30	2.2	29	83	5	76	31	7	20	40	1.81
14743134--14743160	13	2.1	13	100	0	54	44	0	7	48	1.31
14749185--14749237	28	1.9	27	88	3	79	28	22	18	30	1.98
14749282--14749327	20	2.3	20	88	7	67	45	17	4	32	1.68
14750605--14750688	25	3.2	25	77	5	87	25	26	20	28	1.99
14757076--14757108	17	1.9	17	88	11	50	84	0	12	3	0.72
14757493--14757533	19	2.1	20	82	13	50	60	2	9	26	1.40
14757867--14757926	30	2.1	30	81	6	70	31	5	21	41	1.75
14769196--14769256	25	2.3	28	88	8	92	44	22	4	27	1.74
14769205--14769359	78	2.0	78	92	4	264	35	23	6	34	1.81
14785705--14785836	65	2.0	65	88	2	194	39	10	16	33	1.83
14785880--14786150	58	4.7	58	82	3	287	37	11	13	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14785775--14786133	115	3.1	115	78	5	346	36	11	14	36	1.84
14788419--14788465	20	2.3	21	81	3	60	51	0	8	40	1.33
14790965--14791008	21	2.0	22	86	4	63	31	0	4	63	1.14
14793105--14793129	4	6.2	4	100	0	50	76	0	0	24	0.80
14793811--14793890	30	2.7	30	82	7	108	32	13	17	36	1.89
14794418--14794460	20	2.3	19	84	8	52	67	6	11	13	1.41
14796697--14796743	25	1.9	24	86	4	67	14	19	10	55	1.68
14797669--14797716	21	2.3	21	88	0	69	25	18	27	29	1.98
14799214--14799256	21	2.1	20	86	4	59	72	2	6	18	1.19
14799437--14799465	5	5.8	5	100	0	58	58	0	0	41	0.98
14799916--14799947	2	16.0	2	100	0	64	0	50	0	50	1.00
14801308--14801468	83	1.9	83	96	0	295	26	11	18	44	1.84
14801318--14801449	43	3.1	43	67	22	125	27	11	17	43	1.83
14812291--14812329	2	19.5	2	100	0	78	51	0	0	48	1.00
14812753--14812850	31	3.1	33	75	20	82	54	2	0	43	1.12
14812795--14812846	19	2.8	18	79	5	59	57	1	0	40	1.10
14820338--14820375	18	2.1	19	85	5	51	55	0	5	39	1.23
14820923--14821079	82	1.9	82	96	0	287	49	5	15	29	1.68
14821596--14821649	27	2.0	27	92	0	90	20	25	18	35	1.95
14821527--14821727	104	1.9	104	84	2	269	23	18	16	41	1.90
14821945--14821993	26	1.9	25	88	12	73	67	6	2	24	1.24
14822932--14823010	31	2.6	30	73	11	81	64	2	1	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14824604--14824638	18	2.0	18	88	5	54	42	17	5	34	1.73
14830862--14830930	24	2.9	24	91	0	102	43	24	14	17	1.86
14830866--14830943	24	3.2	24	85	0	66	43	23	14	19	1.87
14830955--14831013	24	2.5	24	80	0	73	44	18	13	23	1.86
14831014--14831063	24	2.1	24	100	0	100	42	26	16	16	1.88
14831077--14831218	26	5.2	26	72	18	92	42	14	9	33	1.78
14831155--14831248	29	3.1	30	81	4	109	41	12	7	38	1.72
14836375--14836483	54	2.0	54	100	0	218	48	3	20	27	1.66
14838052--14838306	127	2.0	127	96	1	458	29	12	8	49	1.70
14838507--14838649	51	2.8	48	76	8	124	35	7	15	41	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50