genome.fa.s8.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  26  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11614168--11614265	10	9.2	11	68	22	50	67	1	0	31	0.98
11614185--11614259	27	2.8	26	81	4	96	64	1	0	34	1.02
11623127--11623182	22	2.5	22	94	0	103	25	28	25	21	1.99
11623425--11623472	2	24.0	2	100	0	96	50	0	0	50	1.00
11625720--11625744	13	1.9	13	100	0	50	48	8	0	44	1.32
11633584--11633626	16	2.7	16	96	0	77	25	2	44	27	1.66
11633729--11633828	37	2.7	36	80	4	119	11	15	24	50	1.75
11649513--11649558	17	2.6	17	86	6	65	34	8	0	56	1.30
11652535--11652955	45	9.4	43	72	10	211	39	6	9	43	1.63
11652560--11652963	223	1.8	225	87	3	618	38	6	10	44	1.64
11657555--11657579	9	2.8	9	100	0	50	48	8	20	24	1.76
11658855--11658896	19	2.3	19	91	4	68	28	0	28	42	1.56
11664778--11664839	28	2.2	28	91	0	97	27	4	14	53	1.61
11665540--11665593	20	2.7	19	72	8	54	46	5	14	33	1.68
11669314--11669368	14	3.7	14	79	11	56	63	9	1	25	1.34
11669314--11669368	15	3.7	15	78	7	58	63	9	1	25	1.34
11676205--11676245	21	2.0	21	95	0	73	36	14	12	36	1.84
11693090--11693114	2	12.5	2	100	0	50	0	0	48	52	1.00
11704921--11704961	15	2.7	15	84	3	55	73	2	24	0	0.96
11710314--11710454	47	3.0	47	81	4	176	26	15	33	24	1.95
11710388--11710535	70	2.1	70	83	5	192	25	17	31	25	1.97
11710458--11710704	47	5.3	47	83	3	286	26	18	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11710355--11710571	117	1.9	117	86	3	312	26	14	33	25	1.94
11710695--11710847	52	3.0	52	85	0	209	28	20	26	25	1.99
11711351--11711575	31	7.3	31	85	2	281	24	16	22	36	1.95
11713762--11713934	31	5.6	31	84	2	222	23	16	19	40	1.91
11717775--11717857	31	2.7	31	83	3	87	33	24	15	26	1.95
11717911--11718254	55	6.3	55	83	0	247	43	31	12	12	1.80
11717904--11718254	110	3.2	109	77	3	344	43	31	12	12	1.80
11717936--11718247	165	1.9	164	82	4	385	41	33	12	12	1.80
11718470--11718636	63	2.7	63	90	1	264	31	17	28	22	1.97
11730411--11730435	13	1.9	13	100	0	50	48	8	0	44	1.32
11735767--11735806	5	8.0	5	91	0	62	37	22	0	40	1.54
11735852--11735893	15	2.8	15	88	0	66	57	14	2	26	1.50
11737287--11737311	13	1.9	13	100	0	50	48	8	0	44	1.32
11738433--11738484	28	1.9	27	84	7	70	28	21	19	30	1.97
11743876--11743929	21	2.7	19	80	5	54	24	1	11	62	1.37
11745956--11746119	69	2.4	69	88	1	240	59	2	34	4	1.30
11746205--11746247	2	22.5	2	90	9	72	51	0	0	48	1.00
11746740--11747005	60	4.4	60	88	0	379	27	18	31	22	1.97
11746739--11747039	60	5.0	60	85	5	369	26	18	31	23	1.97
11749243--11749640	199	2.0	198	98	0	769	33	17	23	25	1.96
11751828--11751878	12	4.1	12	84	5	57	66	1	31	0	1.03
11751932--11752109	12	15.2	12	67	15	61	64	1	30	3	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11751930--11752110	70	2.6	69	82	6	197	64	1	30	3	1.20
11752056--11752110	12	4.6	13	78	17	66	76	0	23	0	0.79
11752071--11752106	6	5.8	6	96	3	63	80	0	19	0	0.71
11751931--11752155	69	3.2	69	77	9	174	62	2	32	3	1.23
11752084--11752262	87	2.1	88	95	2	326	59	5	28	5	1.42
11752446--11752502	2	30.0	2	86	10	84	49	0	1	49	1.11
11752443--11752502	21	3.1	20	88	11	90	50	0	1	48	1.11
11752451--11752502	21	2.5	21	96	0	95	48	0	1	50	1.12
11752865--11753104	60	4.0	60	85	2	268	25	17	31	24	1.97
11752866--11753105	120	2.0	120	82	3	295	25	17	31	25	1.97
11754086--11754126	20	2.0	20	95	0	73	43	14	0	41	1.45
11757937--11758042	38	2.7	40	77	2	117	24	37	16	21	1.93
11758928--11758966	19	2.1	19	85	9	53	41	12	33	12	1.82
11767953--11768073	60	2.0	60	90	0	188	28	21	10	38	1.87
11771812--11771897	43	2.0	43	93	0	145	27	15	11	45	1.80
11779446--11779489	21	2.2	19	84	8	52	52	0	2	45	1.13
11779820--11779878	30	2.0	30	89	0	91	47	16	1	33	1.57
11779829--11779888	30	2.0	30	83	3	77	53	11	1	33	1.47
11782914--11782947	13	2.6	13	86	13	52	73	5	2	17	1.16
11794440--11794924	243	2.0	243	94	0	846	27	11	15	45	1.80
11799811--11799899	42	2.1	42	89	0	133	25	31	19	23	1.98
11815046--11815080	3	11.7	3	93	0	61	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11816672--11816769	34	2.9	33	83	3	115	26	13	26	33	1.93
11819674--11819886	42	5.0	42	85	0	237	25	20	33	20	1.97
11827267--11827303	12	2.8	13	88	12	58	70	0	21	8	1.13
11833754--11833795	22	1.9	22	85	9	59	54	7	16	21	1.65
11837533--11837571	21	1.9	20	89	5	60	35	7	10	46	1.67
11840975--11841016	21	2.1	20	83	16	52	59	7	0	33	1.25
11843374--11843433	25	2.4	25	85	0	66	25	30	16	28	1.97
11844927--11845035	32	3.3	32	76	12	121	35	25	14	23	1.93
11844904--11845075	67	2.6	67	86	5	233	34	25	13	26	1.93
11858694--11858733	19	2.2	18	86	4	53	22	27	22	27	1.99
11859353--11859396	2	22.0	2	85	0	52	47	4	2	45	1.35
11859694--11860058	183	2.0	182	100	0	721	40	8	31	19	1.82
11860027--11860060	17	1.9	18	94	5	61	38	5	35	20	1.77
11865320--11865468	35	4.5	32	76	15	140	36	26	12	24	1.91
11865293--11865468	67	2.6	67	88	3	257	35	26	12	25	1.91
11866709--11866987	142	2.0	140	99	0	540	35	16	8	38	1.80
11868039--11868214	67	2.6	67	86	3	239	36	27	10	25	1.88
11868066--11868194	32	3.9	32	77	18	113	36	27	10	26	1.88
11868066--11868217	35	4.6	34	75	11	127	38	28	10	23	1.88
11868637--11868821	73	2.5	73	85	3	230	22	17	17	42	1.89
11871615--11871759	74	2.0	74	80	5	168	17	20	19	42	1.89
11874284--11874340	29	2.0	29	82	0	69	47	8	28	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11874314--11874384	29	2.4	30	79	6	83	39	8	30	21	1.83
11874572--11874661	35	2.6	35	81	0	99	24	20	12	43	1.85
11874830--11874893	15	4.2	15	72	4	65	46	20	6	26	1.74
11882525--11882571	23	2.0	23	95	0	85	53	10	17	19	1.72
11883612--11883681	29	2.4	28	81	6	77	51	8	22	17	1.72
11897676--11897812	35	3.9	35	91	5	224	44	20	13	21	1.86
11903232--11903270	21	1.9	20	84	5	51	46	5	12	35	1.65
11903211--11903336	61	2.1	60	87	1	180	40	15	12	30	1.85
11906872--11906933	18	3.3	18	70	22	56	38	0	3	58	1.15
11907114--11907343	112	2.1	110	87	3	336	33	14	13	38	1.86
11908880--11908951	33	2.2	33	78	7	76	52	2	4	40	1.35
11908915--11908976	25	2.5	25	97	0	115	53	4	6	35	1.48
11909989--11910036	19	2.5	20	80	19	57	43	0	10	45	1.38
11914795--11914862	34	2.0	34	100	0	136	41	5	20	32	1.76
11920755--11920828	2	38.0	2	77	10	73	43	2	2	51	1.30
11921698--11921735	19	2.0	19	94	0	67	28	0	28	42	1.56
11931859--11931896	19	2.0	19	94	0	67	28	0	28	42	1.56
11933274--11933298	13	1.9	13	100	0	50	44	0	8	48	1.32
11936841--11936921	38	2.1	39	90	2	128	41	16	12	29	1.84
11948771--11948825	17	3.3	17	78	16	62	23	3	0	72	1.00
11950816--11950857	2	22.5	2	83	13	54	45	2	0	52	1.13
11950809--11950853	9	5.1	9	84	10	58	44	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11950809--11950857	22	2.5	19	81	18	64	44	2	0	53	1.12
11951280--11951323	20	2.2	20	84	8	54	40	22	13	22	1.89
11951430--11951486	28	2.0	28	96	0	105	38	0	1	59	1.08
11952459--11952659	73	2.8	73	90	0	303	24	22	15	37	1.93
11964296--11964334	18	2.2	18	86	9	53	0	17	12	69	1.19
11973264--11973288	13	1.9	13	100	0	50	16	4	48	32	1.64
11974099--11974166	21	3.2	21	85	0	91	26	17	22	33	1.96
11981507--11981616	36	3.1	35	78	12	100	29	32	13	24	1.93
11993740--11993906	43	4.0	43	84	2	214	24	33	14	27	1.94
11997934--11997987	21	2.6	21	77	11	65	29	0	1	68	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50