genome.fa.s8.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  45  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18693783--18693847	23	2.8	22	79	9	76	29	7	32	30	1.85
18693632--18693801	93	1.8	93	84	0	232	27	13	34	24	1.93
18693958--18694041	23	3.7	23	68	15	57	26	16	33	23	1.96
18694022--18694093	23	3.1	23	83	0	99	27	19	23	29	1.98
18693632--18694041	209	2.0	209	80	1	464	28	13	32	24	1.93
18694637--18694797	87	1.9	87	85	2	225	25	13	29	32	1.93
18694808--18694916	31	3.6	30	78	3	101	30	16	18	34	1.93
18696430--18696737	151	2.0	151	84	2	395	32	17	18	32	1.94
18696464--18696868	151	2.6	150	79	6	384	32	16	16	33	1.92
18699187--18699247	31	2.0	31	90	0	95	32	36	9	21	1.86
18699106--18699326	107	2.1	106	86	2	300	29	28	16	25	1.97
18699211--18699355	75	1.9	76	85	1	202	31	24	16	27	1.96
18703184--18703357	23	7.7	23	77	6	142	35	20	11	33	1.88
18703184--18703282	45	2.2	44	82	7	110	36	18	11	34	1.86
18704406--18704455	17	3.2	16	80	11	59	42	2	0	56	1.11
18704763--18704815	21	2.5	21	84	9	63	45	7	1	45	1.42
18704951--18705007	2	30.0	2	75	16	50	49	3	1	45	1.29
18728068--18728104	19	1.9	19	100	0	74	43	29	0	27	1.55
18730735--18730772	19	2.0	19	94	0	67	28	0	28	42	1.56
18734915--18734952	19	2.0	19	94	0	67	28	0	28	42	1.56
18736185--18736209	13	1.9	13	100	0	50	44	0	8	48	1.32
18741099--18741128	13	2.4	13	94	5	53	36	23	0	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18741598--18741670	27	2.7	26	79	12	67	28	5	1	64	1.24
18741607--18741670	27	2.3	27	82	12	69	29	4	0	65	1.13
18742753--18744708	652	3.0	652	95	0	3524	38	11	17	33	1.85
18745302--18745368	35	1.9	35	84	0	89	34	14	20	29	1.93
18766298--18766336	2	19.5	2	100	0	78	48	0	0	51	1.00
18765797--18766884	543	2.0	544	99	0	2153	35	16	13	33	1.88
18766843--18766881	2	19.5	2	100	0	78	48	0	0	51	1.00
18773692--18773793	33	3.1	32	80	8	107	21	14	26	37	1.92
18780001--18780038	19	2.0	19	94	0	67	42	28	0	28	1.56
18791123--18791214	26	3.4	26	72	8	94	30	13	21	34	1.91
18791088--18791316	102	2.2	102	86	4	302	27	11	22	38	1.89
18791863--18791922	30	2.0	30	96	0	111	23	13	31	31	1.93
18792551--18792960	109	3.6	110	81	6	416	17	11	27	43	1.83
18792756--18793010	118	2.2	117	78	6	291	18	11	29	41	1.85
18797199--18797265	26	2.6	26	88	2	91	40	25	11	22	1.88
18797254--18797307	21	2.6	21	82	11	58	31	20	24	24	1.98
18797441--18797477	17	2.1	18	85	14	51	78	0	18	2	0.87
18797432--18797478	24	2.0	24	83	8	60	76	2	17	4	1.04
18801646--18801706	26	2.5	23	80	17	77	59	6	13	21	1.57
18801653--18801705	26	2.0	26	96	0	97	58	7	13	20	1.59
18803239--18803292	24	2.3	23	81	9	63	20	29	18	31	1.96
18803276--18803399	45	2.8	45	81	2	151	24	29	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18809337--18809369	11	3.0	11	90	0	57	21	0	6	72	1.05
18812081--18812148	29	2.4	29	85	2	84	51	4	38	5	1.46
18824719--18824765	15	3.1	15	78	3	58	53	10	2	34	1.48
18826149--18826173	13	1.9	13	100	0	50	48	8	0	44	1.32
18829478--18829504	12	2.2	12	100	0	54	29	29	11	29	1.91
18833369--18833423	21	2.6	21	91	0	83	20	20	21	38	1.94
18839208--18839254	22	2.1	23	84	11	62	48	17	6	27	1.71
18853730--18853780	26	2.0	25	92	0	75	50	0	1	45	1.12
18864537--18864574	19	2.0	20	90	10	62	23	7	52	15	1.69
18867797--18867851	29	1.9	29	88	3	85	40	16	18	25	1.91
18878560--18878602	21	2.0	21	81	0	50	30	9	34	25	1.87
18886999--18887039	21	2.1	19	86	9	55	60	9	0	29	1.28
18890710--18890829	40	3.0	40	91	0	195	42	21	12	23	1.87
18894964--18895004	21	2.1	19	86	9	55	60	9	0	29	1.28
18895816--18895864	21	2.4	21	77	16	57	28	24	14	32	1.94
18899254--18899308	23	2.4	23	81	6	67	27	21	36	14	1.93
18901255--18901287	16	2.0	17	88	5	50	60	12	9	18	1.57
18902397--18902429	17	1.9	17	88	11	50	42	15	3	39	1.62
18902589--18902788	28	7.0	27	79	12	152	37	11	9	42	1.72
18902601--18902800	57	3.5	57	85	3	240	36	12	9	41	1.75
18902601--18902800	29	7.0	28	80	6	213	36	12	9	41	1.75
18907289--18907406	50	2.4	48	85	5	155	33	20	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18914657--18914690	16	2.1	16	100	0	68	47	14	17	20	1.83
18921993--18922033	2	20.5	2	94	0	73	46	0	2	51	1.14
18927431--18927605	42	4.1	42	84	5	237	26	33	16	24	1.96
18927431--18927607	84	2.1	85	89	5	270	26	32	16	24	1.96
18930216--18930306	47	1.9	47	93	0	155	29	16	30	23	1.96
18931398--18931475	36	2.2	36	88	0	111	21	30	15	32	1.94
18932714--18933281	283	2.0	283	87	0	805	30	13	22	33	1.93
18934008--18934042	12	2.8	13	91	4	54	48	8	0	42	1.33
18947088--18947146	2	30.0	2	89	3	93	47	0	1	50	1.11
18947768--18947806	2	19.5	2	100	0	78	48	0	0	51	1.00
18951652--18951787	69	2.0	68	82	4	166	36	20	16	25	1.94
18955241--18955418	81	2.2	80	82	2	212	32	25	18	23	1.97
18956447--18956495	21	2.3	21	100	0	98	28	16	20	34	1.94
18967811--18967915	39	2.8	37	80	16	119	32	10	24	32	1.89
18968721--18968783	26	2.4	27	89	5	92	52	15	6	25	1.66
18969468--18969505	19	2.0	19	100	0	76	42	31	5	21	1.75
18975077--18975126	12	4.2	12	75	15	50	22	10	2	66	1.32
18975080--18975125	22	2.0	23	87	4	67	23	8	2	65	1.32
18981283--18981315	13	2.8	12	90	9	50	3	21	0	75	0.93
18982929--18982992	30	2.1	30	94	0	110	35	14	20	29	1.92
18983088--18983136	16	3.4	15	73	26	52	71	8	2	18	1.21
18983080--18983136	27	2.1	27	90	6	89	70	8	1	19	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18991566--18991702	68	2.0	66	84	5	177	35	8	23	32	1.85
18997508--18997563	19	2.8	20	83	8	69	32	21	0	46	1.52
18997663--18997701	20	2.0	20	84	0	51	20	2	0	76	0.90
18997637--18997705	15	4.5	15	74	17	54	20	2	0	76	0.91
19005099--19005143	18	2.3	21	85	11	60	44	2	2	51	1.26
19005391--19005651	129	2.0	129	90	0	405	22	17	31	27	1.97
19009521--19009671	65	2.3	64	76	8	153	33	12	20	33	1.90
19018819--19018868	26	1.9	26	91	0	82	52	2	28	18	1.56
19018882--19019091	113	1.9	113	83	6	273	42	22	17	17	1.89
19019008--19019287	105	2.6	107	74	11	245	43	22	16	18	1.88
19021593--19021637	22	2.0	22	83	8	56	60	2	0	37	1.09
19021728--19021848	62	2.0	62	88	0	179	46	11	5	36	1.64
19024163--19024252	35	2.5	34	82	10	99	57	12	1	28	1.42
19024762--19025163	133	3.0	133	87	0	581	25	15	44	13	1.84
19026500--19026550	17	2.9	17	80	8	50	47	1	5	45	1.38
19029314--19029345	2	16.0	2	100	0	64	50	0	0	50	1.00
19030774--19030855	35	2.4	35	89	2	121	23	41	9	25	1.85
19032810--19032850	21	1.9	22	90	5	66	65	0	0	34	0.93
19038043--19038067	13	1.9	13	100	0	50	48	8	0	44	1.32
19042932--19043057	63	2.0	63	100	0	252	33	20	9	36	1.85
19043773--19043807	5	7.0	5	93	0	61	37	20	0	42	1.52
19043853--19043894	15	2.8	15	88	0	66	57	14	2	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19045282--19045306	13	1.9	13	100	0	50	48	8	0	44	1.32
19047966--19048082	42	2.8	42	92	0	198	23	33	19	23	1.97
19048655--19048694	19	2.1	19	100	0	80	40	10	30	20	1.85
19052299--19052349	18	2.7	19	96	3	95	45	0	0	54	0.99
19059332--19059379	20	2.4	20	86	6	71	70	0	8	20	1.12
19061417--19061508	45	2.0	45	91	4	150	32	8	2	56	1.42
19065379--19065404	2	13.0	2	100	0	52	0	50	0	50	1.00
19087351--19087456	53	2.0	53	94	0	185	39	12	15	33	1.84
19088571--19088626	23	2.5	23	85	8	71	55	1	1	41	1.21
19092310--19092351	15	2.6	17	77	11	52	45	9	0	45	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50