genome.fa.s8.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  22  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10107339--10107406	14	5.0	13	75	13	66	70	0	1	27	0.96
10107498--10107563	18	3.3	20	72	21	59	75	0	3	21	0.93
10122315--10122350	18	1.9	19	88	5	56	72	0	2	25	0.98
10122450--10122512	12	5.0	12	77	21	58	76	0	3	20	0.93
10122450--10122513	27	2.4	26	75	12	67	75	0	3	21	0.95
10122489--10122519	15	2.1	15	93	0	53	77	0	0	22	0.77
10126744--10126780	2	18.5	2	89	10	58	48	0	2	48	1.15
10127977--10128053	23	3.3	23	68	10	66	27	19	29	23	1.98
10127966--10128073	47	2.3	47	90	0	171	24	17	31	26	1.97
10128754--10129019	31	8.5	31	85	1	327	26	17	16	38	1.91
10128754--10129019	94	2.8	93	87	1	372	26	17	16	38	1.91
10130427--10130745	145	2.2	146	81	5	369	30	21	17	29	1.97
10132867--10133113	118	2.1	118	83	4	329	29	27	21	22	1.99
10137001--10137091	31	2.9	31	90	3	130	38	18	15	27	1.91
10138152--10138295	72	2.0	72	97	0	270	34	15	6	43	1.72
10138216--10138256	19	2.1	20	86	4	57	36	12	4	46	1.63
10154382--10154452	33	2.2	33	89	0	106	22	26	15	35	1.94
10167161--10167202	21	2.0	22	85	4	59	38	11	7	42	1.69
10168955--10169020	23	3.0	21	78	12	71	51	1	3	43	1.26
10168978--10169257	155	1.8	155	82	6	361	52	2	3	42	1.31
10169192--10169286	42	2.2	43	83	10	124	51	2	2	44	1.25
10169515--10169583	30	2.3	29	80	9	77	49	1	2	46	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10169518--10169564	15	3.1	15	82	14	60	51	2	2	44	1.25
10169534--10169584	22	2.4	22	80	9	61	50	0	1	47	1.12
10169587--10169620	16	2.1	16	89	10	52	58	0	0	41	0.98
10169588--10169665	25	3.1	25	76	14	72	55	0	1	43	1.08
10169618--10169672	14	4.1	14	79	15	71	52	0	1	45	1.11
10169602--10169670	25	2.8	25	85	10	88	55	0	1	43	1.08
10169661--10169710	27	2.0	26	84	11	68	46	4	2	48	1.32
10174025--10174051	14	1.9	14	100	0	54	0	0	14	85	0.61
10215907--10215984	22	3.6	22	72	18	74	47	3	0	48	1.20
10215898--10215971	26	3.1	25	76	18	77	41	2	0	55	1.14
10215901--10216031	42	3.1	42	81	7	133	42	2	1	53	1.22
10216389--10216432	23	1.9	23	86	9	63	45	0	0	54	0.99
10222471--10222593	42	2.9	42	92	0	210	21	21	33	22	1.97
10222828--10222889	26	2.4	26	94	0	106	24	3	40	32	1.71
10231563--10231603	20	2.0	20	95	0	73	43	14	0	41	1.45
10234128--10234250	36	3.4	36	79	0	120	45	18	22	13	1.84
10235959--10236108	73	2.0	74	83	3	187	28	16	4	50	1.65
10240759--10240837	22	3.6	22	72	6	63	22	11	18	46	1.81
10240856--10241052	26	8.2	25	76	14	175	35	24	14	25	1.93
10240919--10241119	47	4.3	47	77	12	178	36	24	14	24	1.93
10240872--10241076	95	2.2	95	90	0	320	34	24	15	25	1.94
10241041--10241134	21	4.2	21	76	12	98	37	26	14	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10241086--10241141	21	2.7	21	82	0	76	37	23	14	25	1.92
10243708--10243778	14	5.1	13	73	18	54	21	5	0	73	1.04
10243697--10243773	16	4.5	17	75	15	61	25	5	0	68	1.10
10245889--10245945	9	5.8	9	76	17	51	15	5	0	78	0.91
10245904--10245960	15	3.8	15	79	6	62	19	1	0	78	0.83
10246831--10246966	48	2.8	48	93	0	236	24	23	14	37	1.92
10263008--10263033	6	4.3	6	100	0	52	15	0	0	84	0.62
10263409--10263872	87	5.8	75	81	8	347	27	45	8	18	1.78
10263465--10263874	87	5.0	87	82	7	403	28	45	8	18	1.77
10263532--10263679	48	3.3	48	66	26	140	30	50	6	12	1.65
10263654--10263868	36	5.7	36	76	9	223	26	42	9	21	1.83
10271129--10271162	2	17.0	2	100	0	68	50	0	0	50	1.00
10272262--10272295	2	17.0	2	100	0	68	50	0	0	50	1.00
10282281--10282305	12	2.1	12	100	0	50	32	24	0	44	1.54
10284441--10284465	11	2.3	11	100	0	50	84	0	8	8	0.79
10293554--10293674	26	4.5	26	74	15	102	67	0	1	29	1.06
10293588--10293771	20	9.4	19	63	22	62	70	0	2	26	1.02
10293646--10293767	6	19.3	6	69	15	59	72	0	1	25	0.94
10293646--10293757	40	2.7	44	78	17	114	70	0	1	26	0.97
10293642--10293755	39	2.8	41	82	12	130	71	0	2	25	0.99
10293707--10293765	25	2.4	24	82	2	64	71	0	0	28	0.87
10293688--10293771	30	2.6	31	87	9	116	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10294006--10294048	15	2.9	15	85	0	59	32	18	6	41	1.77
10298842--10298886	24	2.0	22	82	8	54	31	4	0	64	1.13
10311546--10311592	24	2.0	24	84	16	62	23	23	34	19	1.97
10311682--10311714	17	1.9	17	93	0	57	45	18	9	27	1.79
10315922--10315973	20	2.5	20	87	3	68	26	17	19	36	1.94
10315938--10315978	20	2.0	20	90	0	64	29	14	24	31	1.95
10331163--10331209	22	2.1	23	84	11	62	48	19	4	27	1.67
10343484--10343522	16	2.4	18	80	20	50	61	0	0	38	0.96
10343855--10343897	22	1.9	23	85	4	61	41	2	2	53	1.26
10344136--10344213	22	3.5	22	76	10	86	52	3	20	23	1.63
10344094--10344213	45	2.8	45	79	13	135	48	4	20	27	1.67
10344081--10344240	21	7.4	21	77	6	124	46	5	22	25	1.73
10347908--10347964	28	2.0	28	86	6	80	22	19	22	35	1.96
10348455--10348513	21	3.0	20	78	11	59	42	1	28	27	1.65
10349096--10349133	19	2.0	19	94	0	67	28	0	28	42	1.56
10355620--10355777	21	7.4	21	77	8	88	44	3	26	25	1.69
10356587--10356627	21	2.0	21	90	0	64	34	21	19	24	1.97
10356543--10356687	72	2.0	71	81	6	168	41	15	18	24	1.89
10358619--10359090	21	22.6	21	72	7	210	46	4	23	25	1.72
10358674--10359006	41	7.9	44	72	12	205	46	4	24	24	1.72
10359289--10359337	3	16.3	3	95	0	89	65	0	2	32	1.04
10359558--10359598	15	2.6	17	81	14	52	58	2	4	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10360699--10360735	19	1.9	19	100	0	74	27	0	29	43	1.55
10361901--10361925	13	1.9	13	100	0	50	44	0	8	48	1.32
10363589--10363644	25	2.3	24	85	11	78	41	30	3	25	1.72
10370045--10370085	15	2.7	15	82	17	50	75	14	2	7	1.12
10370760--10370824	30	2.2	29	81	5	69	30	6	18	44	1.74
10375023--10375047	13	1.9	13	100	0	50	48	8	0	44	1.32
10380005--10380095	5	18.8	5	93	6	161	40	20	0	38	1.53
10380005--10380095	24	3.8	24	98	1	173	40	20	0	38	1.53
10380005--10380095	29	3.1	30	92	7	161	40	20	0	38	1.53
10380129--10380174	15	3.1	15	90	0	74	56	15	2	26	1.50
10381375--10381399	13	1.9	13	100	0	50	48	8	0	44	1.32
10395201--10395238	20	1.9	20	100	0	76	28	5	21	44	1.73
10405927--10405951	13	1.9	13	100	0	50	48	8	0	44	1.32
10407857--10408022	29	5.8	28	82	5	179	42	10	8	39	1.69
10407973--10408034	29	2.1	29	82	5	72	40	9	12	37	1.77
10412163--10412199	19	2.0	18	89	5	56	40	2	8	48	1.47
10415201--10415253	22	2.4	22	96	0	97	47	26	5	20	1.72
10420223--10420298	29	2.7	28	83	4	91	34	7	14	43	1.74
10420406--10420463	24	2.4	24	97	0	107	20	18	22	37	1.94
10420430--10420529	45	2.2	45	76	3	103	31	18	17	34	1.93
10423087--10423115	15	2.0	15	93	6	51	82	0	17	0	0.66
10423136--10423210	26	2.8	26	77	14	73	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10423147--10423267	16	7.4	16	71	18	79	46	0	1	51	1.16
10423279--10423334	23	2.5	23	80	8	71	64	0	0	35	0.94
10423574--10423625	27	1.9	27	92	7	88	28	11	3	55	1.53
10434619--10434683	28	2.3	28	81	2	67	44	20	6	29	1.75
10437782--10437863	44	1.9	41	82	7	101	54	0	17	28	1.42
10451133--10451173	21	1.9	22	90	5	66	17	24	7	51	1.70
10451222--10451265	20	2.1	22	87	8	65	0	25	9	65	1.21
10453007--10453074	34	2.0	34	91	0	109	44	10	22	23	1.83
10456404--10456786	50	7.7	50	84	1	462	26	8	18	45	1.78
10456340--10456761	100	4.3	100	82	3	475	26	8	18	46	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50