genome.fa.s8.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  28  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12398025--12398164	67	2.1	67	80	7	151	27	12	25	34	1.92
12400130--12400311	73	2.5	73	87	0	258	36	17	19	26	1.94
12401472--12401576	36	2.9	35	83	8	131	34	14	28	22	1.93
12424505--12424547	22	2.1	21	87	12	63	0	25	11	62	1.29
12425956--12426002	20	2.3	21	81	3	60	51	0	8	40	1.33
12430504--12431426	461	2.0	460	99	0	1837	36	17	11	34	1.86
12431444--12431506	30	2.2	28	88	5	90	47	7	14	30	1.72
12434869--12435031	70	2.3	70	82	2	220	31	19	22	26	1.98
12436686--12436729	21	2.1	21	82	0	52	31	2	27	38	1.69
12437080--12437113	2	17.0	2	100	0	68	50	0	0	50	1.00
12444498--12444560	33	1.9	33	83	6	83	39	4	15	39	1.69
12450251--12450387	43	3.2	43	82	2	150	25	32	14	27	1.95
12451530--12451678	60	2.4	61	83	9	180	2	30	7	59	1.39
12451652--12451689	20	2.0	20	89	5	60	0	23	0	76	0.79
12451653--12451690	15	2.5	15	87	8	51	0	23	0	76	0.79
12475004--12475046	20	2.1	21	86	4	61	39	4	20	34	1.74
12479053--12479319	68	3.9	68	79	1	239	37	9	19	34	1.84
12479664--12479723	20	3.0	21	78	11	63	35	11	16	36	1.85
12495300--12495337	20	1.9	20	100	0	76	52	0	0	47	1.00
12495352--12495401	22	2.3	21	86	3	73	74	0	8	18	1.06
12495388--12495417	15	2.0	15	93	0	51	63	0	20	16	1.31
12503834--12503878	24	1.9	23	86	4	63	35	4	37	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12513642--12513753	43	2.6	43	88	2	163	22	19	38	19	1.94
12527577--12527601	13	1.9	13	100	0	50	44	0	8	48	1.32
12532930--12532972	22	2.0	22	81	9	52	58	6	23	11	1.57
12546975--12547202	126	1.8	126	83	1	305	32	16	14	36	1.89
12549981--12550060	39	2.1	39	90	0	124	21	22	11	45	1.83
12554066--12554140	2	38.5	2	94	5	136	49	0	0	50	1.00
12555121--12555158	2	19.5	2	94	5	69	52	0	0	47	1.00
12558524--12558548	12	2.1	12	100	0	50	52	8	0	40	1.31
12559087--12559152	30	2.2	30	81	5	80	39	10	3	46	1.54
12560883--12560961	35	2.3	35	81	0	86	32	12	12	41	1.81
12561474--12561542	32	2.2	32	89	0	102	36	15	8	39	1.79
12561486--12561557	32	2.2	32	85	0	90	38	18	5	37	1.74
12561535--12561615	41	2.0	39	90	4	126	46	13	2	37	1.57
12561737--12561831	45	2.1	45	88	0	136	33	20	16	29	1.95
12561778--12562029	77	3.2	77	79	3	272	38	14	15	31	1.88
12561993--12562051	29	2.0	30	90	6	93	37	15	13	33	1.86
12562002--12562076	29	2.5	30	82	2	89	37	13	12	37	1.82
12563403--12563457	21	2.6	21	82	5	67	25	9	18	47	1.78
12563403--12563467	21	3.1	21	82	4	60	26	7	20	46	1.77
12563559--12563632	21	3.5	21	81	1	76	29	4	13	52	1.58
12563577--12563639	22	2.9	21	83	2	72	31	3	12	52	1.55
12563673--12563718	22	2.1	22	84	8	58	39	4	15	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12563517--12563757	119	2.0	118	81	5	281	31	6	16	45	1.73
12563717--12563759	21	2.0	21	86	8	61	32	6	11	48	1.66
12564253--12564375	32	3.7	32	77	10	113	28	12	25	34	1.92
12567410--12567534	63	2.0	62	96	3	225	44	13	12	28	1.81
12568093--12568138	2	23.5	2	86	4	67	0	43	0	56	0.99
12573720--12573782	34	1.9	32	84	12	83	55	0	0	44	0.99
12578124--12578149	11	2.4	11	100	0	52	38	0	0	61	0.96
12578102--12578143	16	2.5	17	84	11	59	26	0	0	73	0.83
12589613--12589656	2	22.0	2	100	0	88	50	0	0	50	1.00
12591827--12591967	73	1.9	73	97	0	264	27	19	17	35	1.94
12612595--12612619	2	12.5	2	100	0	50	52	0	0	48	1.00
12619320--12619374	24	2.3	24	100	0	110	23	25	20	30	1.98
12619774--12619816	22	2.0	21	82	13	52	34	6	20	37	1.80
12619810--12619847	15	2.5	15	91	0	58	28	2	15	52	1.56
12626087--12626113	13	2.1	13	100	0	54	44	0	7	48	1.31
12637265--12637323	26	2.3	26	79	5	66	1	28	3	66	1.18
12637544--12637606	29	2.1	30	82	2	74	44	19	7	28	1.78
12639289--12639398	18	5.6	20	69	21	72	45	5	5	43	1.50
12639561--12639601	20	2.0	20	95	0	73	51	7	0	41	1.30
12644012--12644050	12	2.9	15	78	21	50	41	7	2	48	1.45
12645165--12645261	45	2.1	46	86	5	135	19	34	18	27	1.95
12654303--12654361	26	2.3	26	79	5	66	1	28	3	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12654463--12654503	22	1.9	22	85	5	57	26	17	4	51	1.65
12658394--12658486	43	2.2	43	90	0	141	25	33	16	24	1.96
12659264--12659305	20	2.1	20	86	0	57	42	7	30	19	1.78
12679155--12679213	30	2.0	29	96	0	100	47	28	1	20	1.59
12679202--12679242	2	20.5	2	100	0	82	51	0	0	48	1.00
12681228--12681425	72	2.7	73	85	5	251	34	22	20	22	1.96
12687387--12687412	13	2.0	13	100	0	52	23	0	0	76	0.78
12687383--12687418	17	2.1	17	89	0	54	22	0	0	77	0.76
12687736--12687829	48	1.9	50	89	4	147	22	37	22	18	1.94
12693557--12693611	25	2.2	25	86	0	74	23	23	18	34	1.96
12696242--12696351	37	3.0	37	78	0	103	28	11	34	25	1.91
12703306--12703352	2	23.5	2	100	0	94	51	0	48	0	1.00
12713177--12713236	22	2.7	22	78	14	61	0	33	0	66	0.92
12713177--12713233	14	4.0	14	75	4	60	0	33	0	66	0.92
12714247--12714293	19	2.6	19	90	6	71	36	6	0	57	1.24
12718903--12718986	40	2.1	40	97	0	159	25	11	16	46	1.81
12727612--12727638	14	1.9	14	100	0	54	59	11	22	7	1.56
12728552--12728587	17	2.1	17	89	0	54	30	22	36	11	1.89
12734727--12734848	43	2.8	43	88	2	174	22	18	39	18	1.92
12734834--12734896	20	3.2	19	88	2	90	25	4	41	28	1.75
12737572--12737693	43	2.9	42	90	4	183	25	17	35	22	1.95
12737572--12737728	43	3.7	43	84	1	181	24	18	35	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12738048--12738151	43	2.4	42	87	9	140	27	16	35	20	1.94
12737287--12738200	459	2.0	458	96	0	1661	27	13	27	30	1.94
12738048--12738164	43	2.7	43	84	5	139	26	18	35	19	1.95
12738191--12738255	20	3.2	20	91	4	94	23	4	41	30	1.74
12743556--12743680	43	2.9	43	82	4	146	23	34	16	25	1.95
12749246--12749294	22	2.2	22	85	7	64	28	18	20	32	1.96
12758050--12758084	16	2.2	16	89	0	52	48	8	2	40	1.49
12778865--12779059	73	2.7	72	80	5	205	42	16	17	23	1.89
12819833--12819895	31	2.0	32	90	3	101	52	14	9	23	1.71
12820771--12820920	73	2.1	73	87	2	212	42	18	18	21	1.90
12820771--12820958	73	2.6	73	81	5	195	41	18	18	21	1.90
12826778--12826812	14	2.5	14	85	0	52	74	0	20	5	1.02
12826755--12826810	19	3.0	19	75	20	55	66	0	23	10	1.23
12827352--12827423	25	2.9	25	81	6	76	45	13	29	11	1.78
12832984--12833021	19	2.0	19	100	0	76	26	0	31	42	1.56
12844117--12844389	137	2.0	136	93	0	456	42	21	13	21	1.88
12844495--12844661	42	4.0	42	84	1	192	20	31	21	26	1.98
12844532--12844661	42	3.1	42	88	1	199	19	30	23	26	1.98
12853618--12853790	73	2.4	73	81	5	197	41	16	18	23	1.90
12854060--12854240	73	2.5	73	81	5	195	40	17	19	22	1.91
12876631--12876671	20	2.0	20	86	9	57	2	31	0	65	1.05
12877234--12877326	47	2.0	46	85	2	123	11	31	7	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12877405--12877443	21	1.9	19	90	10	60	28	0	0	71	0.86
12877804--12877851	19	2.6	19	83	3	62	39	4	0	56	1.19
12879406--12879450	20	2.2	21	88	11	67	53	6	24	15	1.66
12879405--12879451	21	2.2	22	82	17	64	55	6	23	14	1.63
12881799--12881824	5	5.2	5	100	0	52	38	0	19	42	1.51
12889131--12889171	21	1.9	21	85	5	55	48	9	24	17	1.76
12889129--12889177	21	2.3	21	75	3	53	57	8	20	14	1.63
12891796--12891833	19	2.0	19	94	0	67	28	0	28	42	1.56
12893543--12893600	30	1.9	30	89	0	89	34	10	17	37	1.84
12894508--12894556	22	2.2	22	100	0	98	22	18	10	48	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50