genome.fa.s5.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  21  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6954127--6954178	27	1.9	27	92	0	86	17	0	30	51	1.45
6954110--6954163	20	2.6	20	82	5	63	20	1	29	48	1.60
6954316--6954396	43	1.9	42	87	7	119	33	14	19	32	1.92
6954699--6954734	16	2.2	16	95	0	63	2	50	13	33	1.57
6955593--6955628	7	5.1	7	100	0	72	44	0	0	55	0.99
6955769--6956042	9	30.4	9	74	13	199	46	20	0	33	1.51
6955777--6955821	23	2.0	23	90	0	72	44	22	0	33	1.53
6955769--6955834	32	2.1	32	91	0	105	46	21	0	31	1.51
6955800--6956042	56	4.2	56	93	3	398	46	20	0	33	1.51
6961808--6961847	21	2.0	21	90	5	64	25	20	22	32	1.98
6963621--6963660	21	1.9	21	89	0	62	25	20	22	32	1.98
6963671--6963766	42	2.3	42	83	3	113	30	22	15	31	1.95
6964050--6964121	21	3.4	21	82	3	90	5	43	15	36	1.70
6965353--6965396	21	2.1	21	95	0	79	18	11	25	45	1.82
6967379--6967456	41	2.0	39	90	7	122	37	3	5	53	1.41
6967758--6967843	7	12.0	7	87	4	127	43	39	1	16	1.55
6968027--6968077	14	3.7	13	77	12	57	37	43	0	19	1.51
6968022--6968068	15	3.2	14	77	17	51	34	44	0	21	1.52
6968136--6968162	14	1.9	14	100	0	54	44	29	0	25	1.54
6968186--6968245	28	2.1	28	84	0	75	51	28	0	20	1.47
6968352--6968513	76	2.2	73	85	5	209	34	20	16	28	1.94
6968528--6968589	31	2.0	31	96	0	115	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6968724--6968776	24	2.2	24	83	12	65	43	11	15	30	1.81
6968772--6969101	115	2.9	113	85	4	430	26	22	19	31	1.98
6978237--6978298	31	2.0	31	100	0	124	25	32	9	32	1.88
6979712--6979738	7	3.9	7	100	0	54	40	0	0	59	0.98
7014950--7015114	12	13.0	12	72	15	91	26	14	9	49	1.74
7015031--7015097	23	2.8	25	74	21	70	23	13	10	52	1.71
7015044--7015091	23	2.1	23	88	11	73	22	14	10	52	1.72
7017619--7017650	11	2.6	13	90	9	50	43	12	6	37	1.68
7018378--7018496	33	3.4	33	71	20	114	21	18	27	31	1.97
7018244--7018473	102	2.3	103	85	3	315	20	18	28	32	1.97
7023224--7023370	33	4.4	33	69	23	108	18	19	29	33	1.95
7023192--7023381	102	1.9	102	92	0	317	19	20	28	31	1.97
7030120--7030368	50	4.8	50	82	4	282	20	29	23	25	1.99
7030119--7030368	100	2.4	104	85	5	328	21	29	23	25	1.99
7030706--7030763	30	1.9	30	86	6	82	29	24	6	39	1.81
7031360--7031396	18	2.1	18	94	0	65	24	27	18	29	1.98
7037722--7037960	50	4.6	51	84	4	268	20	31	24	24	1.98
7037721--7037962	100	2.3	105	85	6	316	20	30	24	24	1.98
7038295--7038352	30	1.9	30	89	0	89	32	24	5	37	1.77
7046707--7046870	12	13.0	12	74	13	107	26	15	9	48	1.76
7046800--7046845	23	2.0	22	88	12	67	21	15	10	52	1.73
7051145--7051239	40	2.4	40	83	0	118	31	23	22	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7051320--7051457	41	3.4	41	83	0	168	23	15	26	35	1.94
7051320--7051497	82	2.2	80	80	5	196	22	16	26	34	1.95
7055048--7055144	13	7.4	13	75	11	81	44	14	0	41	1.45
7055074--7055156	27	3.1	27	81	10	116	43	14	0	42	1.45
7055042--7055271	53	4.1	55	80	10	202	44	12	0	42	1.47
7055178--7055268	18	4.9	18	73	15	78	45	10	0	43	1.39
7055170--7055221	22	2.4	22	75	15	54	38	15	0	46	1.46
7055178--7055232	17	3.2	17	82	5	74	41	10	0	47	1.39
7055121--7055272	39	4.0	38	77	12	132	44	11	0	43	1.46
7057146--7057290	66	2.2	66	83	2	184	39	18	25	16	1.91
7057645--7058082	43	10.3	43	85	3	537	25	18	31	24	1.97
7057645--7058098	128	3.5	128	86	2	574	25	18	31	25	1.98
7057645--7058082	171	2.6	170	84	3	576	25	18	31	24	1.97
7059271--7059547	134	2.1	134	94	0	482	34	10	16	37	1.84
7059630--7059978	174	2.0	174	91	1	565	32	12	24	30	1.92
7061650--7061739	44	2.0	44	97	0	171	37	13	24	24	1.91
7062888--7062960	6	11.7	6	73	13	58	17	1	6	73	1.11
7062893--7062948	24	2.4	23	85	8	69	16	1	7	75	1.11
7064674--7064716	5	8.6	5	86	0	50	30	4	23	41	1.74
7067715--7067765	21	2.2	23	83	13	61	43	27	5	23	1.77
7070419--7070610	98	2.0	98	95	2	350	36	23	10	28	1.89
7084635--7084729	28	3.6	25	70	20	68	60	5	4	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7084635--7084686	26	2.0	27	88	3	79	61	3	1	32	1.25
7093959--7094006	21	2.3	21	85	0	60	29	20	31	18	1.97
7093975--7094017	21	2.0	21	90	0	68	25	20	34	18	1.96
7095556--7095602	17	2.7	18	77	9	53	27	31	21	19	1.97
7100469--7100679	108	1.9	108	88	2	316	31	18	20	29	1.96
7103647--7103685	19	2.0	20	95	5	71	53	5	25	15	1.62
7103804--7103831	13	2.2	13	100	0	56	39	0	14	46	1.44
7105014--7105064	23	2.2	23	92	0	84	41	21	9	27	1.84
7105440--7105468	2	14.5	2	100	0	58	51	0	48	0	1.00
7116512--7116614	54	1.9	54	88	4	154	37	19	21	21	1.94
7119546--7119605	5	12.0	5	96	0	111	38	0	1	60	1.07
7120660--7120744	21	4.0	21	84	4	100	18	22	23	35	1.96
7123349--7123396	15	3.2	15	84	0	60	56	0	8	35	1.30
7123349--7123396	3	16.0	3	86	0	51	56	0	8	35	1.30
7127548--7127584	15	2.4	15	95	4	65	27	24	5	43	1.76
7127871--7127925	27	2.0	27	85	0	74	18	27	16	38	1.92
7130214--7130271	18	3.2	18	90	4	82	68	6	12	12	1.37
7130228--7130260	9	3.7	9	84	15	50	72	6	12	9	1.26
7130390--7130433	18	2.4	18	92	3	70	68	4	15	11	1.36
7131666--7131701	18	2.0	18	100	0	72	16	22	22	38	1.93
7132517--7132569	27	2.0	27	88	0	79	41	0	24	33	1.55
7132568--7132596	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7140497--7140814	139	2.3	138	93	4	507	41	5	6	46	1.53
7140534--7140814	139	2.0	140	99	0	555	40	6	6	46	1.56
7151178--7151211	16	2.1	16	88	0	50	38	5	5	50	1.51
7151283--7151330	25	1.9	25	100	0	96	47	8	4	39	1.53
7151396--7151428	8	4.1	8	100	0	66	24	12	0	63	1.28
7153284--7153350	17	3.8	17	74	7	62	55	16	5	22	1.63
7153512--7153551	8	5.2	8	88	11	66	12	12	50	25	1.75
7153512--7153550	14	2.6	14	92	8	60	10	12	51	25	1.71
7153516--7153573	22	2.7	22	84	5	66	12	8	51	27	1.68
7154495--7154570	27	2.8	27	89	0	125	17	23	38	21	1.93
7154587--7154627	19	2.2	19	95	0	73	31	0	17	51	1.46
7158382--7158432	5	10.0	5	79	12	50	3	52	41	1	1.31
7158655--7158691	18	2.0	19	89	5	58	54	0	2	43	1.14
7163773--7163822	9	5.4	9	79	11	57	64	4	0	32	1.12
7170776--7170813	20	1.9	20	88	0	58	28	23	10	36	1.88
7171902--7171961	3	20.0	3	96	0	111	1	31	0	66	1.01
7172026--7172067	21	2.0	21	90	0	66	23	23	23	28	2.00
7172242--7172298	10	5.6	10	78	17	64	57	1	1	38	1.19
7172242--7172330	20	4.4	19	74	13	72	55	1	5	38	1.31
7172242--7172330	10	8.8	10	72	16	51	55	1	5	38	1.31
7177622--7177746	20	6.3	20	70	12	69	38	3	1	56	1.25
7177619--7177665	19	2.4	18	80	13	58	42	4	2	51	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7177656--7177708	21	2.6	20	79	5	61	33	1	1	62	1.17
7177687--7177741	28	2.0	28	82	10	69	40	1	0	58	1.09
7177654--7177746	40	2.3	40	78	8	102	36	2	1	60	1.16
7179571--7179608	18	2.1	18	85	14	51	42	0	0	57	0.98
7180085--7180143	22	2.8	22	75	14	70	49	0	0	50	1.00
7180108--7180165	25	2.3	26	82	8	66	48	1	3	46	1.29
7180960--7181006	23	2.0	23	87	0	67	14	4	6	74	1.17
7189758--7189843	26	3.3	25	88	6	118	39	10	15	34	1.81
7191392--7191440	25	1.9	26	87	4	73	38	8	6	46	1.58
7200396--7200436	20	1.9	22	85	14	59	56	2	0	41	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85