genome.fa.s5.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  40  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13471006--13471033	8	3.5	8	100	0	56	39	35	0	25	1.56
13472646--13472723	23	3.4	22	76	13	86	19	11	26	42	1.85
13472638--13472730	46	2.0	46	95	0	168	20	11	24	43	1.85
13480760--13480808	21	2.3	21	96	3	89	20	10	20	48	1.78
13480768--13480814	21	2.2	21	88	3	67	29	12	17	40	1.86
13483237--13483275	19	2.0	20	95	5	71	53	5	5	35	1.45
13485167--13485537	44	8.5	44	72	5	295	25	25	20	28	1.99
13485158--13485410	87	2.9	87	93	0	416	24	23	22	28	1.99
13485385--13485588	88	2.3	87	85	0	264	26	26	20	26	1.99
13485167--13485589	219	1.9	218	88	0	630	25	24	21	27	1.99
13485254--13485542	132	2.2	131	91	0	452	25	26	20	27	1.99
13485554--13485977	216	2.0	216	96	0	776	27	23	20	29	1.98
13495091--13495241	41	4.0	34	82	12	122	22	27	20	29	1.99
13495125--13495266	41	3.5	41	95	0	257	23	28	20	27	1.99
13496766--13497322	3	185.7	3	100	0	1114	33	0	0	66	0.92
13508388--13508426	19	2.0	20	95	5	71	53	5	5	35	1.45
13512503--13512606	46	2.3	46	89	0	163	39	14	14	31	1.86
13515238--13515267	16	1.9	15	93	6	51	30	10	13	46	1.75
13516583--13516657	28	2.7	28	81	8	91	29	20	24	26	1.99
13516546--13516665	56	2.2	56	78	4	136	32	20	20	25	1.97
13516770--13516824	26	2.1	26	100	0	110	34	21	21	21	1.97
13517029--13517418	27	14.4	27	82	2	424	20	16	20	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13520214--13520294	26	3.2	26	73	7	85	25	20	19	33	1.97
13520243--13520288	24	1.9	24	86	0	65	23	23	19	32	1.97
13530881--13530952	26	2.8	26	80	0	81	40	22	22	15	1.91
13531103--13531221	27	4.4	27	83	0	139	20	18	17	43	1.88
13531103--13531221	54	2.2	54	86	3	159	20	18	17	43	1.88
13548087--13548769	137	4.9	139	89	4	1060	45	5	7	42	1.53
13548087--13548769	276	2.5	276	97	0	1278	45	5	7	42	1.53
13550951--13551058	53	2.0	53	94	0	189	38	21	7	32	1.81
13551350--13551378	12	2.4	12	100	0	58	20	17	6	55	1.65
13555977--13556031	23	2.4	23	81	6	67	18	10	23	47	1.80
13557832--13557876	15	2.9	16	81	12	58	53	2	0	44	1.13
13558543--13558573	2	15.5	2	93	0	53	51	3	0	45	1.17
13565478--13565639	81	2.0	81	95	0	288	32	21	12	33	1.91
13576505--13576599	26	3.7	26	91	0	145	21	25	29	24	1.99
13586706--13586943	51	4.7	51	80	2	253	26	15	27	31	1.96
13586704--13586954	102	2.5	102	86	0	331	26	15	27	31	1.96
13595785--13595854	29	2.4	29	86	6	90	34	7	30	28	1.84
13598471--13598505	18	1.9	18	100	0	70	2	11	0	85	0.69
13598470--13598509	15	2.8	14	85	7	53	2	12	0	85	0.71
13606157--13606186	15	2.0	15	93	0	51	40	16	10	33	1.82
13615977--13616411	27	16.1	27	81	6	393	17	20	20	42	1.90
13634369--13634430	27	2.2	28	82	2	72	19	17	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13634380--13634754	27	14.0	27	79	5	312	16	18	22	42	1.88
13634410--13634726	80	3.9	79	75	11	252	17	17	22	43	1.88
13641642--13641706	20	3.2	20	64	12	51	16	38	13	30	1.88
13641627--13641781	41	3.8	40	86	1	193	20	30	14	34	1.92
13642608--13642637	12	2.5	12	94	0	51	23	40	30	6	1.80
13643757--13643876	25	4.8	25	86	2	170	32	24	15	28	1.95
13643752--13643894	75	1.9	75	84	2	189	36	22	13	27	1.92
13643757--13643900	50	2.9	50	84	3	146	34	22	13	28	1.93
13647820--13647861	20	2.1	20	90	0	66	14	28	16	40	1.88
13651952--13652003	20	2.5	20	93	3	86	50	19	9	21	1.76
13652970--13653019	20	2.5	20	86	0	64	42	24	26	8	1.82
13658764--13658833	26	2.7	27	91	4	108	31	14	25	28	1.95
13658761--13658847	26	3.3	26	85	0	102	27	19	26	26	1.99
13660874--13660904	15	2.1	15	93	0	53	64	6	0	29	1.18
13678196--13678514	159	2.0	159	100	0	638	27	13	21	37	1.91
13681899--13681958	22	2.7	22	92	0	93	30	21	16	31	1.96
13681898--13681969	22	3.3	22	86	3	83	31	23	15	29	1.95
13681950--13682018	29	2.4	29	76	11	70	31	18	17	31	1.94
13713232--13713371	27	4.6	34	80	19	168	33	28	22	15	1.94
13713126--13713311	102	1.8	102	89	0	291	30	29	22	17	1.97
13713232--13713371	60	2.3	60	100	0	280	33	28	22	15	1.94
13720887--13720928	22	2.0	22	85	4	59	30	7	19	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13725148--13725182	16	2.2	16	90	5	54	42	0	0	57	0.99
13725017--13726068	155	6.8	155	99	0	2068	47	4	3	44	1.40
13725303--13725337	16	2.2	16	90	5	54	42	0	0	57	0.99
13725458--13725492	16	2.2	16	90	5	54	42	0	0	57	0.99
13725613--13725647	16	2.2	16	90	5	54	42	0	0	57	0.99
13725768--13725802	16	2.2	16	90	5	54	42	0	0	57	0.99
13725923--13725957	16	2.2	16	90	5	54	42	0	0	57	0.99
13726101--13726210	45	2.6	44	81	11	133	31	28	5	34	1.80
13726191--13726240	16	3.1	16	94	0	82	34	36	0	30	1.58
13729187--13729216	15	1.9	16	93	6	53	56	0	0	43	0.99
13732464--13732668	102	2.0	103	99	0	403	32	7	6	52	1.57
13734974--13735015	17	2.5	17	85	11	59	76	0	4	19	0.96
13734976--13735015	18	2.3	17	86	4	53	77	0	5	17	0.94
13735114--13735164	18	2.8	17	82	11	57	37	0	3	58	1.16
13746710--13746767	30	1.9	30	86	6	82	50	13	6	29	1.68
13752989--13753043	22	2.5	22	94	2	94	34	20	3	41	1.69
13759695--13759887	48	4.0	48	81	5	228	25	21	29	23	1.99
13759701--13759878	96	1.9	96	86	0	257	24	20	30	24	1.99
13766228--13766289	29	2.1	31	82	11	76	43	8	19	29	1.79
13766485--13766630	48	3.0	48	84	9	156	26	21	28	23	1.99
13769607--13769653	25	1.9	24	83	12	60	10	29	2	57	1.44
13799336--13799433	42	2.3	41	82	6	124	25	34	19	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13799357--13799444	42	2.1	42	89	8	135	22	31	22	22	1.98
13799426--13799456	12	2.6	12	94	0	53	6	19	45	29	1.75
13802032--13802057	13	2.0	13	100	0	52	23	7	30	38	1.83
13805130--13805299	84	2.0	83	87	1	241	33	25	21	20	1.97
13811441--13811479	20	1.9	21	89	5	62	43	0	12	43	1.42
13823294--13823382	27	3.3	27	83	9	110	23	37	19	20	1.94
13823298--13823476	27	6.6	27	74	8	78	27	35	16	20	1.94
13826947--13827042	26	3.7	26	83	4	113	22	18	31	27	1.97
13827703--13827731	13	2.3	13	94	5	51	44	13	0	41	1.44
13836793--13836924	41	3.2	39	79	6	138	34	12	27	25	1.92
13839071--13839189	9	13.6	9	77	11	104	40	25	9	25	1.85
13839071--13839198	18	7.3	18	79	8	129	41	25	8	25	1.83
13839076--13839216	69	2.0	70	98	1	275	41	26	8	24	1.83
13839313--13839356	18	2.4	18	88	0	61	13	2	43	40	1.57
13845269--13845358	32	2.9	31	93	3	153	46	13	10	30	1.75
13845270--13845365	31	3.1	31	93	3	165	46	12	9	31	1.73
13851214--13851239	2	13.0	2	100	0	52	50	0	0	50	1.00
13851798--13851839	11	3.7	12	90	9	70	50	0	4	45	1.23
13852446--13852537	40	2.3	39	89	9	141	65	0	3	31	1.09
13853911--13853935	12	2.1	12	100	0	50	24	36	24	16	1.94
13854098--13854156	9	6.6	9	90	0	82	44	22	8	25	1.81
13858534--13858566	17	1.9	17	93	0	57	21	18	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13860573--13860603	15	2.1	15	100	0	62	32	6	0	61	1.21
13861728--13861814	29	3.1	29	66	12	81	40	27	14	17	1.89
13861712--13861832	56	2.2	56	89	0	188	38	27	14	19	1.90
13871250--13871281	16	2.0	16	93	0	55	25	15	0	59	1.36
13871426--13871619	51	3.8	52	80	6	227	30	27	17	24	1.97
13871429--13871620	101	1.9	102	84	3	253	31	26	17	25	1.97
13879567--13879689	50	2.4	50	86	2	174	34	14	13	37	1.86
13881861--13881900	18	2.2	18	86	8	55	70	0	17	12	1.18
13883897--13884019	50	2.4	50	86	2	174	32	15	13	38	1.87
13885719--13885785	25	2.6	25	81	9	73	31	22	22	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85