genome.fa.s5.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  48  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16092820--16092943	32	3.9	31	73	10	97	20	19	21	38	1.93
16092820--16092952	64	2.1	64	84	2	169	20	19	21	39	1.93
16092960--16093001	22	1.9	22	85	9	59	21	14	16	47	1.82
16108209--16108312	42	2.5	43	85	4	140	26	24	23	25	2.00
16108966--16109027	27	2.3	28	80	8	74	37	30	14	17	1.90
16110056--16110349	145	2.0	146	99	0	581	43	9	7	39	1.65
16110857--16110900	20	2.2	20	84	8	54	27	2	2	68	1.14
16110908--16110954	18	2.6	18	82	0	67	38	4	2	55	1.31
16111949--16112018	33	2.1	34	81	7	81	27	25	22	24	2.00
16112124--16112193	26	2.7	26	81	0	86	38	21	24	15	1.92
16112376--16112849	27	17.6	27	81	5	460	17	19	19	43	1.89
16112376--16112848	81	5.9	81	81	4	508	17	19	19	43	1.89
16117452--16117732	27	10.4	27	80	5	275	18	17	20	43	1.88
16117716--16117748	16	2.1	16	100	0	66	24	21	6	48	1.72
16121805--16121860	20	2.8	20	88	0	85	44	1	28	25	1.64
16123914--16124200	51	5.6	51	75	10	266	27	14	26	31	1.95
16123914--16124148	102	2.3	102	88	1	337	27	14	27	31	1.95
16148149--16148188	18	2.2	18	90	0	62	25	32	5	37	1.77
16148140--16148185	21	2.2	21	84	0	56	30	34	4	30	1.77
16159063--16159100	15	2.5	15	84	12	51	23	21	0	55	1.44
16161156--16161195	20	1.9	22	85	10	57	32	2	15	50	1.57
16171308--16171368	21	3.0	20	83	6	63	34	3	32	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16171328--16171363	18	2.0	18	88	0	54	33	5	36	25	1.79
16179209--16179234	8	3.2	8	100	0	52	38	0	0	61	0.96
16183221--16183278	25	2.3	25	96	0	107	27	20	25	25	1.99
16183221--16183289	25	2.8	25	90	0	93	30	18	24	26	1.98
16189526--16189560	13	2.7	13	90	0	52	34	14	14	37	1.86
16190830--16190916	27	3.2	26	76	14	70	21	21	17	39	1.93
16190850--16191073	27	8.3	27	83	4	109	22	16	18	42	1.89
16190882--16191073	81	2.4	79	80	3	197	22	15	18	43	1.87
16190899--16191047	54	2.8	54	85	2	201	22	15	18	43	1.87
16190894--16191065	54	3.2	54	82	1	193	23	13	19	43	1.86
16191265--16191299	17	2.0	18	88	5	54	17	42	25	14	1.86
16192571--16192624	25	2.2	25	89	0	81	16	46	12	24	1.82
16192575--16192630	25	2.4	22	75	16	58	16	46	12	25	1.81
16193120--16193168	18	2.6	19	78	18	57	22	2	2	73	1.04
16193119--16193168	22	2.3	22	83	10	66	22	2	2	74	1.03
16193945--16193977	14	2.3	15	89	5	50	27	27	21	24	1.99
16196768--16196834	20	3.3	20	67	10	55	13	35	19	31	1.90
16196752--16196937	40	4.6	40	88	0	273	18	31	18	32	1.95
16196789--16196934	20	7.3	20	64	3	60	17	32	18	30	1.94
16205361--16205412	22	2.4	22	96	0	95	30	15	21	32	1.94
16206083--16206124	21	2.0	21	90	0	66	33	14	2	50	1.56
16208713--16208954	50	4.9	50	79	3	238	28	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16241286--16241327	19	2.2	20	95	4	77	19	11	9	59	1.59
16245617--16245683	35	1.9	35	81	6	82	28	25	20	25	1.99
16248184--16248350	27	6.2	27	85	1	174	22	13	17	46	1.82
16248115--16248350	54	4.4	54	77	5	190	22	15	17	44	1.86
16253052--16253143	40	2.3	40	84	3	114	21	31	15	31	1.94
16263012--16263154	40	3.6	40	86	0	205	18	30	18	32	1.95
16276901--16277095	43	4.6	42	78	7	162	34	25	17	22	1.96
16277034--16277136	40	2.5	41	87	3	136	32	23	15	29	1.95
16278995--16279068	20	3.9	20	67	18	59	32	36	1	29	1.66
16279079--16279181	25	4.0	25	79	2	107	21	46	8	23	1.79
16279079--16279181	50	2.0	52	86	3	147	21	46	8	23	1.79
16279312--16279361	22	2.4	22	86	6	68	22	2	12	64	1.37
16281453--16281779	72	4.6	72	80	4	286	32	5	14	47	1.67
16282576--16282605	13	2.3	13	94	0	51	50	3	10	36	1.53
16287728--16287912	50	3.7	49	82	4	190	27	21	30	20	1.98
16287728--16287917	100	1.9	100	82	2	238	27	21	30	21	1.98
16287736--16287961	50	4.5	50	80	7	176	29	21	28	21	1.98
16301882--16301917	11	3.3	11	92	0	54	41	8	8	41	1.65
16303915--16303957	21	2.1	20	83	12	52	23	6	6	62	1.45
16321606--16321647	14	3.1	14	82	3	50	42	26	4	26	1.75
16321679--16322402	362	2.0	362	97	0	1376	34	22	9	33	1.86
16344874--16344928	26	2.1	27	89	3	85	50	0	12	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16350093--16350170	40	2.0	40	86	0	111	25	20	16	37	1.93
16355016--16355064	24	2.0	24	96	0	89	28	2	20	48	1.60
16357152--16357405	27	9.4	27	81	7	209	35	20	21	22	1.96
16357152--16357403	54	4.7	53	81	5	272	35	19	21	23	1.96
16357178--16357405	27	8.4	27	88	0	321	34	20	22	22	1.97
16357656--16357890	32	7.4	32	75	12	144	21	19	20	38	1.93
16357724--16357845	64	1.9	64	84	3	165	18	19	22	39	1.93
16357747--16357892	64	2.3	64	83	4	170	20	17	21	40	1.92
16372595--16372650	20	2.8	20	88	0	85	44	1	28	25	1.64
16373544--16373575	11	2.6	13	90	9	50	46	9	6	37	1.61
16374788--16375127	51	6.7	51	79	8	340	28	15	25	31	1.95
16374788--16375127	102	3.4	100	83	4	407	28	15	25	31	1.95
16375893--16375935	22	1.9	23	85	4	61	48	2	9	39	1.48
16376979--16377104	60	2.1	60	83	0	162	21	22	18	38	1.94
16377017--16377102	20	4.3	20	71	0	55	23	22	16	38	1.93
16380329--16380538	104	2.0	104	98	0	402	36	13	21	28	1.91
16386953--16387133	40	4.5	40	86	0	254	19	31	17	31	1.95
16386969--16387033	20	3.2	20	68	8	60	13	35	18	32	1.90
16388577--16388865	144	2.0	145	99	0	571	43	8	6	40	1.63
16395629--16395680	22	2.4	22	96	0	95	30	15	21	32	1.94
16396782--16396836	26	2.1	26	86	10	76	14	32	0	52	1.42
16406409--16406603	43	4.6	42	78	8	164	34	25	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16408323--16408417	40	2.3	40	83	1	118	46	16	22	14	1.84
16408569--16408667	25	3.9	25	80	4	92	20	45	11	23	1.82
16408801--16408850	22	2.4	22	86	6	68	22	2	12	64	1.37
16414585--16414705	50	2.4	50	82	5	145	28	21	27	22	1.99
16417312--16417349	20	1.9	20	100	0	76	18	10	36	34	1.85
16420414--16420752	50	6.8	50	80	5	355	27	21	28	22	1.99
16424226--16424356	43	3.0	43	86	2	165	21	18	27	32	1.96
16433444--16433470	14	1.9	14	100	0	54	33	14	14	37	1.88
16441175--16441233	30	2.0	30	83	6	75	45	1	22	30	1.62
16442631--16442657	7	3.9	7	100	0	54	25	29	14	29	1.95
16454464--16454640	50	3.4	50	80	7	185	23	27	21	27	1.99
16491887--16491934	17	2.7	18	78	9	55	47	16	0	35	1.47
16512199--16512500	27	11.2	27	80	2	302	19	16	21	42	1.89
16512199--16512492	81	3.6	80	81	2	338	19	16	22	42	1.89
16530961--16530988	6	4.7	6	100	0	56	85	0	0	14	0.59
16543727--16543765	20	2.0	20	89	0	60	53	2	25	17	1.56
16547667--16547701	13	2.7	13	90	0	52	45	0	11	42	1.40
16548816--16549214	199	2.0	199	97	0	744	20	21	20	37	1.94
16565374--16565447	23	3.2	23	86	0	112	32	5	28	33	1.80
16569569--16569628	15	4.1	14	78	10	59	6	21	1	70	1.20
16572099--16572172	23	3.2	23	88	0	121	31	5	29	33	1.80
16581150--16581313	81	2.0	81	93	0	283	30	23	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16586650--16587517	434	2.0	434	92	0	1461	19	25	19	35	1.95
16588808--16588857	25	2.0	25	96	0	91	40	2	24	34	1.66
16588802--16588856	25	2.2	25	90	0	83	45	1	23	29	1.63
16588934--16588967	10	3.1	11	87	12	52	17	11	2	67	1.34
16588935--16588970	12	3.2	12	88	11	58	22	8	5	63	1.43
16607835--16607878	12	3.5	13	87	6	65	77	4	4	13	1.08
16608887--16608918	15	2.1	16	94	5	57	71	0	21	6	1.07
16609410--16609443	16	2.0	18	88	11	54	14	5	35	44	1.70
16614386--16614441	30	1.9	28	82	13	69	60	10	14	14	1.58
16615683--16615741	23	2.5	23	78	8	66	25	5	33	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85