genome.fa.s5.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  69  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23938961--23939010	20	2.4	21	80	3	66	24	16	20	40	1.91
23940214--23940527	158	2.0	159	99	0	621	28	27	14	28	1.95
23946710--23946762	2	27.0	2	87	11	74	50	1	0	47	1.12
23948724--23948794	27	2.6	26	80	8	79	2	21	4	71	1.15
23952880--23952913	16	2.1	16	88	0	50	35	20	2	41	1.68
23953651--23953828	91	2.0	89	91	4	286	14	15	3	66	1.39
23960102--23960131	2	15.0	2	100	0	60	50	0	0	50	1.00
23966338--23966365	2	14.0	2	100	0	56	0	50	0	50	1.00
23970456--23970517	26	2.3	26	80	2	79	43	9	12	33	1.76
23973875--23973949	33	2.2	34	90	2	116	41	14	6	37	1.72
23975729--23975767	18	2.2	18	86	9	53	5	17	5	71	1.23
23977706--23977752	24	1.9	25	95	4	87	46	12	19	21	1.82
23980825--23980895	35	2.0	35	100	0	142	49	19	2	28	1.62
23985058--23985121	29	2.2	30	77	8	69	26	3	7	62	1.38
23995231--23995270	19	2.0	19	85	9	53	70	5	0	25	1.08
23999156--23999340	46	4.0	46	86	1	246	29	23	9	37	1.87
24000565--24000597	17	1.9	17	100	0	66	57	18	0	24	1.40
24001033--24001135	37	2.8	37	88	4	154	31	24	15	29	1.96
24001114--24001787	148	4.6	148	97	0	1235	31	27	12	29	1.92
24001898--24001938	19	2.1	20	86	4	57	31	9	2	56	1.45
24002348--24002377	14	2.1	14	93	0	51	0	16	0	83	0.65
24004627--24004675	22	2.2	23	85	3	64	32	28	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24010331--24010395	30	2.1	31	85	2	87	50	4	3	41	1.38
24013633--24013659	2	13.5	2	100	0	54	51	0	0	48	1.00
24017041--24017101	31	1.9	33	90	6	99	31	1	4	62	1.26
24017907--24017953	12	3.8	12	78	13	51	27	0	4	68	1.08
24019917--24020000	34	2.4	35	78	7	100	28	27	25	19	1.98
24020077--24020196	40	3.1	40	75	11	142	35	21	20	22	1.96
24020077--24020220	75	1.9	75	88	2	218	33	22	21	22	1.97
24020275--24020347	37	2.0	37	97	0	137	36	23	0	39	1.55
24020286--24020342	17	3.2	17	70	29	55	35	21	0	43	1.52
24026786--24027022	91	2.6	90	82	4	271	27	12	15	45	1.81
24027289--24027341	18	2.9	18	86	8	72	13	32	0	54	1.39
24027287--24027343	9	6.3	9	79	0	60	17	31	0	50	1.46
24029646--24029886	88	2.7	87	79	10	227	27	11	11	49	1.73
24029959--24029986	5	5.6	5	100	0	56	17	0	0	82	0.68
24029969--24030341	90	4.2	90	80	7	372	24	8	16	50	1.73
24029412--24030341	177	5.2	178	71	13	455	26	10	14	48	1.76
24041910--24041934	2	12.5	2	100	0	50	48	0	0	52	1.00
24044251--24044426	44	4.0	44	100	0	352	38	6	15	38	1.75
24044632--24044682	10	5.0	10	78	2	57	11	23	0	64	1.26
24045364--24045388	7	3.6	7	100	0	50	76	0	12	12	1.04
24051933--24051982	22	2.3	22	86	6	66	20	12	10	58	1.62
24055258--24055315	31	1.9	30	82	10	73	60	0	1	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24057077--24057129	15	3.4	15	79	12	54	67	0	1	30	1.01
24057091--24057127	17	2.2	17	95	0	65	70	0	2	27	1.01
24059507--24059607	31	3.4	31	68	13	102	21	19	14	43	1.87
24060008--24060171	60	2.7	60	78	6	170	51	12	14	22	1.75
24069421--24069747	164	2.0	164	88	3	489	32	12	19	35	1.90
24069814--24070116	164	1.8	164	90	2	484	31	12	19	36	1.89
24069429--24070168	369	2.0	369	100	0	1480	32	13	18	35	1.90
24075999--24076031	14	2.4	14	90	5	50	57	0	3	39	1.14
24076838--24076879	20	2.2	20	91	4	68	14	4	2	78	1.01
24079309--24079334	13	2.0	13	100	0	52	30	7	15	46	1.74
24079368--24079407	19	2.0	20	85	4	55	25	20	7	47	1.75
24081270--24081309	19	2.1	19	90	0	62	12	12	7	67	1.41
24082096--24082137	7	6.0	7	81	18	52	69	0	16	14	1.20
24082096--24082137	21	2.0	21	86	9	59	69	0	16	14	1.20
24083581--24084042	44	10.5	43	69	17	227	29	19	23	27	1.98
24083399--24084142	132	5.6	132	88	2	1084	29	18	23	27	1.98
24083400--24084142	264	2.8	264	92	0	1227	29	18	23	27	1.98
24085265--24085294	12	2.4	12	94	5	51	86	13	0	0	0.57
24090470--24090631	42	3.9	41	79	6	164	32	26	17	23	1.97
24103159--24103313	74	2.1	74	97	2	294	29	11	11	47	1.75
24114632--24114664	15	2.1	17	88	11	52	75	15	6	3	1.11
24114780--24114814	17	2.1	17	88	0	52	45	0	8	45	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24114784--24114826	17	2.5	16	82	14	50	44	2	9	44	1.49
24120608--24120732	55	2.3	55	87	0	178	49	17	8	24	1.73
24120964--24121033	35	2.0	35	94	0	122	12	38	7	41	1.71
24124150--24124251	41	2.5	41	87	6	136	27	23	20	28	1.99
24127298--24127323	13	2.0	13	100	0	52	61	23	0	15	1.33
24129864--24129940	26	3.1	25	90	7	97	45	22	7	24	1.78
24134548--24134609	29	2.1	29	100	0	124	35	19	19	25	1.95
24135037--24135080	12	3.4	12	79	14	52	68	2	9	20	1.28
24135104--24135143	3	13.3	3	100	0	80	67	0	0	32	0.91
24135854--24135896	21	2.0	21	86	8	61	74	0	11	13	1.07
24136542--24137165	143	4.4	143	87	0	872	26	20	20	31	1.98
24136794--24137153	44	7.7	44	66	15	139	25	21	22	30	1.99
24142611--24142655	9	5.4	9	77	20	53	77	0	0	22	0.76
24144691--24145599	469	1.9	467	87	2	1333	32	26	11	30	1.91
24152409--24152446	17	2.2	17	95	0	67	39	7	7	44	1.63
24153545--24153574	15	2.0	15	93	0	51	36	6	6	50	1.55
24154096--24154150	21	2.7	21	75	13	60	29	1	3	65	1.20
24154103--24154149	11	4.3	11	81	10	51	23	2	4	70	1.16
24171298--24171342	19	2.3	21	77	14	51	48	2	13	35	1.54
24174892--24174930	19	2.0	19	85	5	51	41	10	10	38	1.73
24179212--24179252	16	2.6	16	80	0	55	60	0	2	36	1.10
24183355--24183379	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24187355--24187381	6	4.5	6	100	0	54	29	0	0	70	0.88
24191771--24192064	147	2.0	147	98	1	572	31	7	17	42	1.78
24193671--24194017	41	8.5	41	89	0	523	28	19	28	23	1.98
24199477--24199695	114	1.9	114	98	0	420	35	17	14	32	1.91
24202195--24202251	10	5.7	10	74	15	55	29	5	3	61	1.35
24202197--24202237	19	2.2	18	91	4	64	34	4	0	60	1.18
24202195--24202252	21	2.9	21	80	12	68	29	5	3	62	1.33
24202197--24202252	20	2.8	20	86	5	69	30	5	3	60	1.36
24202247--24202285	17	2.4	16	87	8	53	30	2	0	66	1.05
24203465--24203880	206	2.0	207	99	0	816	41	6	14	37	1.72
24211665--24211856	44	4.3	44	98	0	366	31	4	25	39	1.75
24227406--24227439	15	2.1	17	89	10	54	44	2	0	52	1.16
24230690--24230754	30	2.2	30	88	0	94	24	29	4	41	1.75
24232513--24232549	18	2.1	18	94	0	65	24	27	8	40	1.83
24234244--24234513	127	2.1	127	86	2	382	29	15	17	38	1.90
24234572--24234638	33	2.1	31	91	5	107	37	16	1	44	1.57
24238654--24238729	31	2.5	30	77	14	82	53	3	13	28	1.57
24239183--24239419	118	2.0	119	99	0	467	32	6	5	55	1.48
24241261--24241327	25	2.7	25	85	0	89	32	16	25	25	1.96
24241316--24241481	73	2.3	72	77	13	178	37	21	22	19	1.94
24241392--24241498	25	4.3	25	73	10	69	36	20	22	20	1.95
24241439--24241498	26	2.3	26	85	2	77	38	20	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24241450--24241504	26	2.1	26	82	0	65	40	20	21	18	1.92
24256397--24256438	19	2.2	19	83	8	50	42	2	2	52	1.27
24264678--24264764	44	2.0	42	93	4	147	16	17	11	55	1.69
24265945--24265984	20	2.1	19	85	4	53	55	7	2	35	1.42
24269986--24270047	28	2.2	28	85	2	88	62	6	0	30	1.20
24270007--24270053	18	2.6	18	84	15	62	57	4	0	38	1.18
24270001--24270048	18	2.5	19	86	6	62	60	4	0	35	1.16
24270450--24270487	15	2.5	15	86	0	58	60	5	2	31	1.33
24270647--24270701	24	2.2	23	78	15	56	41	1	1	54	1.21
24270654--24270711	25	2.3	25	76	5	64	50	3	0	46	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85