genome.fa.s5.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  51  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17610504--17610544	21	1.9	22	90	5	66	34	21	7	36	1.82
17611176--17611292	25	4.7	23	83	10	99	23	20	23	31	1.98
17611176--17611295	50	2.4	50	84	5	145	25	20	23	31	1.98
17611226--17611295	25	2.8	25	93	0	122	28	20	18	32	1.96
17624913--17625091	50	3.5	50	82	4	187	24	22	30	22	1.99
17624968--17625112	50	2.9	50	83	0	137	24	24	32	19	1.97
17625167--17625224	28	2.1	28	93	0	98	32	20	22	24	1.98
17631498--17631600	51	2.0	51	92	0	170	39	21	4	33	1.75
17647256--17647290	13	2.6	14	86	9	54	62	2	34	0	1.10
17647998--17648023	13	2.0	13	100	0	52	30	7	7	53	1.57
17652746--17653037	50	5.7	50	78	4	230	27	20	28	23	1.99
17652746--17652988	100	2.4	100	80	4	261	27	20	28	23	1.99
17657688--17657717	11	2.7	11	100	0	60	40	0	0	60	0.97
17657729--17657758	15	1.9	16	93	6	53	36	13	0	50	1.42
17666411--17666468	30	1.9	30	82	6	73	48	12	6	32	1.67
17676386--17676457	25	2.9	25	85	4	101	26	16	26	30	1.97
17687507--17687736	40	5.7	41	78	1	214	36	15	28	20	1.93
17687519--17687656	21	6.8	21	68	15	85	34	16	29	18	1.93
17690497--17690540	18	2.3	18	88	7	61	52	13	6	27	1.66
17690507--17690544	18	2.1	18	100	0	76	50	10	7	31	1.66
17691118--17691150	18	1.9	17	88	11	50	54	0	0	45	0.99
17691168--17691217	16	3.0	16	79	5	55	64	4	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17694167--17694392	112	2.0	111	96	0	416	42	5	18	33	1.72
17701882--17702024	49	2.9	50	79	5	146	23	30	19	27	1.98
17703340--17703689	30	11.8	30	73	10	184	22	26	12	38	1.90
17703582--17703679	29	3.3	29	90	4	144	17	28	11	42	1.83
17703670--17703740	30	2.4	30	81	6	83	29	25	7	38	1.82
17707283--17707484	29	6.9	29	83	6	205	22	26	14	36	1.93
17707283--17707484	86	2.3	87	83	5	257	22	26	14	36	1.93
17717306--17717374	34	2.0	34	100	0	138	31	17	5	44	1.72
17722125--17722154	11	2.7	11	94	0	51	43	6	20	30	1.77
17728996--17729033	2	19.5	2	94	5	69	52	0	47	0	1.00
17751062--17751126	32	2.1	32	97	2	123	30	9	12	47	1.72
17755778--17755823	22	2.1	22	95	0	83	34	21	6	36	1.80
17758209--17758243	17	2.1	17	94	0	61	42	28	2	25	1.69
17761169--17761198	15	1.9	16	93	6	53	56	0	3	40	1.16
17766091--17766155	25	2.7	24	73	4	67	23	30	13	32	1.93
17766222--17766297	25	3.1	25	75	19	70	17	25	22	35	1.95
17767330--17767597	123	2.2	123	85	6	373	26	24	22	26	2.00
17779519--17779557	21	1.9	20	89	5	60	35	0	0	64	0.94
17781247--17781273	11	2.5	11	100	0	54	22	7	18	51	1.70
17783251--17783285	18	2.0	17	88	5	52	45	0	0	54	0.99
17783519--17783556	16	2.4	16	86	0	58	28	34	2	34	1.71
17784645--17784816	28	6.1	27	73	11	114	25	16	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17784649--17784747	29	3.5	28	73	14	85	25	16	19	39	1.91
17784731--17784794	27	2.3	27	86	2	92	26	14	28	31	1.95
17787742--17787838	48	2.0	48	82	4	115	18	13	25	42	1.87
17802772--17802858	25	3.5	24	78	6	93	22	26	20	29	1.99
17802838--17802903	24	2.7	24	83	2	87	30	21	24	24	1.99
17803451--17803493	20	2.2	19	83	4	50	23	6	23	46	1.76
17815228--17815261	13	2.6	13	95	0	59	14	11	2	70	1.27
17815302--17815352	13	3.9	12	85	14	66	17	1	9	70	1.24
17815304--17815364	14	4.5	13	78	13	70	13	1	9	75	1.12
17825485--17825567	42	2.0	42	82	0	103	27	19	26	26	1.99
17825826--17825870	21	2.0	23	83	8	58	40	4	11	44	1.60
17830794--17830829	18	2.0	18	100	0	72	27	11	27	33	1.91
17836689--17836776	44	2.0	44	93	0	149	27	21	13	37	1.91
17839009--17839233	27	8.4	27	88	1	274	35	21	20	22	1.96
17839027--17839233	80	2.6	80	88	3	274	34	21	20	22	1.97
17855883--17855922	21	1.9	21	84	0	53	2	35	0	62	1.09
17859801--17859839	20	2.0	20	84	0	51	23	0	28	48	1.51
17862648--17862739	27	3.4	27	83	7	107	28	25	26	20	1.99
17865638--17865667	15	2.0	15	93	0	51	76	0	3	20	0.92
17870694--17870830	56	2.6	53	83	11	156	22	27	22	27	1.99
17871955--17871979	3	8.3	3	100	0	50	64	0	0	36	0.94
17883534--17883571	18	2.1	18	85	9	51	7	18	0	73	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17892033--17892156	53	2.4	52	79	15	150	45	6	20	27	1.75
17892136--17892176	18	2.2	19	91	4	66	60	0	21	17	1.35
17900846--17900871	12	2.2	12	100	0	52	50	7	19	23	1.73
17911074--17911120	20	2.3	20	85	0	67	31	0	25	42	1.55
17919847--17919885	18	2.2	18	95	0	69	48	15	10	25	1.76
17927903--17927956	25	2.1	26	83	10	67	61	1	5	31	1.30
17940126--17940208	42	2.0	42	87	0	121	30	22	2	44	1.66
17959463--17959497	17	2.1	17	100	0	70	25	5	40	28	1.78
17961691--17961735	17	2.6	18	82	7	56	51	28	0	20	1.48
17963766--17963911	69	2.1	67	86	5	195	25	22	29	22	1.99
17966029--17966084	28	2.0	28	100	0	112	32	3	25	39	1.73
17974050--17974089	13	3.1	13	92	0	62	50	5	10	35	1.58
17987490--17987652	28	5.8	28	87	7	233	26	25	24	23	2.00
17987449--17987652	56	3.6	56	84	8	202	26	25	24	23	2.00
17987704--17987758	26	2.1	26	89	0	83	34	21	20	23	1.97
17988965--17989300	51	6.7	51	73	8	244	25	19	26	29	1.98
17988948--17989148	48	4.1	48	70	15	167	23	19	27	29	1.98
17988948--17989249	149	2.0	149	93	0	514	24	19	26	29	1.99
17989116--17989300	101	1.8	101	85	8	259	25	17	25	30	1.98
17990968--17991110	27	5.3	27	84	5	189	20	18	18	41	1.90
17990941--17991110	54	3.1	53	83	9	202	22	18	18	41	1.91
17990971--17991110	55	2.6	54	88	5	203	20	17	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18007316--18007376	30	2.0	30	96	0	113	29	14	22	32	1.94
18007682--18007720	18	2.2	18	95	4	71	61	5	2	30	1.31
18031897--18032013	41	2.9	41	75	2	119	35	25	20	18	1.96
18032931--18032984	18	3.0	18	78	5	56	55	1	0	42	1.10
18034454--18034483	14	2.1	14	93	0	51	40	0	43	16	1.48
18035073--18035140	26	2.6	26	77	9	68	45	2	1	50	1.26
18037919--18037966	22	2.3	22	85	7	64	60	8	4	27	1.44
18037980--18038022	18	2.3	19	84	8	61	44	2	0	53	1.13
18043263--18043309	8	5.8	8	87	12	69	51	10	2	36	1.49
18044239--18044321	36	2.3	36	91	0	130	45	30	9	14	1.77
18044229--18044357	36	3.6	35	83	6	127	44	31	10	14	1.79
18048740--18048805	25	2.6	25	80	4	69	21	24	25	28	1.99
18050377--18050450	25	3.0	25	73	15	71	31	20	20	28	1.97
18050723--18050749	2	13.5	2	100	0	54	48	0	0	51	1.00
18062292--18062342	24	2.1	25	85	3	68	54	7	1	35	1.40
18068000--18068123	43	2.9	43	77	11	137	21	20	27	30	1.98
18074819--18074856	16	2.4	16	86	4	51	36	0	15	47	1.46
18087330--18087355	5	5.2	5	100	0	52	61	0	0	38	0.96
18089502--18089555	25	2.2	25	86	0	72	29	24	11	35	1.90
18089566--18089629	24	2.6	25	87	2	94	28	25	21	25	1.99
18094902--18094937	17	2.1	17	100	0	72	11	11	0	77	0.99
18109872--18110049	59	3.1	59	94	4	326	37	7	19	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18110043--18110252	96	2.2	95	80	7	241	35	7	19	37	1.80
18110255--18110426	69	2.5	69	83	6	199	41	4	17	37	1.69
18112773--18112948	41	4.3	41	81	5	196	32	13	29	24	1.93
18114112--18114169	21	2.7	21	89	2	89	46	3	6	43	1.47
18114149--18114325	69	2.6	69	86	2	250	42	3	18	35	1.68
18114497--18114670	69	2.5	69	87	5	237	41	5	19	33	1.74
18114150--18114928	347	2.3	340	91	3	1274	39	6	19	35	1.76
18114815--18114846	16	1.9	17	93	6	57	50	3	15	31	1.60
18115844--18115904	20	2.9	21	87	7	97	45	3	8	42	1.50
18115884--18116061	70	2.6	69	85	4	252	42	3	18	35	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85