genome.fa.s5.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  22  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7200439--7200468	11	2.6	11	94	5	51	60	0	3	36	1.14
7204048--7204075	8	3.5	8	100	0	56	57	0	0	42	0.99
7204082--7204150	31	2.2	31	84	5	84	27	27	10	34	1.89
7220452--7220485	16	2.1	16	88	0	50	17	5	5	70	1.28
7225090--7225123	17	1.9	18	88	5	52	61	5	0	32	1.20
7230671--7230901	41	5.6	41	80	4	286	24	26	18	30	1.98
7230674--7230901	82	2.8	84	88	6	315	24	26	18	30	1.98
7235253--7235342	25	3.6	25	93	0	144	33	22	26	17	1.96
7235231--7235343	25	4.6	25	87	1	138	32	22	26	18	1.97
7235651--7235680	15	1.9	16	93	6	53	43	13	6	36	1.70
7240678--7240751	37	2.0	37	100	0	148	40	16	5	37	1.71
7244110--7244302	25	7.7	25	70	13	78	22	26	18	32	1.97
7251589--7251634	24	1.9	24	86	0	65	17	26	21	34	1.95
7251626--7251693	25	2.7	26	80	8	70	17	23	20	38	1.93
7251756--7251807	25	2.1	25	85	7	70	25	25	17	32	1.97
7253430--7253515	14	6.4	13	73	11	50	75	6	4	12	1.16
7258757--7258783	14	1.9	14	100	0	54	25	0	0	74	0.83
7264755--7264820	31	2.1	31	81	10	73	28	4	1	65	1.21
7266565--7266591	14	1.9	14	100	0	54	44	18	7	29	1.77
7270336--7270376	20	2.0	20	86	9	57	46	0	2	51	1.14
7272008--7272178	72	2.4	72	84	4	231	54	13	5	26	1.59
7272602--7272649	18	2.7	18	96	0	87	35	12	16	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7275278--7275351	25	3.0	25	89	0	103	47	25	24	2	1.65
7278927--7279067	40	3.6	40	74	6	126	26	17	25	29	1.98
7279503--7279540	19	2.0	19	100	0	76	21	10	26	42	1.85
7285567--7285602	18	2.0	18	88	0	54	25	2	13	58	1.49
7287429--7287497	35	2.0	35	94	0	120	27	21	23	27	1.99
7287625--7287709	32	2.8	30	81	10	91	28	14	27	30	1.95
7289415--7290243	414	2.0	414	100	0	1658	43	8	14	33	1.75
7290399--7290433	16	2.2	16	95	5	63	40	5	20	34	1.76
7291933--7291994	26	2.3	27	83	8	83	30	14	33	20	1.93
7295711--7295900	54	3.5	54	97	0	344	24	17	24	32	1.97
7300871--7300939	36	1.9	36	82	8	88	24	14	15	44	1.84
7302060--7302140	27	3.0	26	78	12	92	30	16	30	22	1.95
7305554--7305620	30	2.3	30	82	7	75	38	22	2	35	1.70
7309644--7309669	13	2.0	13	100	0	52	30	7	23	38	1.83
7310600--7310661	25	2.5	25	86	2	90	24	24	6	45	1.76
7317610--7317652	21	2.0	21	86	0	59	53	16	11	18	1.72
7317811--7317846	18	2.0	18	94	0	63	38	13	0	47	1.44
7321834--7321882	23	2.1	23	96	0	89	22	20	28	28	1.98
7323775--7323837	28	2.2	28	84	15	78	38	4	15	41	1.69
7324332--7325061	363	2.0	363	95	0	1307	29	20	15	35	1.93
7335776--7335808	14	2.2	15	89	10	50	39	18	6	36	1.75
7340498--7340547	23	2.2	23	100	0	100	26	8	18	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7343725--7343774	19	2.6	19	93	0	82	24	30	32	14	1.94
7348475--7348642	84	2.0	84	90	0	264	22	34	4	38	1.75
7348864--7349298	228	1.9	219	90	5	683	21	37	13	27	1.91
7357483--7357529	19	2.5	19	89	3	69	53	21	8	17	1.70
7359691--7359736	13	3.5	13	81	0	56	39	15	15	30	1.88
7362616--7362713	34	2.6	40	79	18	145	54	9	8	28	1.61
7366595--7366650	20	3.0	18	80	12	51	73	3	0	23	0.99
7366733--7366797	30	2.1	31	85	2	87	56	1	9	32	1.40
7370197--7370386	50	3.8	50	89	0	272	21	31	22	25	1.98
7372604--7372710	21	5.4	20	71	16	80	21	15	6	56	1.62
7372649--7372721	36	2.0	37	86	2	103	21	17	8	52	1.71
7379787--7379838	24	2.2	24	92	0	86	23	30	1	44	1.64
7380780--7380807	14	2.0	14	100	0	56	28	7	14	50	1.69
7381805--7381838	17	2.0	17	100	0	68	41	11	11	35	1.78
7383825--7383872	21	2.3	21	85	0	60	37	14	43	4	1.65
7384441--7384605	30	5.2	35	61	21	110	36	1	6	54	1.37
7384370--7384639	62	4.4	62	97	0	497	39	2	5	52	1.37
7387329--7387377	25	2.0	25	83	0	62	30	14	28	26	1.95
7387791--7387835	21	2.0	22	83	8	56	40	20	0	40	1.52
7405876--7405913	18	2.1	18	95	0	67	50	21	13	15	1.78
7408205--7408350	75	2.0	72	89	4	220	24	23	20	31	1.98
7421708--7421761	6	9.0	6	100	0	108	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7427313--7427371	22	2.7	23	79	10	61	47	0	1	50	1.11
7427385--7427418	18	2.0	18	88	11	54	29	2	2	64	1.22
7434532--7434589	29	2.0	29	96	0	107	31	43	6	18	1.77
7436807--7436884	38	2.1	38	100	0	156	39	20	15	24	1.91
7444766--7444805	21	1.9	21	89	0	62	20	12	15	52	1.74
7447836--7447860	13	1.9	13	100	0	50	40	8	8	44	1.63
7450593--7450628	14	2.6	14	95	0	63	41	0	2	55	1.14
7450588--7450639	11	4.4	12	75	20	56	46	0	1	51	1.12
7451670--7451757	23	4.0	22	85	5	117	17	21	23	37	1.94
7456095--7456354	129	2.0	130	99	0	513	40	11	18	30	1.86
7459824--7459901	24	3.2	23	77	16	68	15	24	20	39	1.91
7463470--7463805	131	2.6	131	87	1	496	23	23	22	30	1.99
7463766--7464018	43	5.9	43	88	0	364	23	22	20	33	1.97
7485299--7485335	17	2.2	17	95	0	65	51	5	13	29	1.63
7492401--7492451	27	1.9	27	88	11	79	27	3	15	52	1.60
7495551--7495599	2	24.5	2	100	0	98	48	0	51	0	1.00
7500962--7500998	9	4.1	9	89	0	56	29	8	13	48	1.71
7501025--7501077	27	2.0	26	92	3	88	52	5	15	26	1.64
7501932--7501970	16	2.5	16	83	4	53	33	7	12	46	1.71
7502655--7502703	23	2.1	23	84	0	62	28	18	24	28	1.98
7504854--7504901	20	2.4	20	89	6	71	27	14	16	41	1.87
7504854--7504907	20	2.8	18	84	13	56	24	16	14	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7516442--7516481	18	2.2	18	86	0	53	10	17	10	62	1.53
7517360--7517914	274	2.0	275	99	0	1094	44	14	13	27	1.82
7523953--7524019	24	2.7	24	81	11	64	62	0	2	34	1.10
7524023--7524055	16	2.0	17	88	5	50	63	0	0	36	0.95
7523979--7524053	17	4.2	19	74	15	56	64	0	2	33	1.08
7523927--7524061	19	7.3	20	68	22	66	60	0	2	36	1.12
7524067--7524114	20	2.3	21	79	13	64	72	2	2	22	1.05
7525581--7525628	25	1.9	25	82	0	60	54	6	0	39	1.26
7529711--7529788	41	1.9	41	89	0	120	17	28	17	35	1.94
7529710--7529808	41	2.4	41	82	0	117	23	27	16	33	1.95
7529710--7529820	41	2.7	39	77	9	114	20	27	16	35	1.94
7531045--7531087	10	4.2	10	82	11	52	30	2	2	65	1.18
7531369--7531399	12	2.6	12	94	0	53	32	9	0	58	1.31
7549394--7549437	18	2.4	18	82	17	56	36	2	2	59	1.23
7553705--7553882	90	2.0	91	83	7	229	42	12	11	32	1.80
7558113--7558139	2	13.5	2	100	0	54	48	0	0	51	1.00
7558953--7559050	43	2.3	41	82	3	115	36	5	5	53	1.45
7560615--7560650	18	2.0	18	88	0	54	25	16	5	52	1.65
7567639--7567681	6	7.2	6	100	0	86	34	48	0	16	1.46
7568138--7568193	24	2.5	22	82	11	60	64	0	5	30	1.16
7575098--7575153	22	2.7	20	81	15	60	69	8	19	1	1.24
7578565--7578619	28	2.0	26	86	6	74	61	9	10	18	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7579434--7579488	26	2.1	27	83	10	69	65	1	5	27	1.25
7579524--7579554	14	2.3	14	94	5	55	77	0	22	0	0.77
7579854--7579884	14	2.3	14	94	5	55	77	0	22	0	0.77
7579489--7580153	330	2.0	330	100	0	1330	41	7	17	33	1.78
7587760--7587793	18	1.9	17	88	5	50	76	0	23	0	0.79
7592659--7592860	100	2.0	101	99	0	397	27	36	12	23	1.91
7596932--7596978	23	2.0	23	84	8	60	38	8	0	53	1.32
7605858--7605911	20	2.6	21	82	5	65	25	5	33	35	1.80
7608152--7608201	20	2.5	20	83	6	66	50	16	6	28	1.68
7609750--7609793	23	1.9	23	90	0	70	31	4	4	59	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85