genome.fa.s5.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  60  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20979975--20980116	14	10.0	14	73	8	81	19	0	36	43	1.51
20982399--20982497	49	2.0	48	98	1	189	35	14	21	29	1.92
20984704--20985052	43	8.1	43	84	4	368	25	18	29	25	1.98
20984739--20985052	129	2.4	129	87	3	427	26	19	29	24	1.98
20985305--20985364	30	2.1	29	81	12	70	33	0	8	58	1.28
20985891--20985936	22	2.1	22	84	15	60	45	0	4	50	1.21
20985988--20986018	4	8.0	4	92	7	55	51	0	0	48	1.00
20986190--20986219	15	2.0	15	93	0	51	26	6	16	50	1.70
20987140--20987185	22	2.1	22	84	15	60	45	0	4	50	1.21
20987237--20987267	4	8.0	4	92	7	55	51	0	0	48	1.00
20987439--20987468	15	2.0	15	93	0	51	26	6	16	50	1.70
20990286--20990329	22	2.0	22	86	4	63	43	2	0	54	1.12
20991353--20991450	37	2.6	38	88	4	144	57	8	12	22	1.61
20991382--20991453	21	3.7	21	73	21	75	59	5	13	20	1.54
20992180--20992226	23	2.0	23	95	0	85	48	6	4	40	1.48
20993207--20993255	23	2.2	23	85	10	66	59	0	2	38	1.09
20993207--20993255	22	2.2	22	85	10	64	59	0	2	38	1.09
20993680--20993728	20	2.5	20	86	0	62	53	8	6	32	1.55
20999982--21000023	20	2.1	20	86	0	57	73	2	23	0	0.94
21005454--21005495	19	2.2	19	83	8	50	28	2	7	61	1.35
21005460--21005502	19	2.3	18	88	4	59	32	2	2	62	1.20
21014402--21014443	15	2.8	15	82	17	52	38	2	0	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21014381--21014433	18	2.9	18	72	13	54	37	3	0	58	1.16
21017825--21017854	8	3.8	8	90	0	51	83	0	0	16	0.65
21018071--21018098	7	4.0	7	100	0	56	85	0	0	14	0.59
21021065--21021119	28	2.0	28	100	0	110	36	5	18	40	1.74
21023898--21023988	3	30.3	3	100	0	182	67	0	32	0	0.91
21027017--21027249	27	8.6	27	80	2	202	45	22	16	15	1.85
21027017--21027266	81	3.1	80	76	13	260	44	21	17	16	1.86
21027244--21027306	27	2.3	27	83	5	83	30	19	20	30	1.97
21027042--21027292	81	3.1	79	76	12	249	43	20	18	18	1.89
21029465--21029579	45	2.5	44	89	8	169	24	16	15	43	1.87
21029504--21029666	45	3.6	45	87	3	193	20	17	17	44	1.87
21036818--21036844	13	2.1	13	100	0	54	40	14	7	37	1.74
21038173--21038202	11	2.7	11	89	0	51	83	0	3	13	0.77
21040706--21040948	24	10.5	23	72	14	117	43	16	12	27	1.84
21040706--21040950	46	5.3	46	87	0	319	43	16	12	27	1.84
21040782--21040859	21	3.5	22	71	19	63	44	19	10	25	1.82
21041637--21041772	41	3.4	39	83	7	157	32	25	16	25	1.96
21041637--21041793	41	3.9	42	78	12	134	31	25	16	26	1.96
21041620--21041775	81	1.9	83	86	5	228	32	26	14	26	1.95
21051068--21051124	12	4.6	12	78	20	55	22	1	3	71	1.10
21056047--21056078	5	6.8	5	86	13	50	84	0	15	0	0.63
21056024--21056077	9	6.0	9	79	12	58	79	0	16	3	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21056489--21056577	44	2.0	44	91	0	142	30	16	19	33	1.94
21058304--21058360	12	4.6	12	78	20	55	22	1	3	71	1.10
21060944--21061560	332	1.9	332	89	1	977	35	12	21	30	1.91
21068488--21068512	3	8.3	3	100	0	50	68	0	32	0	0.90
21073787--21073950	74	2.2	74	81	2	186	29	19	18	32	1.96
21085346--21085401	26	2.2	26	83	6	69	35	14	7	42	1.73
21093473--21093507	18	1.9	18	94	0	61	77	2	0	20	0.90
21095857--21095908	26	2.0	26	100	0	104	42	19	3	34	1.69
21096334--21096378	20	2.3	19	82	17	56	2	26	0	71	0.98
21096334--21096377	16	2.8	15	86	6	52	2	27	0	70	0.99
21100040--21100136	48	2.0	48	100	0	194	36	14	12	37	1.84
21102215--21102240	8	3.2	8	100	0	52	42	0	0	57	0.98
21102262--21102303	18	2.4	17	88	7	66	47	0	0	52	1.00
21102488--21102516	6	5.0	6	91	8	51	17	0	0	82	0.66
21102488--21102516	11	2.5	12	94	5	51	17	0	0	82	0.66
21103216--21103266	20	2.3	21	83	12	59	68	1	3	25	1.17
21103808--21103836	6	5.0	6	91	8	51	17	0	0	82	0.66
21103808--21103836	11	2.5	12	94	5	51	17	0	0	82	0.66
21104536--21104586	20	2.3	21	83	12	59	68	1	3	25	1.17
21107222--21107255	3	11.3	3	100	0	68	32	0	0	67	0.91
21107649--21107691	22	1.9	23	90	4	70	30	9	9	51	1.65
21109272--21109317	25	2.0	22	84	16	58	36	15	4	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21109722--21109948	117	1.9	117	85	3	314	29	12	13	44	1.80
21110060--21110096	7	5.1	7	96	3	65	70	0	0	29	0.88
21115335--21115399	34	1.9	34	84	12	89	38	1	0	60	1.07
21115680--21115736	22	2.3	25	74	22	66	43	0	1	54	1.10
21121775--21121814	17	2.4	17	84	12	55	60	0	2	37	1.11
21121775--21121819	17	2.7	16	80	12	54	62	0	2	35	1.08
21127570--21127633	30	2.1	31	91	2	103	70	0	1	28	0.97
21129411--21129508	40	2.5	40	91	0	151	8	24	21	45	1.78
21129411--21129508	20	4.9	20	82	8	119	8	24	21	45	1.78
21132849--21132944	49	2.0	48	95	2	174	33	2	17	46	1.60
21141322--21141460	26	5.3	26	83	0	170	32	17	10	39	1.83
21141320--21141459	52	2.7	52	87	0	190	32	17	10	39	1.83
21143813--21143872	3	20.0	3	100	0	120	66	0	0	33	0.92
21144583--21144628	10	4.5	10	83	5	65	8	10	2	78	1.05
21144583--21144628	21	2.2	20	88	3	65	8	10	2	78	1.05
21144595--21144637	21	2.0	21	82	8	52	9	13	0	76	1.01
21145448--21145491	21	2.1	21	95	0	79	45	11	9	34	1.72
21151186--21151446	67	3.9	67	80	3	283	32	19	24	22	1.98
21152933--21152969	19	1.9	19	94	0	65	40	10	21	27	1.86
21159225--21159287	30	2.1	30	96	0	117	23	3	15	57	1.53
21159406--21159446	13	3.1	13	86	6	55	68	0	0	31	0.90
21159810--21159862	22	2.4	22	81	12	72	32	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21161083--21161138	19	2.8	19	81	5	58	50	3	0	46	1.19
21162449--21162496	21	2.3	21	81	0	60	41	12	10	35	1.77
21165714--21166065	115	3.1	116	91	3	568	21	8	21	49	1.76
21165714--21166113	115	3.5	110	86	7	489	21	9	20	49	1.77
21166026--21166218	101	1.8	104	80	11	234	22	8	16	52	1.70
21167101--21167137	18	2.0	18	89	5	56	43	0	5	51	1.24
21167110--21167150	20	2.2	20	86	8	59	41	0	0	58	0.98
21167118--21167158	20	2.1	20	86	4	57	39	0	2	58	1.11
21169917--21169966	22	2.3	22	89	0	82	38	14	20	28	1.91
21172050--21172128	38	2.1	38	93	4	135	29	11	24	35	1.90
21185133--21185168	14	2.6	14	95	0	63	61	0	2	36	1.11
21197512--21197548	9	4.1	9	92	0	65	45	13	10	29	1.77
21198326--21198393	31	2.2	31	84	2	93	39	11	7	41	1.70
21199077--21199130	28	1.9	28	81	7	65	40	11	14	33	1.82
21200275--21200365	3	31.3	3	82	10	118	65	1	2	30	1.11
21203925--21203979	27	2.0	27	92	0	92	21	14	14	49	1.79
21207667--21207691	2	12.5	2	100	0	50	48	0	0	52	1.00
21212619--21212647	2	14.5	2	100	0	58	48	0	0	51	1.00
21222408--21222432	4	6.2	4	100	0	50	24	24	0	52	1.48
21225002--21225034	14	2.3	15	94	5	59	30	12	6	51	1.63
21232710--21232764	13	4.0	13	75	13	56	25	20	32	21	1.97
21233152--21233207	26	2.2	26	86	0	76	30	25	25	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21236389--21236419	9	3.4	9	90	0	53	25	12	22	38	1.90
21236472--21236508	9	4.1	9	92	0	65	45	13	10	29	1.77
21236846--21236902	17	3.4	17	73	22	66	24	40	0	35	1.56
21236844--21236917	33	2.2	33	100	0	148	21	37	0	40	1.54
21236863--21236917	16	3.4	16	72	22	60	18	40	0	41	1.50
21240983--21241228	75	3.3	75	84	2	262	21	21	21	35	1.96
21242979--21243012	16	2.1	16	89	10	52	32	0	0	67	0.91
21244605--21244677	31	2.4	31	80	13	89	42	10	16	30	1.82
21244909--21245039	61	2.1	63	81	4	158	48	7	2	41	1.44
21246444--21246472	6	5.0	6	95	4	51	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85