genome.fa.s5.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  54  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18973366--18973414	18	2.6	18	90	6	71	22	22	2	53	1.57
18981894--18981940	11	4.3	12	75	20	50	51	0	6	42	1.27
18981898--18981938	21	2.0	20	85	4	55	48	0	7	43	1.30
18981975--18982049	37	2.0	38	97	2	143	46	10	2	40	1.53
18982030--18982136	17	6.2	18	69	21	52	53	1	2	42	1.26
18982055--18982136	37	2.3	35	80	15	96	53	2	2	41	1.27
18990788--18990978	50	3.7	50	80	4	193	23	28	22	26	1.99
19003444--19003638	51	3.8	51	79	6	225	22	16	29	31	1.96
19003860--19003891	16	2.0	16	93	0	55	59	0	15	25	1.36
19010025--19010062	19	2.0	19	94	0	67	15	10	7	65	1.45
19010027--19010068	19	2.2	19	86	0	57	19	11	7	61	1.52
19014692--19014723	15	2.1	15	94	0	55	68	9	6	15	1.36
19028334--19028535	29	6.9	29	84	2	235	37	12	26	23	1.91
19028334--19028597	58	4.5	58	83	3	262	37	13	25	23	1.91
19028339--19028601	29	9.0	30	80	1	214	36	13	25	24	1.92
19030345--19030373	14	2.0	15	93	6	51	27	6	27	37	1.82
19043073--19043194	63	1.9	63	88	0	181	30	19	22	27	1.98
19043787--19043841	22	2.5	22	84	0	74	21	21	10	45	1.82
19046918--19046991	21	3.5	21	96	0	130	39	18	17	24	1.92
19050944--19051070	51	2.5	51	89	1	184	30	26	18	24	1.98
19058297--19058386	24	3.6	23	68	26	58	11	20	2	66	1.33
19058371--19058415	18	2.5	18	86	13	58	4	15	4	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19058371--19058404	6	5.5	6	86	6	50	2	14	2	79	0.97
19067235--19067403	85	2.0	85	96	0	311	40	8	25	24	1.84
19068067--19068114	24	2.0	24	100	0	96	41	12	12	33	1.80
19068067--19068123	24	2.5	22	86	8	62	43	12	14	29	1.81
19076052--19076114	25	2.5	26	84	7	76	7	23	1	66	1.27
19076099--19076152	6	9.0	6	88	8	83	3	16	0	79	0.87
19081315--19081443	43	3.0	43	100	0	258	30	20	13	34	1.92
19083223--19083265	2	22.0	2	95	4	79	0	51	0	48	1.00
19086842--19087140	125	2.4	124	93	0	490	31	15	20	32	1.94
19093139--19093382	116	2.1	116	93	1	418	44	6	8	40	1.61
19093376--19093820	23	20.0	23	72	16	250	26	0	24	48	1.53
19093377--19093820	45	9.9	47	75	13	293	26	0	25	48	1.53
19093384--19093600	84	2.5	84	89	5	317	25	0	25	48	1.55
19093456--19093487	15	2.2	15	94	5	57	21	0	21	56	1.43
19093410--19093537	61	2.1	61	91	0	202	25	0	26	47	1.57
19093471--19093820	23	15.5	23	76	13	327	26	0	25	48	1.54
19093492--19093712	67	3.3	67	78	12	229	26	0	27	45	1.57
19093469--19093820	45	7.8	44	76	13	328	25	0	25	48	1.54
19093385--19093780	112	3.6	110	78	12	420	26	0	25	48	1.54
19093377--19093820	68	6.7	66	75	15	337	26	0	25	48	1.53
19093866--19093948	23	3.7	23	81	15	118	25	0	24	50	1.49
19093864--19093955	45	2.0	45	95	4	168	25	0	26	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19094474--19094509	18	2.0	18	94	0	63	38	8	27	25	1.84
19095160--19095184	7	3.6	7	100	0	50	60	12	0	28	1.32
19096611--19096641	5	6.2	5	100	0	62	58	0	0	41	0.98
19101151--19101256	44	2.5	41	76	18	117	36	29	3	30	1.75
19101168--19101256	44	2.0	46	88	4	137	38	29	4	28	1.76
19101238--19101290	16	3.3	16	86	0	70	26	30	3	39	1.74
19101455--19101488	17	2.0	17	88	0	50	38	14	8	38	1.78
19107203--19107265	21	3.0	21	77	9	74	14	25	20	39	1.90
19107195--19107285	42	2.2	42	89	0	137	15	23	19	41	1.89
19115207--19115249	12	3.4	12	90	6	59	67	4	6	20	1.33
19118291--19118422	50	2.6	51	84	3	176	33	16	12	37	1.86
19133116--19133180	32	2.0	32	96	0	121	36	6	1	55	1.34
19159709--19159741	12	2.8	12	95	0	57	30	9	12	48	1.71
19171394--19171514	45	2.7	45	82	0	134	38	15	18	27	1.91
19171483--19171529	21	2.2	22	84	3	60	31	17	23	27	1.96
19172407--19172461	11	4.9	11	80	13	51	43	0	30	25	1.55
19179262--19179483	45	5.0	45	84	1	259	33	23	15	27	1.95
19180742--19180800	29	2.1	28	81	15	68	40	16	0	42	1.49
19184597--19184814	45	4.9	44	78	8	165	33	22	15	27	1.95
19184596--19184811	90	2.4	90	79	3	231	32	23	16	27	1.96
19187820--19187873	21	2.6	21	80	14	67	46	16	20	16	1.84
19188436--19188462	13	2.1	13	100	0	54	74	0	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19189939--19190034	47	2.0	48	97	2	185	56	2	2	39	1.23
19192882--19192930	24	2.0	24	100	0	98	51	16	20	12	1.76
19196652--19196712	31	2.0	31	96	0	113	47	19	9	22	1.79
19197020--19197062	22	2.0	22	95	0	77	9	20	27	41	1.83
19197107--19197273	43	3.9	43	89	1	244	31	31	17	19	1.95
19197107--19197273	87	1.9	86	87	1	244	31	31	17	19	1.95
19197106--19197294	87	2.2	85	83	3	243	32	30	17	19	1.95
19197106--19197294	43	4.4	42	87	3	234	32	30	17	19	1.95
19199942--19200309	142	2.6	142	97	0	691	32	11	16	39	1.84
19200189--19200433	124	2.0	123	84	8	327	36	11	14	37	1.82
19202299--19202376	41	1.9	41	97	0	147	26	29	21	21	1.99
19202412--19202544	40	3.4	38	74	9	126	19	21	23	36	1.95
19206051--19206096	19	2.4	20	75	10	51	54	0	4	41	1.20
19206268--19206330	19	3.4	18	91	4	74	38	7	19	34	1.81
19206270--19206323	19	2.8	19	97	0	99	37	9	16	37	1.81
19206283--19206346	19	3.0	22	86	8	80	37	6	17	39	1.75
19206312--19206356	23	2.0	23	86	4	65	33	4	15	46	1.66
19206522--19206560	19	2.0	21	85	10	55	15	10	5	69	1.34
19212152--19212241	29	3.1	29	71	15	96	24	25	20	30	1.99
19212233--19212303	31	2.3	31	87	0	97	35	30	14	19	1.91
19212343--19212402	28	2.1	28	90	0	93	25	33	13	28	1.93
19212203--19212442	91	2.7	88	82	5	252	28	30	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19214274--19214370	38	2.6	38	83	0	131	30	20	17	30	1.96
19235588--19235622	16	2.1	18	89	10	56	2	14	0	82	0.77
19236669--19236704	16	2.2	17	90	5	56	33	11	11	44	1.75
19237877--19237917	20	2.0	20	85	4	55	53	0	0	46	1.00
19238918--19238971	24	2.2	25	78	18	60	37	1	3	57	1.27
19244565--19244658	35	2.7	35	77	0	98	20	26	21	31	1.98
19248771--19248824	20	2.8	20	88	2	74	48	11	12	27	1.76
19252044--19252228	43	4.3	43	77	2	194	19	15	25	40	1.90
19252042--19252228	86	2.2	86	88	3	279	19	14	25	40	1.90
19256042--19256066	13	1.9	13	100	0	50	32	4	24	40	1.73
19257183--19257298	44	2.7	44	81	15	127	24	17	27	31	1.97
19259694--19259747	24	2.2	24	84	12	67	5	20	3	70	1.23
19264568--19264606	19	2.0	21	85	10	55	46	10	0	43	1.37
19265294--19265362	34	2.0	34	97	0	129	33	21	17	27	1.96
19270665--19270822	35	4.5	35	89	1	228	39	31	11	17	1.85
19270665--19270822	69	2.3	69	88	1	226	39	31	11	17	1.85
19275107--19275147	16	2.5	16	88	4	55	26	36	0	36	1.57
19277871--19277922	25	2.1	25	85	7	70	67	3	1	26	1.18
19278205--19278383	89	2.0	92	82	5	222	39	7	15	36	1.77
19283184--19283256	37	2.0	36	84	7	94	32	2	2	61	1.24
19283768--19283839	28	2.7	26	76	8	72	43	0	1	55	1.08
19288983--19289108	60	2.1	62	90	3	202	45	10	15	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19291245--19291367	61	2.0	62	93	1	212	36	12	21	29	1.90
19293175--19293224	24	2.1	24	100	0	100	46	0	20	34	1.51
19293162--19293229	24	2.5	28	75	20	81	47	0	19	33	1.50
19299655--19299946	50	5.7	50	83	3	300	27	21	28	22	1.99
19299655--19299897	100	2.4	104	86	4	332	26	21	30	22	1.99
19299661--19299946	150	1.9	152	81	6	355	27	20	29	22	1.98
19300146--19300184	12	3.2	12	85	0	51	51	5	23	20	1.67
19306999--19307042	19	2.2	21	92	8	74	25	4	22	47	1.70
19307012--19307054	19	2.3	19	87	0	59	23	9	16	51	1.73
19312380--19312419	20	2.0	20	100	0	80	45	10	0	45	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85