genome.fa.s5.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  77  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26701935--26701969	17	1.9	19	88	11	56	45	0	25	28	1.54
26702055--26702140	21	4.0	22	73	15	63	16	19	24	39	1.91
26702432--26702469	18	2.1	18	85	9	51	50	2	10	36	1.51
26705420--26705674	129	2.0	132	84	2	345	23	29	20	26	1.99
26705424--26705674	43	5.8	43	82	3	297	23	30	20	26	1.98
26710471--26710551	7	11.3	7	76	10	67	46	35	0	17	1.48
26710472--26710647	14	12.3	14	71	13	99	46	32	0	20	1.55
26710496--26710551	8	7.5	8	78	9	57	46	37	0	16	1.47
26710473--26710549	29	2.7	29	97	2	147	49	35	0	15	1.45
26710587--26710647	7	8.6	7	80	3	68	50	27	0	21	1.49
26710599--26710642	15	3.0	15	86	3	63	47	34	0	18	1.49
26710668--26710701	14	2.4	14	90	0	50	52	32	0	14	1.42
26710785--26710847	30	2.1	29	94	2	108	53	19	6	20	1.66
26710937--26711113	41	4.3	41	83	5	200	31	28	19	20	1.97
26710955--26711113	41	3.9	41	87	0	228	28	29	20	22	1.98
26711220--26711299	42	1.9	42	84	0	106	26	23	15	35	1.94
26715908--26716293	32	12.1	32	94	2	695	27	27	19	25	1.99
26723283--26723468	50	3.6	50	80	4	174	24	27	18	29	1.98
26733077--26733127	24	2.1	24	85	0	66	21	29	7	41	1.81
26738125--26738170	24	1.9	24	81	0	56	50	10	15	23	1.75
26740363--26740398	2	18.0	2	100	0	72	50	0	50	0	1.00
26743374--26743405	14	2.1	16	88	11	50	68	3	3	25	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26746602--26746631	11	2.9	10	90	9	51	40	43	0	16	1.48
26749077--26749110	17	2.0	17	100	0	68	52	5	17	23	1.66
26750279--26750544	35	7.4	34	68	13	111	22	21	22	33	1.97
26750277--26750544	109	2.5	109	82	3	317	22	21	22	33	1.97
26755246--26755308	31	2.0	32	96	3	119	23	28	9	38	1.86
26766134--26766210	38	2.0	38	100	0	154	23	18	23	35	1.96
26767619--26767686	33	2.1	33	94	0	118	35	14	17	32	1.91
26771523--26771588	33	2.0	33	93	0	114	34	7	18	39	1.79
26774457--26774529	38	1.9	37	86	8	103	31	21	1	45	1.61
26774517--26774560	23	1.9	22	82	17	54	38	22	0	38	1.55
26774620--26774798	45	4.0	45	90	1	254	32	25	16	25	1.96
26778959--26779031	38	1.9	37	86	8	103	31	21	1	45	1.61
26779019--26779062	23	1.9	22	82	17	54	38	25	0	36	1.56
26779148--26779308	45	3.6	45	89	2	236	34	27	17	20	1.95
26782201--26782273	26	2.8	27	87	4	96	38	21	19	20	1.94
26782435--26782788	27	13.1	26	74	11	128	20	16	19	42	1.89
26782474--26782783	81	3.8	81	81	3	356	20	16	20	42	1.89
26782438--26782783	54	6.4	54	77	4	313	20	16	19	42	1.89
26790824--26790875	10	5.0	10	81	11	52	63	0	1	34	1.06
26790824--26790876	21	2.5	22	76	14	58	62	0	1	35	1.06
26794630--26794705	40	1.9	40	91	0	125	28	21	26	23	1.99
26794804--26795032	41	5.9	39	74	15	161	22	20	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26794803--26795006	41	5.2	39	76	16	174	21	20	31	26	1.98
26794884--26795035	74	2.1	74	94	0	268	21	21	30	26	1.98
26794925--26794991	33	2.0	33	83	11	84	19	20	31	28	1.97
26795219--26795401	75	2.4	74	93	3	305	20	2	30	46	1.62
26795348--26795494	7	20.6	7	74	10	84	21	0	31	46	1.51
26795219--26795494	14	18.9	14	69	16	123	21	1	31	46	1.60
26795351--26795494	29	5.0	29	74	9	116	21	0	32	45	1.52
26809593--26809620	12	2.3	12	100	0	56	7	21	42	28	1.79
26810670--26810745	30	2.5	30	84	0	107	26	27	10	35	1.89
26810730--26810925	30	6.5	30	71	9	130	21	25	12	40	1.88
26810730--26810925	60	3.3	59	70	6	160	21	25	12	40	1.88
26810850--26810923	29	2.5	30	82	2	87	20	27	9	43	1.82
26827710--26827953	50	4.9	50	84	1	240	27	22	29	20	1.99
26828154--26828202	20	2.5	20	81	15	66	57	6	24	12	1.58
26831104--26831132	13	2.1	14	93	6	51	24	10	0	65	1.23
26835774--26835799	12	2.2	12	100	0	52	23	30	30	15	1.95
26840070--26840129	27	2.2	27	84	0	75	20	16	25	38	1.93
26840082--26840437	27	13.2	27	79	2	324	17	17	19	45	1.85
26847404--26847480	26	3.0	26	88	0	100	37	22	22	18	1.94
26847638--26847957	27	11.9	28	79	9	283	18	18	17	45	1.86
26847643--26847957	54	5.9	53	80	5	330	18	18	17	45	1.86
26847646--26847956	161	1.9	161	86	3	448	18	18	16	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26851530--26851572	16	2.7	16	88	0	68	27	6	30	34	1.83
26853831--26853911	36	2.2	36	91	2	126	50	8	11	29	1.67
26859970--26860119	74	2.0	74	97	0	282	26	21	21	30	1.98
26874255--26874453	29	6.8	29	86	4	258	22	27	14	36	1.92
26880237--26880326	29	3.1	29	84	6	128	20	25	12	42	1.86
26881682--26881706	8	3.1	8	100	0	50	24	0	0	76	0.80
26886278--26886314	7	5.6	7	90	9	60	10	16	0	72	1.10
26886278--26886314	13	2.8	13	88	11	58	10	16	0	72	1.10
26887420--26887490	28	2.6	28	88	6	110	19	18	28	33	1.95
26894208--26894240	12	2.6	13	85	4	50	66	0	0	33	0.92
26898789--26898903	20	5.8	20	74	4	106	34	20	33	12	1.89
26899653--26899708	28	1.9	29	82	13	71	42	21	3	32	1.70
26903712--26903771	19	3.2	19	71	17	54	16	5	3	75	1.12
26906958--26907011	25	2.2	25	86	6	74	20	27	20	31	1.97
26912182--26912678	94	5.3	94	83	2	556	27	21	17	33	1.96
26912364--26912511	44	3.2	44	70	23	133	24	23	20	31	1.98
26912182--26912678	188	2.7	187	85	4	612	27	21	17	33	1.96
26930839--26930894	19	2.9	19	75	17	53	53	0	0	46	1.00
26936618--26936712	31	3.1	31	79	0	109	22	21	13	43	1.87
26938716--26938788	27	2.7	27	84	0	92	36	10	23	28	1.89
26947684--26947805	63	1.9	63	91	0	199	25	22	14	36	1.93
26948191--26948417	113	2.0	113	95	0	409	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26956482--26956520	12	3.2	12	85	0	51	20	23	5	51	1.67
26956771--26957009	50	4.7	50	81	3	253	23	28	20	27	1.99
26959735--26959806	25	2.9	25	82	0	90	22	26	22	29	1.99
26961481--26961579	49	2.0	50	98	2	191	24	15	24	36	1.93
26971093--26971120	14	2.0	14	100	0	56	50	28	0	21	1.49
26975369--26975420	25	2.0	27	85	7	72	15	3	5	75	1.14
26979292--26979344	23	2.3	22	73	20	54	73	0	1	24	0.93
26979571--26979610	17	2.2	17	86	8	53	52	12	5	30	1.60
27004557--27004641	28	3.0	28	87	0	116	27	22	25	24	2.00
27005021--27005440	27	15.6	27	78	10	373	22	14	19	44	1.87
27005007--27005440	54	8.1	53	81	7	448	22	14	18	44	1.87
27005007--27005440	81	5.4	81	83	6	485	22	14	18	44	1.87
27008010--27008047	20	2.1	18	85	14	51	57	13	0	28	1.36
27012879--27012935	24	2.4	25	83	13	75	52	0	7	40	1.28
27020599--27020649	24	2.1	25	82	7	61	62	5	3	27	1.36
27034208--27034343	50	2.7	51	83	8	179	27	16	26	30	1.97
27034352--27034442	45	2.0	45	91	0	146	23	18	27	30	1.98
27035985--27036026	18	2.3	19	79	4	50	38	2	23	35	1.68
27039584--27039709	68	1.9	66	80	6	146	37	21	6	34	1.79
27039744--27039907	69	2.4	69	81	11	167	36	17	7	39	1.77
27039927--27040412	94	5.2	94	73	8	366	33	18	7	40	1.80
27039814--27040415	277	2.2	274	85	5	800	34	18	7	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27041111--27041156	21	2.2	21	92	0	74	23	21	17	36	1.94
27046190--27046231	22	1.9	22	85	0	57	47	0	4	47	1.23
27050464--27050512	24	2.0	24	96	0	89	34	6	16	42	1.73
27051127--27051171	23	2.0	23	95	0	81	33	22	2	42	1.66
27064687--27064745	22	2.6	22	76	10	57	28	0	5	66	1.13
27069802--27069889	31	2.8	31	89	0	104	23	7	22	45	1.79
27069821--27069877	17	3.5	17	67	13	57	19	8	26	45	1.79
27079603--27079669	22	2.8	24	73	15	68	35	29	7	26	1.84
27083333--27083396	17	3.5	17	75	19	65	37	28	15	18	1.92
27089256--27089356	40	2.5	40	88	0	139	31	15	21	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85