genome.fa.s5.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  68  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23619463--23619525	30	2.2	28	86	10	92	68	0	1	30	0.99
23622158--23622214	24	2.4	24	96	0	105	24	31	10	33	1.89
23627906--23627996	39	2.3	40	83	7	114	43	9	3	42	1.54
23628871--23628909	20	2.0	20	89	0	60	30	10	10	48	1.70
23636389--23636500	58	1.9	58	94	3	199	26	23	17	32	1.97
23636486--23636626	40	3.5	40	91	2	212	35	2	0	61	1.11
23636566--23636626	31	2.0	31	90	6	97	37	1	0	60	1.07
23637750--23637793	20	2.2	20	91	0	70	43	15	6	34	1.74
23637872--23637924	16	3.2	16	94	5	97	24	0	37	37	1.56
23641212--23641246	18	1.9	18	100	0	70	60	0	28	11	1.32
23644468--23644506	13	3.1	13	81	7	53	41	0	0	58	0.98
23647043--23647236	90	2.1	91	98	0	372	52	3	6	38	1.42
23655526--23655553	7	4.0	7	100	0	56	57	0	14	28	1.38
23656131--23656164	16	2.1	17	88	5	52	58	2	0	38	1.13
23657016--23657088	20	3.7	19	68	15	58	35	4	1	58	1.25
23668760--23668808	19	2.6	19	87	12	66	14	14	10	61	1.57
23668740--23668808	20	3.5	20	78	11	79	15	14	11	57	1.64
23670228--23670353	43	2.9	43	78	9	123	32	19	23	23	1.98
23670373--23670454	44	1.9	42	82	9	103	43	18	15	21	1.87
23671487--23671528	15	2.9	15	79	17	52	42	4	0	52	1.22
23671471--23671528	29	2.0	29	82	0	71	41	5	3	50	1.42
23671491--23671528	14	2.6	15	84	16	53	44	5	0	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23672147--23672239	20	4.6	21	74	12	79	21	19	6	52	1.68
23672147--23672246	21	5.0	21	73	14	79	21	19	8	52	1.71
23672426--23672471	19	2.3	20	88	3	67	10	15	4	69	1.32
23680920--23680946	6	4.5	6	100	0	54	29	18	37	14	1.91
23681755--23681786	4	8.0	4	92	0	55	25	3	0	71	1.00
23689651--23689687	20	1.9	19	89	10	58	48	0	2	48	1.15
23690670--23690920	123	2.0	124	98	1	486	44	13	8	33	1.75
23698905--23698935	3	10.3	3	100	0	62	64	0	0	35	0.94
23699475--23699569	19	4.8	19	88	5	127	38	13	9	37	1.78
23702139--23702246	25	4.3	25	80	4	74	17	24	21	37	1.94
23702189--23702294	25	4.2	25	75	7	90	23	23	21	31	1.99
23702162--23702294	50	2.7	50	82	4	144	22	23	21	33	1.98
23702214--23702313	50	2.0	50	80	7	114	26	25	17	32	1.97
23724476--23724513	13	2.9	13	84	0	58	42	18	5	34	1.73
23731120--23731279	79	2.0	79	100	0	320	46	5	7	40	1.54
23734587--23734864	137	2.0	138	99	0	549	36	15	12	36	1.84
23735526--23735592	34	1.9	35	84	3	91	32	10	11	44	1.75
23740689--23740720	16	2.0	16	100	0	64	56	6	31	6	1.49
23744244--23744342	41	2.4	42	84	5	130	21	20	21	37	1.95
23746566--23746621	27	2.0	28	96	3	105	28	25	14	32	1.94
23748872--23749053	9	20.9	9	76	8	162	31	2	20	45	1.63
23748865--23749053	34	5.4	35	76	9	149	31	2	20	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23749033--23749114	37	2.2	37	89	2	121	37	4	9	47	1.58
23749102--23749140	20	2.0	20	94	0	69	46	5	5	43	1.48
23751440--23751782	147	2.3	146	81	2	384	37	21	13	27	1.91
23751970--23752006	19	1.9	19	94	0	65	29	29	13	27	1.94
23752609--23752662	25	2.2	25	82	0	63	38	12	0	48	1.42
23752620--23752669	25	2.0	25	100	0	100	36	8	0	56	1.29
23753212--23753595	114	3.4	111	78	8	391	27	27	21	23	1.99
23753628--23753718	40	2.3	40	96	0	173	17	27	23	31	1.97
23753628--23753734	40	2.7	40	89	2	144	17	26	25	30	1.97
23754431--23754564	59	2.2	61	80	10	152	35	17	6	40	1.76
23755058--23755188	57	2.3	55	80	8	131	40	12	11	35	1.79
23755386--23755420	18	1.9	18	94	0	61	54	2	0	42	1.15
23762485--23762524	3	13.7	3	85	15	57	37	0	0	62	0.95
23770061--23770110	25	2.0	25	84	7	66	50	0	8	42	1.32
23771869--23771903	17	1.9	19	88	11	56	65	11	2	20	1.37
23778140--23778183	21	2.1	21	86	0	61	40	11	13	34	1.81
23779168--23779210	23	2.0	21	86	13	61	65	2	0	32	1.06
23779275--23779323	11	4.5	11	76	0	53	67	6	2	24	1.24
23779281--23779326	22	2.2	22	84	7	60	69	4	2	23	1.17
23783550--23783947	45	8.8	45	85	1	510	30	13	22	33	1.93
23785478--23785523	3	15.0	3	86	4	65	36	0	0	63	0.95
23785469--23785520	25	2.1	25	85	0	68	34	3	0	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23788634--23788665	16	2.0	16	93	0	55	43	15	6	34	1.72
23795954--23795985	11	3.1	11	91	8	50	65	6	0	28	1.16
23800219--23800332	44	2.6	44	95	0	210	38	13	5	42	1.66
23800237--23800307	22	3.2	22	63	21	58	42	11	7	39	1.68
23800783--23800859	13	5.9	13	89	0	118	40	24	9	25	1.85
23803657--23803691	16	2.3	15	95	5	61	37	8	20	34	1.83
23816680--23816740	21	2.9	21	83	11	72	47	4	6	40	1.51
23816675--23816727	21	2.6	21	88	8	74	45	3	5	45	1.45
23816822--23816882	21	2.9	21	83	11	72	47	4	6	40	1.51
23816817--23816869	21	2.6	21	88	8	74	45	3	5	45	1.45
23816644--23816929	142	2.0	143	99	0	565	49	5	7	37	1.55
23825937--23826001	14	4.7	14	74	16	55	49	6	4	40	1.48
23827656--23827698	23	1.9	22	86	13	61	67	11	0	20	1.22
23828811--23829115	43	7.2	42	71	12	207	28	22	21	27	1.99
23828811--23829202	126	3.1	126	92	1	615	28	21	20	28	1.98
23829207--23829502	50	5.9	49	75	6	200	26	24	20	28	1.99
23829208--23829466	100	2.6	100	87	3	362	25	25	20	27	1.99
23829292--23829564	150	1.8	149	87	0	402	24	23	21	29	1.99
23829292--23829516	50	4.5	50	79	2	254	25	23	20	30	1.99
23829652--23829835	100	1.8	100	83	2	244	26	24	21	28	1.99
23829863--23830039	88	2.0	88	88	2	266	24	25	22	27	2.00
23831269--23831306	13	2.8	13	88	4	58	10	15	2	71	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23836978--23837020	23	1.9	22	86	13	61	67	11	0	20	1.22
23837446--23837493	20	2.4	20	86	6	62	66	2	6	25	1.26
23842337--23842562	41	5.5	41	91	0	362	37	22	15	24	1.93
23852929--23852981	15	3.5	15	74	5	52	16	9	18	54	1.69
23853226--23853268	5	8.6	5	85	10	61	34	0	0	65	0.93
23853468--23853510	5	8.6	5	85	10	61	34	0	0	65	0.93
23853174--23853660	242	2.0	243	99	0	967	40	11	5	41	1.66
23855141--23855194	23	2.3	23	87	0	81	22	40	3	33	1.71
23860824--23861119	43	6.9	43	78	5	240	23	27	21	28	1.99
23860824--23861119	86	3.5	84	74	6	272	23	27	21	28	1.99
23861311--23861348	19	2.0	19	94	0	67	57	2	10	28	1.45
23871475--23871664	41	4.6	41	78	6	170	35	23	24	16	1.94
23871515--23871689	41	4.3	41	86	0	197	36	23	24	15	1.93
23871516--23871689	82	2.1	82	84	0	222	36	22	24	15	1.93
23871616--23871753	41	3.4	41	80	4	136	35	23	21	19	1.96
23879660--23879705	21	2.2	21	84	7	58	63	0	0	36	0.95
23892001--23892088	26	3.3	26	91	1	140	39	13	12	34	1.83
23892042--23892100	26	2.3	26	82	5	66	35	16	11	35	1.86
23899786--23899899	51	2.2	49	80	8	129	29	17	7	44	1.77
23900486--23900515	15	1.9	16	93	6	53	26	0	0	73	0.84
23901921--23901974	23	2.3	23	100	0	108	24	14	16	44	1.85
23902075--23902441	181	2.0	183	98	1	720	46	6	9	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23909205--23909431	126	1.8	125	84	6	316	33	16	16	33	1.92
23911382--23911451	34	2.1	34	100	0	140	30	25	18	25	1.98
23911566--23911842	44	6.4	44	74	11	241	26	19	23	30	1.98
23911561--23911716	85	1.8	85	84	0	213	26	20	23	29	1.99
23911566--23911848	129	2.2	129	89	0	422	26	19	23	30	1.98
23912992--23913063	27	2.7	27	93	4	85	2	27	2	66	1.19
23916210--23916256	19	2.5	20	86	6	62	42	10	21	25	1.85
23928616--23928642	14	1.9	14	100	0	54	18	14	0	66	1.25
23938670--23938730	23	2.6	23	84	7	70	49	0	1	49	1.10
23938682--23938730	23	2.1	23	88	7	73	51	0	2	46	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85