genome.fa.s5.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  82  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28610700--28610724	13	1.9	13	100	0	50	60	0	0	40	0.97
28613364--28613391	14	2.0	14	100	0	56	42	14	28	14	1.84
28633553--28633606	28	1.9	28	96	0	99	42	3	18	35	1.68
28637518--28637570	2	27.0	2	96	3	99	49	0	50	0	1.00
28641104--28641136	15	2.1	16	88	5	50	39	0	0	60	0.97
28650630--28650664	6	5.8	6	89	0	52	8	34	20	37	1.83
28650630--28650664	18	1.9	18	94	0	61	8	34	20	37	1.83
28655236--28655284	18	2.7	18	83	0	62	32	4	30	32	1.77
28671037--28671071	15	2.2	16	90	5	54	57	2	0	40	1.14
28679438--28679966	269	2.0	269	84	3	697	37	9	15	38	1.80
28688003--28688039	18	2.1	18	89	0	56	40	0	2	56	1.13
28688444--28688489	22	2.1	22	95	0	83	45	4	19	30	1.70
28695550--28695611	30	2.0	30	81	3	70	58	6	1	33	1.34
28695671--28695703	3	11.0	3	100	0	66	33	0	0	66	0.92
28696252--28696311	31	1.9	31	86	6	86	38	8	13	40	1.75
28697640--28697701	30	2.0	30	81	3	70	58	6	1	33	1.34
28697761--28697793	3	11.0	3	100	0	66	33	0	0	66	0.92
28698342--28698401	31	1.9	31	86	6	86	38	8	13	40	1.75
28701305--28701365	28	2.2	27	82	8	70	54	0	1	44	1.10
28702728--28702841	60	1.9	59	83	1	147	37	10	12	39	1.77
28708550--28708604	23	2.4	23	100	0	110	43	3	9	43	1.53
28715219--28715260	21	2.0	21	100	0	84	33	9	28	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28738288--28738330	15	2.9	15	92	0	68	39	16	39	4	1.69
28751673--28751757	31	3.0	27	75	18	82	45	7	11	35	1.68
28752083--28752127	23	2.0	22	83	12	56	48	2	2	46	1.26
28757486--28757511	13	2.0	13	100	0	52	46	15	15	23	1.83
28777325--28777359	18	2.0	17	94	5	61	42	0	0	57	0.99
28785421--28785455	18	1.9	18	88	0	52	62	0	5	31	1.18
28794982--28795061	39	2.1	39	95	0	142	38	2	22	36	1.68
28799524--28799558	16	2.2	16	94	0	61	54	0	2	42	1.15
28800636--28800661	5	5.2	5	100	0	52	19	61	19	0	1.35
28811198--28811236	20	2.0	20	85	10	53	38	7	12	41	1.72
28811715--28812171	231	2.0	231	91	1	736	36	15	10	37	1.82
28812114--28812361	118	2.1	117	92	2	408	39	8	12	39	1.74
28816061--28816110	26	1.9	26	91	0	82	50	10	6	34	1.60
28820392--28820422	11	2.8	11	90	0	53	61	3	0	35	1.12
28820395--28820459	28	2.2	29	86	5	87	64	1	3	30	1.18
28820455--28820479	7	3.6	7	100	0	50	88	0	0	12	0.53
28831913--28831955	2	22.5	2	90	9	72	48	0	0	51	1.00
28832783--28832840	29	2.0	29	86	6	82	32	6	20	39	1.79
28835772--28835831	20	3.0	20	76	16	61	50	1	1	46	1.21
28855326--28855366	12	3.6	11	87	12	57	56	0	2	41	1.13
28860674--28860701	2	14.0	2	100	0	56	50	0	0	50	1.00
28881154--28881197	20	2.2	20	96	4	81	38	4	0	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28895012--28895052	21	2.0	21	85	0	55	56	24	12	7	1.61
28898438--28898462	10	2.5	10	100	0	50	20	24	0	56	1.43
28899131--28899171	21	1.9	21	85	5	55	0	46	0	53	1.00
28901428--28901453	7	3.7	7	100	0	52	57	11	15	15	1.65
28906458--28906556	28	3.5	27	86	6	135	38	11	1	49	1.45
28906635--28906721	27	3.2	27	95	0	147	26	28	27	17	1.97
28911653--28911790	18	6.9	19	74	20	97	0	33	0	66	0.92
28911638--28911771	44	3.4	38	75	18	130	0	31	0	67	0.96
28911684--28911804	8	14.5	8	67	20	52	0	33	0	66	0.92
28911628--28911804	44	4.0	44	77	15	127	0	32	0	67	0.95
28911676--28911804	26	5.1	25	68	21	65	0	34	0	65	0.93
28911694--28911774	33	2.4	34	82	9	105	0	33	0	66	0.92
28911686--28911787	37	2.7	37	80	15	111	0	34	0	65	0.93
28911677--28911800	23	5.3	23	69	23	71	0	33	0	66	0.92
28911625--28911802	18	9.6	18	70	21	93	0	31	0	67	0.95
28911838--28911904	27	2.5	27	95	0	116	14	26	29	28	1.96
28911972--28912041	28	2.5	28	95	0	122	47	1	12	38	1.51
28931669--28931708	21	1.9	21	89	0	62	55	15	0	30	1.41
28936226--28936304	28	2.8	28	94	1	131	77	11	3	7	1.11
28944746--28944780	18	1.9	18	94	0	61	71	2	0	25	1.00
28944752--28944790	18	2.2	18	85	0	51	71	5	0	23	1.05
28952507--28952540	12	2.8	12	90	0	50	5	41	20	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28957500--28957524	2	12.5	2	100	0	50	48	0	0	52	1.00
28958510--28958572	25	2.6	25	78	12	60	30	22	25	22	1.99
28960878--28960943	30	2.2	30	88	0	96	22	31	25	19	1.98
28962476--28962522	5	9.2	5	81	4	58	38	17	0	44	1.48
28969150--28969337	25	7.5	25	69	11	98	34	20	23	21	1.97
28969231--28969337	26	4.2	26	73	12	105	38	18	20	22	1.94
28969222--28969325	51	2.0	52	90	1	165	36	20	21	22	1.95
28969231--28969337	51	2.1	51	85	3	144	38	18	20	22	1.94
28975740--28975858	41	2.9	41	87	0	166	21	25	17	36	1.95
28982657--28982733	24	3.2	24	88	0	109	32	19	27	20	1.97
28987204--28987399	99	2.0	99	100	0	392	41	25	9	24	1.84
28990559--28990604	24	1.9	24	81	0	56	36	19	23	19	1.95
28990662--28990728	26	2.6	26	81	6	75	37	19	22	20	1.95
28996462--28996720	101	2.6	101	85	2	326	27	24	16	32	1.96
28997427--28997456	2	15.0	2	92	0	51	0	46	0	53	1.00
29014741--29014802	3	21.0	3	93	3	108	66	0	1	32	1.02
29015161--29015225	30	2.2	30	94	0	112	26	30	4	38	1.76
29017225--29017265	21	2.0	20	90	4	64	34	41	14	9	1.79
29020534--29020711	98	1.8	96	90	2	284	29	18	19	33	1.95
29020814--29020927	34	3.4	32	76	8	111	43	12	0	42	1.48
29020969--29021041	21	3.5	20	66	5	56	46	24	0	28	1.53
29021605--29021666	3	20.7	3	83	0	70	56	1	35	6	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29021605--29021667	21	3.0	21	85	0	81	55	1	36	6	1.35
29030225--29030272	20	2.3	20	86	10	62	29	2	0	68	1.01
29030287--29030330	22	2.0	22	87	12	65	50	2	2	45	1.27
29030708--29030736	4	7.2	4	100	0	58	75	0	0	24	0.80
29049132--29049180	24	2.1	24	81	11	57	28	8	0	63	1.23
29053724--29053782	30	2.0	30	86	3	84	35	11	11	40	1.79
29056472--29056540	31	2.2	32	80	12	81	36	11	11	40	1.78
29061945--29061983	21	1.9	20	84	5	51	43	12	5	38	1.65
29064570--29064633	32	2.0	32	100	0	128	40	12	31	15	1.85
29072095--29072202	53	2.0	53	100	0	216	32	16	9	41	1.80
29079651--29079682	10	3.1	11	86	13	50	37	0	0	62	0.95
29081016--29081041	13	2.0	13	100	0	52	23	15	15	46	1.83
29084699--29084802	52	2.0	52	96	0	190	44	9	7	38	1.66
29084698--29084784	24	3.4	25	69	23	74	44	8	6	40	1.61
29094507--29094571	21	3.1	21	86	2	96	20	24	13	41	1.88
29098392--29098425	1	34.0	1	100	0	68	100	0	0	0	0.00
29102142--29102197	12	4.7	12	76	14	53	80	3	3	12	0.97
29103004--29103166	84	1.9	85	82	1	202	28	20	20	30	1.97
29104109--29104271	84	1.9	85	82	1	202	28	20	20	30	1.97
29121248--29121289	21	2.0	21	85	0	57	42	0	16	40	1.48
29124659--29124697	15	2.4	16	87	8	53	35	0	0	64	0.94
29125885--29126201	158	2.0	159	99	0	627	41	9	12	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29132395--29132443	21	2.3	21	82	6	55	46	6	4	42	1.47
29135124--29135179	29	1.9	29	81	0	67	51	7	1	39	1.40
29144546--29144582	15	2.5	15	86	0	56	32	16	0	51	1.45
29144791--29144926	60	2.3	60	81	2	166	37	10	21	30	1.87
29145483--29145514	15	2.1	16	94	5	57	53	6	0	40	1.26
29157606--29157642	13	2.8	13	87	0	56	27	13	24	35	1.93
29160245--29160473	111	2.1	112	98	0	442	34	19	18	28	1.95
29161282--29161478	85	2.3	87	84	5	265	38	22	9	29	1.86
29161670--29161722	10	5.0	10	75	11	52	32	1	0	66	1.03
29161769--29161931	80	2.0	78	90	6	256	30	11	22	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85