genome.fa.s5.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  52  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18116232--18116380	69	2.2	68	82	8	185	38	6	21	33	1.80
18117638--18118051	185	2.2	184	87	2	598	41	7	25	25	1.82
18118349--18118431	8	9.8	8	70	14	51	33	4	1	60	1.26
18118402--18118467	19	3.3	19	81	12	71	37	0	4	57	1.19
18121483--18121516	8	4.2	8	96	0	59	26	14	14	44	1.84
18124398--18124509	60	1.9	57	83	5	143	50	1	2	44	1.26
18124429--18124512	12	7.0	12	73	15	66	50	0	2	47	1.14
18138531--18138743	75	2.8	76	85	4	279	31	24	19	23	1.98
18138644--18138910	102	2.6	102	94	0	453	31	26	19	22	1.97
18138849--18138951	41	2.5	42	90	3	163	33	27	16	23	1.96
18147656--18147698	17	2.5	17	92	0	77	46	16	25	11	1.80
18148567--18148612	22	2.0	23	87	4	67	43	8	4	43	1.55
18148890--18149162	136	2.0	137	97	2	523	38	6	5	50	1.50
18149609--18149834	2	113.0	2	99	0	443	0	49	0	50	1.00
18151109--18151156	2	24.0	2	95	0	87	0	47	0	52	1.00
18151919--18152144	2	113.0	2	99	0	443	0	49	0	50	1.00
18154870--18154937	13	5.0	13	75	21	59	29	4	26	39	1.75
18160131--18160159	14	2.1	14	100	0	58	13	27	10	48	1.75
18161131--18161168	17	2.2	17	90	0	58	36	0	2	60	1.11
18164264--18164288	6	4.2	6	100	0	50	32	0	0	68	0.90
18176093--18176145	24	2.2	24	86	0	70	58	5	1	33	1.32
18176087--18176164	36	2.3	33	80	10	93	62	3	2	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18177777--18178063	44	6.6	44	70	9	149	27	21	19	30	1.98
18177777--18177892	45	2.6	44	83	1	133	25	24	20	29	1.99
18177743--18178150	173	2.4	174	86	2	554	27	22	19	30	1.98
18178161--18178554	98	4.0	99	89	1	576	26	23	20	29	1.99
18178161--18178537	197	1.9	198	89	1	587	27	23	20	28	1.99
18178184--18178562	50	7.7	50	68	6	207	26	24	20	29	1.99
18178825--18178968	44	3.3	43	74	7	128	29	23	22	24	1.99
18178779--18179016	88	2.7	88	90	1	352	27	24	21	26	1.99
18180250--18180298	7	7.0	7	82	17	66	14	16	0	69	1.19
18180250--18180298	21	2.3	21	89	6	73	14	16	0	69	1.19
18187069--18187172	47	2.2	46	86	6	138	54	5	2	36	1.39
18188337--18188365	15	1.9	15	100	0	58	17	20	27	34	1.95
18188380--18188442	33	1.9	32	87	3	90	11	9	34	44	1.73
18192910--18192950	17	2.3	18	84	12	50	58	14	0	26	1.37
18193377--18193428	24	2.2	24	92	0	86	55	7	1	34	1.39
18195338--18195389	24	2.2	24	85	0	68	53	9	3	32	1.51
18198361--18198386	13	2.0	13	100	0	52	7	15	23	53	1.67
18204165--18204198	13	2.6	13	90	0	50	64	0	11	23	1.26
18211747--18211783	7	5.1	7	87	6	56	81	0	13	5	0.86
18211747--18211783	15	2.6	14	86	4	56	81	0	13	5	0.86
18215471--18215515	18	2.4	17	82	17	54	37	4	0	57	1.19
18220087--18220112	13	2.0	13	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18222433--18222538	43	2.5	43	93	0	176	20	17	21	39	1.92
18225421--18225646	124	1.8	124	89	0	353	29	16	21	32	1.95
18228738--18228764	11	2.5	11	100	0	54	77	0	0	22	0.76
18228821--18228863	12	3.8	12	80	20	56	41	0	30	27	1.56
18229823--18229862	21	2.0	21	85	5	55	25	2	7	65	1.32
18230041--18230085	23	2.0	22	86	4	63	62	2	2	33	1.20
18237573--18237627	24	2.3	24	80	0	65	23	16	23	36	1.94
18237877--18237936	27	2.2	27	100	0	120	40	6	18	35	1.77
18238696--18238889	51	3.9	49	80	4	210	25	18	27	28	1.98
18238702--18238889	102	1.9	100	90	3	270	25	18	27	28	1.98
18240227--18240257	16	1.9	16	100	0	62	32	19	22	25	1.97
18242290--18242335	24	1.9	24	86	0	65	17	10	26	45	1.81
18249338--18249420	37	2.3	35	79	6	94	73	2	9	14	1.18
18251088--18251183	3	33.0	3	67	10	56	61	5	4	29	1.36
18256286--18256322	17	2.2	17	100	0	74	37	27	18	16	1.92
18258129--18258443	157	2.0	158	98	1	607	43	14	11	31	1.80
18263653--18263978	50	6.6	49	75	7	268	30	22	24	22	1.99
18263653--18263987	149	2.2	149	96	0	625	30	22	24	22	1.99
18271165--18271442	50	5.6	50	80	2	263	29	22	27	20	1.98
18271226--18271442	99	2.2	99	81	5	242	30	21	27	20	1.98
18271170--18271504	149	2.2	149	91	1	537	30	22	26	21	1.99
18274961--18274990	8	3.8	8	90	0	51	23	23	13	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18296204--18296253	13	3.8	12	80	17	55	76	0	20	4	0.95
18298331--18298428	44	2.2	44	80	7	110	29	17	21	31	1.96
18298457--18298692	44	5.1	44	69	15	136	33	19	19	27	1.96
18298322--18298750	142	3.0	142	93	0	732	33	17	20	28	1.96
18307397--18307484	44	2.0	44	88	0	131	30	22	22	23	1.99
18307243--18307541	142	2.1	142	94	0	517	33	19	22	25	1.97
18307398--18307533	44	3.1	44	80	6	116	32	17	22	27	1.97
18307618--18308394	50	15.6	50	71	5	505	32	23	19	24	1.97
18307602--18308394	100	7.9	100	85	1	1009	32	23	20	24	1.98
18309223--18309581	50	7.2	50	73	3	301	32	23	20	24	1.98
18309215--18309601	100	3.9	100	89	1	553	32	22	20	24	1.98
18327932--18328038	50	2.1	50	82	0	133	28	22	29	19	1.98
18333475--18333787	109	2.9	106	90	3	475	35	18	16	29	1.94
18334113--18334181	35	1.9	37	82	11	90	52	2	10	34	1.50
18336966--18337137	86	2.0	86	93	0	290	36	8	16	38	1.79
18344890--18344938	20	2.5	19	77	6	53	26	4	24	44	1.71
18344877--18344944	19	3.5	19	74	7	66	27	4	22	45	1.71
18345388--18345420	14	2.4	14	94	0	57	63	0	3	33	1.10
18345438--18345494	17	3.4	16	80	9	69	54	1	5	38	1.33
18350590--18350754	51	3.2	51	97	2	305	46	7	3	41	1.50
18369559--18369609	25	2.0	26	84	3	68	37	9	11	41	1.75
18370243--18370282	19	2.1	19	86	9	55	32	2	5	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18371830--18371927	33	3.0	33	81	3	108	46	14	21	17	1.83
18373969--18373997	15	1.9	15	100	0	58	27	27	13	31	1.94
18375737--18375835	17	5.8	17	68	17	53	36	3	5	55	1.37
18375805--18375922	62	2.0	61	85	8	161	39	3	5	51	1.41
18385220--18385256	3	12.3	3	100	0	74	67	0	0	32	0.91
18391829--18391894	30	2.2	30	81	8	71	60	4	7	27	1.43
18394647--18394675	1	29.0	1	100	0	58	0	100	0	0	0.00
18397344--18397396	7	7.4	7	93	2	88	26	0	43	30	1.55
18398312--18398336	13	1.9	13	100	0	50	40	24	12	24	1.88
18399775--18399815	21	2.0	21	90	0	64	34	19	41	4	1.73
18400256--18400459	42	4.9	42	79	5	193	21	18	24	36	1.95
18400293--18400447	85	1.8	85	86	2	224	21	20	25	32	1.98
18400948--18400995	23	2.1	23	92	0	78	27	8	18	45	1.78
18401635--18401701	32	2.1	31	94	2	116	25	17	8	47	1.77
18411556--18411582	14	1.9	14	100	0	54	33	0	22	44	1.53
18413168--18413266	41	2.4	41	93	0	171	32	22	19	26	1.97
18420099--18420127	14	2.1	14	100	0	58	13	20	13	51	1.75
18430083--18430171	43	2.0	44	97	2	171	31	17	8	41	1.81
18433540--18433700	44	3.6	44	77	9	193	29	23	15	31	1.95
18433510--18433700	88	2.1	90	91	4	316	27	24	15	31	1.96
18436274--18436298	13	1.9	13	100	0	50	56	8	24	12	1.62
18436667--18436706	13	3.0	13	89	10	55	15	17	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18436667--18436707	21	2.0	20	90	4	64	14	17	0	68	1.22
18436667--18436707	6	6.0	7	78	16	50	14	17	0	68	1.22
18437625--18437665	20	2.0	20	90	0	64	68	7	12	12	1.39
18445208--18445256	24	2.0	24	100	0	98	59	12	8	20	1.58
18448558--18449267	155	4.9	151	77	13	611	41	4	9	44	1.57
18448802--18449200	138	2.9	132	82	9	462	41	4	8	45	1.53
18451337--18451373	18	2.0	19	89	5	58	48	13	0	37	1.43
18468370--18468429	30	2.0	31	83	9	79	20	40	1	38	1.62
18470784--18470836	3	17.7	3	96	0	97	33	35	0	30	1.58
18476237--18476274	20	1.9	20	100	0	76	36	7	36	18	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85