genome.fa.s5.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  76  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26295322--26295565	54	4.5	55	77	10	148	24	20	19	36	1.95
26295446--26295673	81	2.8	82	78	7	257	22	17	20	39	1.92
26295429--26295672	27	9.0	27	79	6	228	22	18	18	39	1.92
26302332--26302389	20	2.9	20	70	10	55	44	22	25	6	1.77
26307304--26307334	16	1.9	16	93	0	53	29	12	0	58	1.35
26320288--26320515	50	4.6	49	75	4	165	22	25	21	29	1.99
26326446--26326506	25	2.4	25	91	0	95	24	24	22	27	2.00
26328174--26328292	44	2.7	44	82	3	141	40	21	14	23	1.90
26333917--26334038	60	2.1	59	85	4	165	18	24	15	40	1.90
26333917--26334031	30	3.9	29	80	7	133	19	26	15	39	1.91
26333916--26334180	89	3.0	90	80	5	234	23	24	12	39	1.90
26333955--26334214	119	2.2	119	86	0	358	25	23	11	40	1.88
26333930--26334218	30	9.7	30	73	6	160	24	23	12	39	1.89
26344672--26344793	61	2.0	61	98	0	235	40	9	22	27	1.86
26349046--26349195	41	3.6	41	87	4	203	26	28	17	28	1.97
26351862--26352101	50	4.7	50	84	5	266	27	20	28	23	1.99
26351862--26352104	100	2.4	103	83	5	305	27	20	28	23	1.99
26352352--26352390	12	3.2	12	85	0	51	51	5	23	20	1.67
26356982--26357025	21	2.0	21	82	4	52	72	4	20	2	1.13
26358250--26358559	88	3.5	88	87	1	442	28	28	23	20	1.98
26358385--26358532	44	3.4	43	69	8	127	25	28	23	22	1.99
26358567--26359030	44	10.7	44	71	14	231	27	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26358557--26359030	217	2.2	217	91	1	770	27	21	22	28	1.99
26359123--26359221	44	2.2	44	77	10	103	30	19	18	32	1.95
26374639--26374663	7	3.6	7	100	0	50	64	12	0	24	1.27
26380635--26380665	14	2.2	14	94	0	53	45	0	12	41	1.42
26380982--26381031	24	2.1	24	100	0	100	52	0	36	12	1.39
26382276--26382305	15	1.9	16	93	6	53	66	16	6	10	1.41
26382331--26382390	27	2.2	26	83	13	77	30	21	30	18	1.97
26382340--26382396	27	2.1	27	93	6	98	31	24	26	17	1.97
26383312--26383371	27	2.2	27	94	5	104	15	31	21	31	1.94
26383397--26383428	16	1.9	17	93	6	57	6	6	18	68	1.32
26383434--26383496	28	2.4	26	89	7	92	50	1	9	38	1.44
26394401--26394508	44	2.5	44	81	3	119	33	17	18	30	1.94
26394526--26394716	100	1.9	100	90	0	301	24	23	23	29	1.99
26394541--26394702	50	3.2	50	64	3	128	24	24	22	29	1.99
26420719--26420750	14	2.1	16	88	11	50	40	0	3	56	1.15
26420730--26420864	42	3.1	42	62	17	105	37	4	9	48	1.56
26420806--26420837	14	2.1	16	88	11	50	40	0	3	56	1.15
26420700--26420876	87	2.0	88	98	1	347	38	3	9	48	1.51
26424071--26424186	32	3.6	32	90	0	169	42	10	8	38	1.70
26428355--26428536	83	2.2	84	95	3	339	24	10	10	53	1.68
26429130--26429185	26	2.2	24	93	6	94	41	5	1	51	1.35
26429428--26429468	14	2.6	16	81	18	50	56	0	4	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26430529--26430559	16	2.0	15	93	6	53	35	6	6	51	1.53
26439523--26439604	36	2.3	36	97	0	155	34	34	17	14	1.90
26448434--26448501	27	2.5	27	82	0	91	41	26	13	19	1.88
26451349--26451680	162	2.0	161	92	1	556	41	19	8	30	1.81
26453671--26453743	36	2.0	36	89	0	110	35	13	4	46	1.63
26460453--26460697	41	6.0	41	87	0	328	35	15	28	20	1.94
26460532--26460598	20	3.3	20	67	19	57	38	17	28	14	1.90
26460447--26460695	123	2.0	123	90	1	392	35	16	28	20	1.94
26463222--26463261	20	2.0	20	85	5	53	30	10	15	45	1.78
26470267--26470318	24	2.2	24	96	0	95	25	21	15	38	1.92
26472008--26472054	25	2.0	25	83	8	62	21	19	14	44	1.86
26475224--26475253	16	1.9	16	93	6	53	50	20	0	30	1.49
26483974--26484011	15	2.6	15	83	4	51	15	5	7	71	1.28
26487256--26487355	42	2.4	42	91	0	155	35	11	29	25	1.90
26492091--26492131	20	2.0	20	90	0	64	4	7	36	51	1.51
26500552--26500665	47	2.4	48	79	1	149	44	25	12	17	1.83
26502243--26502276	8	4.2	8	96	0	59	38	32	0	29	1.58
26512978--26513364	27	14.4	27	86	2	503	40	21	19	18	1.91
26516498--26516549	25	2.1	25	81	0	59	32	21	21	25	1.98
26518784--26518897	41	2.8	41	85	6	149	30	21	25	22	1.99
26520008--26520035	14	2.0	14	100	0	56	35	0	28	35	1.58
26523612--26523804	50	3.7	50	80	4	197	23	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26523612--26523798	100	1.8	104	80	6	229	23	28	19	28	1.98
26525128--26525164	20	1.9	18	89	10	56	54	5	2	37	1.38
26525390--26525414	10	2.5	10	100	0	50	60	8	24	8	1.52
26533113--26533229	50	2.4	50	81	4	130	27	23	16	32	1.96
26533206--26533334	50	2.5	51	81	13	138	21	27	22	27	1.99
26533204--26533341	56	2.6	50	80	6	150	22	26	23	27	1.99
26533684--26533740	30	1.9	30	85	0	78	35	22	5	36	1.77
26536925--26537128	102	2.0	102	99	0	399	38	16	13	31	1.87
26540939--26541694	378	2.0	378	100	0	1512	29	19	17	33	1.95
26545125--26545159	18	1.9	18	100	0	70	37	28	5	28	1.80
26554200--26554350	33	4.5	33	80	1	140	17	8	35	39	1.80
26562176--26562389	27	7.9	27	78	8	193	44	19	15	20	1.86
26562190--26562391	81	2.5	81	77	9	214	44	18	16	20	1.87
26562536--26562632	26	3.7	26	83	2	106	16	22	22	38	1.93
26562562--26562637	26	2.9	26	88	0	107	15	23	22	38	1.93
26563282--26563324	20	2.2	20	91	0	68	46	13	16	23	1.83
26572626--26572651	12	2.2	12	100	0	52	69	7	7	15	1.35
26574128--26574205	24	3.2	24	71	7	86	29	8	24	37	1.86
26595305--26595410	50	2.1	50	80	0	122	24	22	31	21	1.98
26597080--26597193	20	5.7	20	76	4	86	35	24	23	15	1.94
26608081--26608131	20	2.5	20	90	0	75	39	23	9	27	1.86
26610173--26610257	36	2.4	36	84	9	104	35	2	5	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26610189--26610268	36	2.2	36	82	8	92	36	1	8	53	1.40
26615269--26615323	20	2.8	20	80	0	56	12	34	18	34	1.89
26623579--26623677	39	2.5	39	91	0	153	43	22	6	28	1.77
26623930--26623987	28	2.1	27	93	6	100	27	29	15	27	1.96
26624591--26624856	131	2.0	132	94	0	462	40	14	12	33	1.83
26627147--26627177	12	2.6	12	94	0	53	25	29	25	19	1.99
26633442--26633569	61	2.1	61	84	4	168	42	2	10	43	1.52
26635724--26635757	17	2.0	17	88	11	52	35	0	5	58	1.22
26638864--26638889	13	2.0	13	100	0	52	53	7	0	38	1.30
26639207--26639300	43	2.2	43	96	0	170	22	29	30	17	1.96
26644375--26644651	30	9.2	30	76	8	210	38	12	24	23	1.91
26644465--26644535	29	2.4	30	85	2	90	43	9	28	18	1.81
26644398--26644625	119	1.9	120	89	2	352	38	12	25	23	1.90
26647664--26647878	29	7.4	29	77	9	143	36	10	27	25	1.88
26647651--26647878	58	3.9	59	74	10	182	36	11	27	25	1.90
26647655--26647893	87	2.7	86	80	5	248	36	12	26	24	1.91
26647686--26647892	29	7.1	29	79	4	175	36	12	26	24	1.91
26651378--26651402	9	2.8	9	100	0	50	68	0	24	8	1.16
26653403--26653461	26	2.3	26	90	0	91	37	11	13	37	1.82
26675354--26675425	29	2.4	29	84	6	92	40	11	30	18	1.85
26675387--26675513	67	1.9	67	88	3	193	39	11	25	23	1.89
26681923--26682057	40	3.4	40	81	0	171	27	18	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26682450--26682536	31	2.8	33	81	10	110	27	14	16	41	1.87
26682463--26682536	31	2.4	31	90	0	112	24	14	18	41	1.89
26686424--26686907	242	2.0	243	98	0	934	32	7	15	45	1.73
26694830--26694862	16	2.1	16	100	0	66	18	0	51	30	1.46
26695193--26695235	19	2.2	20	84	12	54	37	0	16	46	1.47
26700388--26700425	19	2.0	19	85	10	51	42	0	15	42	1.47
26700561--26700617	20	2.6	22	75	13	64	43	0	0	56	0.99
26700574--26700614	20	2.0	22	90	9	68	46	0	0	53	1.00
26700565--26700621	30	2.0	28	89	6	87	45	0	0	54	0.99
26701757--26701794	13	2.8	13	85	14	51	60	2	7	28	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85