genome.fa.s5.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  65  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22798849--22798948	50	2.0	50	90	0	155	30	15	26	29	1.95
22804135--22804210	26	2.9	26	90	0	116	23	22	23	30	1.99
22804135--22804392	29	9.2	29	76	4	174	28	18	19	33	1.96
22804189--22804392	57	3.6	57	83	0	219	29	18	18	33	1.95
22804161--22804343	86	2.2	84	82	4	208	27	17	20	33	1.95
22804189--22804392	86	2.4	87	78	4	216	29	18	18	33	1.95
22806294--22806323	7	4.3	7	95	0	51	16	13	26	43	1.85
22806341--22806396	20	2.8	20	83	8	69	12	8	41	37	1.74
22810661--22810727	21	3.2	21	87	8	100	28	5	35	29	1.81
22811048--22811073	5	5.2	5	100	0	52	19	0	0	80	0.71
22816760--22816833	33	2.2	33	92	0	121	35	13	18	32	1.90
22817702--22817769	30	2.3	29	83	11	86	19	17	0	63	1.32
22817732--22817766	18	1.9	18	88	11	54	22	20	0	57	1.41
22817780--22817834	21	2.7	21	82	2	58	5	20	0	74	1.01
22817798--22817841	21	2.1	21	83	8	54	9	22	0	68	1.18
22836697--22836742	24	1.9	24	82	8	58	28	2	10	58	1.43
22837395--22837484	45	2.0	45	97	0	171	28	17	21	32	1.96
22843754--22843787	17	1.9	18	88	5	52	32	11	0	55	1.36
22851627--22851688	31	2.0	31	96	0	115	41	14	11	32	1.81
22858501--22858593	31	3.0	31	93	0	159	38	16	11	33	1.85
22866614--22866639	1	26.0	1	100	0	52	0	0	0	100	0.00
22870159--22870295	55	2.5	55	85	0	193	25	9	15	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22870222--22870454	94	2.5	95	88	4	337	24	9	16	50	1.74
22870345--22870412	34	2.0	35	91	2	111	22	11	20	45	1.83
22870851--22870888	17	2.2	17	90	0	58	42	0	5	52	1.24
22870857--22870890	17	2.0	17	100	0	68	35	0	5	58	1.22
22872011--22872041	6	5.0	6	96	4	53	35	0	0	64	0.94
22873802--22873849	3	15.7	3	78	4	51	37	6	0	56	1.25
22873973--22874019	24	2.0	24	95	0	85	65	6	8	19	1.41
22874465--22874518	22	2.4	24	90	9	87	40	3	9	46	1.54
22883163--22883255	40	2.4	39	82	7	109	32	19	3	45	1.66
22883207--22883259	25	2.1	26	82	10	65	32	22	1	43	1.64
22883167--22883263	13	7.5	13	73	14	58	31	19	3	45	1.66
22883163--22883273	40	2.8	40	78	13	106	31	19	2	45	1.64
22885515--22885583	24	2.9	24	84	0	84	30	27	17	24	1.97
22885570--22885661	39	2.4	39	83	0	103	32	26	17	23	1.97
22887091--22887116	9	2.9	9	100	0	52	46	30	0	23	1.53
22887490--22887532	16	2.9	15	80	19	54	41	20	0	37	1.53
22889568--22889752	50	3.7	49	81	7	171	27	22	28	22	1.99
22894811--22894995	50	3.6	50	77	4	163	30	19	26	23	1.98
22894875--22895057	50	3.7	49	77	3	145	29	21	26	22	1.99
22899173--22899245	38	1.9	38	86	5	103	36	12	19	31	1.88
22901843--22901887	21	2.0	21	83	12	54	33	28	6	31	1.83
22911247--22911305	27	2.3	25	82	5	64	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22911284--22911335	24	2.2	24	82	0	59	38	0	0	61	0.96
22911290--22911336	24	2.0	24	86	0	67	36	0	0	63	0.94
22912559--22912599	20	2.0	20	86	9	57	73	0	0	26	0.84
22914371--22914423	19	2.7	19	75	18	56	54	3	0	41	1.18
22916462--22916499	17	2.1	19	90	9	62	31	18	10	39	1.85
22918127--22918221	44	2.1	44	83	9	113	33	4	27	34	1.76
22918646--22918731	31	2.7	31	80	5	75	45	1	4	48	1.30
22920893--22921031	40	3.5	39	78	7	129	31	27	23	17	1.97
22932192--22932286	47	2.0	47	100	0	190	38	18	23	18	1.93
22942738--22942819	40	2.0	40	100	0	164	35	15	7	41	1.75
22943157--22943314	51	3.1	51	96	0	280	30	23	13	32	1.94
22946703--22946788	22	3.8	22	83	11	102	38	18	24	18	1.93
22946703--22946847	25	6.3	25	77	14	109	37	17	25	18	1.93
22946782--22946819	19	2.0	19	94	0	67	34	15	31	18	1.92
22947911--22948068	51	3.1	51	94	0	280	30	22	14	32	1.94
22951588--22951657	38	1.9	34	83	11	86	24	10	1	64	1.33
22953627--22953712	43	2.0	43	83	0	109	48	3	23	24	1.66
22960677--22960724	16	3.0	16	93	0	78	37	10	6	45	1.64
22963832--22964045	40	5.6	40	73	7	158	22	20	24	32	1.98
22963796--22963958	36	4.4	36	76	8	148	22	20	25	31	1.98
22964138--22964184	24	2.0	24	91	0	76	55	2	19	23	1.54
22965282--22965314	11	3.0	11	100	0	66	36	0	27	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22973954--22973992	17	2.3	17	86	0	51	28	10	15	46	1.78
22976836--22976897	17	3.7	16	79	12	54	32	27	14	25	1.95
22978366--22978887	265	2.0	266	88	2	773	32	13	17	36	1.88
22980011--22980045	17	2.1	17	88	0	52	62	0	25	11	1.28
22985645--22985700	20	2.8	19	76	15	60	25	3	33	37	1.73
22985645--22985708	20	3.2	19	75	16	58	25	6	32	35	1.81
22988030--22988155	42	3.0	42	79	15	145	23	15	28	31	1.96
22988030--22988150	41	2.9	41	78	14	140	23	16	28	31	1.96
22988030--22988196	83	2.0	83	81	2	192	26	14	26	31	1.95
22988375--22988402	13	2.2	13	100	0	56	25	0	21	53	1.46
22989604--22989648	23	2.0	23	82	8	56	13	17	15	53	1.73
22994899--22995201	151	2.0	151	86	1	419	27	17	29	26	1.97
23000548--23000592	23	2.0	22	82	4	54	40	4	17	37	1.70
23000796--23000840	23	2.0	23	86	0	63	24	0	13	62	1.31
23001302--23001345	23	2.0	22	90	4	70	34	6	4	54	1.47
23005483--23005510	11	2.5	11	100	0	56	85	14	0	0	0.59
23005507--23005545	20	2.0	20	94	0	69	74	5	0	20	1.01
23006914--23007296	44	8.7	44	92	1	556	27	17	25	29	1.97
23007307--23007605	44	6.8	44	70	13	141	30	19	23	26	1.98
23007309--23007605	88	3.4	87	71	11	282	30	19	23	26	1.98
23007223--23007605	176	2.2	176	88	4	567	29	18	24	27	1.98
23009134--23009168	3	11.7	3	93	0	61	31	2	0	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23010473--23010540	35	1.9	35	84	0	91	61	0	2	35	1.11
23015455--23015480	6	4.3	6	100	0	52	34	15	34	15	1.89
23019810--23019854	23	2.0	23	95	0	81	44	0	0	55	0.99
23028488--23028526	21	1.9	20	84	5	51	38	25	17	17	1.92
23028698--23028823	35	3.6	35	76	7	130	41	17	16	24	1.90
23032801--23032948	43	3.4	43	86	0	197	34	24	14	26	1.94
23033092--23033219	61	2.1	63	88	2	188	42	17	9	29	1.81
23033092--23033230	32	4.5	31	88	2	172	44	17	8	28	1.79
23033397--23033454	29	2.0	29	82	3	71	29	24	3	43	1.70
23037412--23037550	69	2.0	70	98	1	271	34	10	24	30	1.88
23037655--23037692	9	4.2	9	93	0	67	47	13	10	28	1.76
23037697--23037755	29	2.0	29	96	0	109	37	8	0	54	1.31
23039084--23039131	5	9.4	5	84	8	53	20	25	14	39	1.91
23040118--23040164	3	15.7	3	100	0	94	68	31	0	0	0.90
23040944--23041001	22	2.7	21	76	10	53	43	17	5	34	1.71
23041544--23041669	44	2.8	44	80	5	130	29	23	17	29	1.97
23041770--23042978	45	26.9	45	84	3	1456	30	22	16	30	1.96
23044399--23044518	63	1.9	62	81	5	143	14	24	15	46	1.82
23045387--23045416	10	2.9	10	95	5	51	3	16	0	80	0.85
23049102--23049519	3	139.3	3	100	0	836	66	0	0	33	0.92
23049542--23049574	15	2.1	16	94	5	59	60	0	9	30	1.27
23049829--23049886	22	2.7	21	76	10	53	43	17	5	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23051995--23052118	27	4.7	27	79	3	126	39	13	22	24	1.90
23051995--23052108	54	2.1	53	85	1	147	42	13	22	21	1.88
23054309--23054359	25	2.0	25	85	7	68	21	3	15	58	1.53
23057929--23057959	15	2.1	15	93	0	53	22	9	32	35	1.87
23057933--23057975	21	2.0	21	95	0	77	20	9	34	34	1.85
23058239--23058281	16	2.6	16	85	3	50	18	2	4	74	1.10
23058279--23058312	15	2.3	15	90	10	52	8	0	14	76	1.01
23072371--23072437	29	2.6	25	80	19	91	29	2	0	67	1.06
23073162--23073209	24	1.9	25	83	8	62	60	4	0	35	1.16
23074951--23074996	23	2.0	23	100	0	92	34	30	0	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85