genome.fa.s5.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  35  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11687719--11687859	29	4.8	29	76	5	104	43	5	17	32	1.73
11691159--11691198	20	2.0	20	90	0	62	42	7	0	50	1.30
11698352--11698411	25	2.6	22	73	19	59	63	6	1	28	1.29
11698986--11699042	18	2.9	19	75	15	53	28	1	1	68	1.09
11699867--11699898	16	2.0	16	93	0	55	40	12	0	46	1.42
11699987--11700069	28	3.0	28	87	0	103	27	14	19	38	1.90
11704122--11704153	2	16.0	2	100	0	64	50	0	0	50	1.00
11704649--11704793	41	3.6	41	83	2	177	28	21	26	23	1.99
11708504--11708538	14	2.5	14	90	0	52	68	11	5	14	1.37
11710146--11710225	17	4.4	18	72	14	67	51	3	1	43	1.27
11712872--11713000	42	3.0	42	76	6	143	28	15	25	30	1.96
11714777--11714818	20	2.1	21	86	8	61	33	4	4	57	1.41
11720261--11720327	26	2.6	25	80	19	84	43	1	2	52	1.25
11720263--11720330	29	2.5	28	83	9	86	45	1	2	50	1.26
11720263--11720319	29	2.1	29	90	9	93	45	1	3	49	1.29
11720333--11720383	19	2.6	19	84	12	68	39	0	5	54	1.24
11736395--11736538	48	3.0	47	87	2	207	43	18	3	35	1.67
11738012--11738049	14	2.8	13	92	8	58	34	18	7	39	1.80
11738135--11738185	24	2.1	24	100	0	102	11	13	11	62	1.54
11741624--11741657	14	2.4	14	85	0	50	67	0	2	29	1.05
11742661--11742704	6	7.3	6	100	0	88	50	15	0	34	1.45
11747757--11747794	20	1.9	20	88	0	58	28	13	28	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11752306--11752356	6	8.5	6	100	0	102	33	0	17	49	1.47
11755773--11755815	18	2.4	18	80	7	52	41	6	0	51	1.29
11758462--11759792	228	5.8	228	86	2	1395	29	23	24	22	1.99
11758525--11759795	684	1.9	684	82	2	1618	29	22	24	22	1.99
11765596--11765687	26	3.5	26	81	0	103	33	35	15	15	1.89
11768776--11768800	7	3.6	7	100	0	50	28	0	12	60	1.32
11769959--11770096	25	5.7	25	76	14	146	42	1	13	43	1.52
11769916--11770096	95	1.9	93	94	2	317	40	1	12	45	1.50
11770124--11770248	29	4.3	29	89	3	171	48	25	0	25	1.57
11779077--11779412	126	2.7	125	91	1	550	32	23	15	29	1.95
11779655--11779826	90	1.9	89	85	3	238	30	23	21	23	1.99
11780861--11781747	228	3.9	228	87	1	1170	30	25	21	22	1.99
11780861--11781987	456	2.5	455	83	3	1293	29	24	23	23	1.99
11780861--11781987	228	4.9	227	83	3	1113	29	24	23	23	1.99
11783818--11783849	9	3.7	9	95	4	57	12	21	21	43	1.86
11785164--11785222	30	2.0	30	96	0	109	55	15	3	25	1.55
11787726--11787776	3	17.0	3	83	0	66	33	1	5	58	1.33
11787810--11787843	16	2.1	16	88	0	50	35	2	2	58	1.28
11792478--11792514	9	4.1	9	86	13	58	45	10	10	32	1.74
11792727--11792784	30	1.9	30	86	6	82	18	36	0	44	1.50
11794442--11794478	19	1.9	19	89	10	58	27	37	2	32	1.71
11795721--11795772	24	2.2	24	85	0	68	50	7	3	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11800432--11800480	13	3.7	14	72	22	52	40	0	2	57	1.10
11801262--11801334	36	2.0	35	83	8	83	45	1	23	30	1.61
11801279--11801351	36	2.0	37	84	7	96	45	1	24	28	1.62
11802046--11802080	2	17.5	2	87	0	52	48	0	2	48	1.16
11802049--11802087	12	3.2	12	88	3	51	48	2	5	43	1.38
11802666--11802731	13	5.1	13	88	0	78	28	9	21	40	1.83
11802666--11802731	26	2.5	26	82	0	87	28	9	21	40	1.83
11803480--11803523	22	2.0	21	91	4	70	40	4	13	40	1.65
11805120--11805376	27	9.5	27	98	0	469	15	24	37	22	1.93
11805428--11805507	19	4.6	19	70	20	68	52	12	1	33	1.47
11805424--11805515	27	3.6	26	80	16	120	53	11	1	33	1.45
11807433--11807474	16	2.7	15	85	7	57	38	2	2	57	1.25
11809111--11809155	22	2.1	21	91	4	72	0	33	2	64	1.06
11809113--11809164	22	2.8	18	75	25	54	0	36	1	61	1.07
11809221--11809313	27	3.5	26	89	4	141	21	36	20	21	1.95
11809455--11809516	30	2.2	29	77	16	67	24	11	9	54	1.65
11811524--11811581	21	2.7	22	82	15	61	68	1	5	24	1.19
11812286--11812398	55	2.1	55	100	0	226	48	17	17	15	1.81
11813414--11813441	8	3.5	8	100	0	56	50	0	39	10	1.37
11818996--11819029	17	1.9	18	88	5	52	11	8	8	70	1.34
11825856--11825895	16	2.5	17	84	12	57	15	2	10	72	1.21
11832083--11832125	18	2.3	19	80	8	52	72	0	18	9	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11832503--11832542	21	1.9	21	89	0	62	40	0	27	32	1.57
11846062--11846299	118	2.0	118	99	0	467	19	17	14	48	1.81
11851383--11851433	20	2.6	19	90	6	75	37	5	3	52	1.44
11851463--11851566	3	35.3	3	72	14	74	33	0	5	59	1.28
11851463--11851566	15	6.6	16	71	14	83	33	0	5	59	1.28
11851663--11851767	47	2.3	47	80	9	128	40	13	1	44	1.54
11851828--11851853	2	13.0	2	100	0	52	50	0	0	50	1.00
11853045--11853257	27	8.1	27	78	10	228	50	7	4	38	1.50
11853045--11853223	40	4.5	40	86	2	114	50	7	4	37	1.50
11853045--11853222	67	2.7	68	86	1	236	50	7	4	38	1.51
11854228--11854267	18	2.2	18	100	0	80	57	5	15	22	1.57
11854790--11854820	16	1.9	16	93	0	53	41	6	29	22	1.78
11858030--11858099	10	6.7	10	73	15	61	72	12	14	0	1.11
11865947--11866004	9	6.4	9	87	0	89	44	22	6	25	1.77
11865947--11866004	27	2.1	27	93	0	98	44	22	6	25	1.77
11875192--11875219	1	28.0	1	100	0	56	0	0	100	0	0.00
11880396--11880420	13	1.9	13	100	0	50	0	16	48	36	1.46
11880535--11880568	9	3.9	9	88	3	52	52	2	0	44	1.16
11881978--11882095	36	3.4	34	79	11	114	46	11	8	33	1.69
11881967--11882303	17	18.9	18	68	11	169	47	9	12	30	1.73
11882106--11882171	16	3.9	16	75	16	62	54	7	10	27	1.61
11882209--11882249	19	2.1	19	86	9	55	31	4	14	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11882466--11882507	19	2.2	19	87	12	59	33	14	11	40	1.82
11882635--11882667	5	6.6	5	100	0	66	63	0	0	36	0.95
11882827--11882883	10	5.8	10	78	8	55	1	21	0	77	0.86
11882834--11882882	21	2.4	21	76	10	57	2	22	0	75	0.90
11882904--11882958	24	2.3	23	82	14	76	3	30	43	21	1.70
11882904--11882968	25	2.6	25	87	4	96	3	30	44	21	1.67
11882999--11883057	3	17.7	3	86	13	64	0	35	0	64	0.94
11883005--11883057	25	2.3	22	87	9	70	0	33	0	66	0.92
11883007--11883057	16	3.0	16	85	8	66	0	35	0	64	0.94
11883418--11883497	29	2.8	28	92	5	133	42	6	21	30	1.77
11883496--11883527	15	2.1	16	94	5	57	15	0	6	78	0.95
11883513--11883541	12	2.4	12	100	0	58	13	0	6	79	0.93
11883886--11885114	73	16.7	73	95	2	2074	36	20	15	27	1.92
11885991--11886060	19	3.7	19	84	1	88	2	5	8	82	0.91
11885991--11886060	9	7.4	10	82	9	76	2	5	8	82	0.91
11890650--11890689	19	2.1	19	100	0	80	47	5	20	27	1.70
11900968--11901047	29	2.8	28	92	5	133	42	6	21	30	1.77
11901614--11901692	5	15.6	5	77	18	67	39	0	3	56	1.17
11901642--11901694	19	2.8	19	88	11	74	43	0	0	56	0.99
11901642--11901694	2	30.5	2	72	27	50	43	0	0	56	0.99
11904194--11904379	93	2.0	93	100	0	372	38	9	24	26	1.86
11904378--11904572	25	8.4	24	76	14	153	18	25	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11904477--11904515	19	2.1	19	85	9	53	23	30	17	28	1.97
11904405--11904572	91	1.9	88	86	3	237	18	26	18	36	1.94
11905527--11905554	13	2.2	13	100	0	56	21	7	25	46	1.76
11907210--11907485	136	2.0	137	97	2	520	41	4	16	38	1.68
11907941--11907996	3	18.7	3	85	14	80	37	0	0	62	0.95
11907935--11907997	21	3.3	18	81	14	81	41	0	0	58	0.98
11907941--11907996	21	2.6	21	97	2	103	37	0	0	62	0.95
11909046--11909129	21	3.9	22	84	7	111	15	22	25	36	1.93
11909045--11909129	44	2.0	41	86	6	116	16	22	24	36	1.94
11914377--11914633	108	2.4	109	89	3	376	30	15	18	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85