genome.fa.s5.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  46  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15350636--15350715	25	3.0	27	71	17	76	35	3	1	60	1.23
15356649--15356717	32	2.2	32	97	0	129	40	10	5	43	1.62
15356658--15356712	17	3.4	17	66	19	53	40	12	7	40	1.71
15363006--15363189	96	1.9	96	89	2	289	31	19	14	34	1.92
15364457--15364504	17	2.9	17	90	3	71	27	0	18	54	1.44
15365434--15365625	46	4.2	46	94	0	312	35	9	26	28	1.88
15370944--15371100	75	2.1	75	95	1	278	31	7	15	45	1.73
15372711--15372817	49	2.2	49	81	0	115	26	18	26	28	1.98
15385851--15386027	50	3.5	50	83	4	257	30	25	17	25	1.97
15385844--15386032	101	1.9	100	94	0	324	30	25	17	25	1.98
15390400--15390475	23	3.5	23	70	17	72	26	28	14	30	1.95
15390400--15390480	41	2.0	41	90	0	126	28	28	13	29	1.94
15390928--15390984	27	2.2	26	90	3	87	24	12	22	40	1.88
15392640--15392683	22	2.0	22	91	8	72	22	6	2	68	1.25
15393052--15393094	16	2.7	15	82	10	50	81	2	4	11	0.93
15395539--15395684	73	2.0	73	95	0	265	27	25	21	25	2.00
15400272--15400415	50	2.9	50	82	4	182	22	30	20	25	1.98
15407643--15407690	15	3.2	15	78	0	60	43	8	16	31	1.78
15409292--15409332	21	2.0	21	90	0	64	65	4	7	21	1.37
15415533--15415571	21	1.9	20	84	5	51	17	15	25	41	1.89
15422479--15422581	39	2.6	39	83	7	122	37	3	7	50	1.50
15430092--15430122	16	1.9	16	93	0	53	35	0	3	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15439141--15439171	16	1.9	16	93	0	53	35	0	3	61	1.12
15443268--15443316	12	3.9	13	84	15	52	69	2	16	12	1.28
15462017--15462110	47	2.0	47	91	0	152	31	15	18	34	1.92
15463628--15463876	49	5.0	49	85	5	336	51	14	9	24	1.71
15466786--15466837	21	2.5	21	100	0	104	3	28	3	63	1.30
15470049--15470387	49	7.0	49	81	6	386	48	13	10	27	1.74
15470049--15470387	100	3.5	98	83	6	431	48	13	10	27	1.74
15470181--15470351	92	1.9	92	91	0	279	47	12	11	28	1.76
15471029--15471088	23	2.5	23	79	15	68	26	1	15	56	1.48
15471544--15471576	15	2.3	15	89	5	50	27	15	6	51	1.66
15479373--15479552	50	3.5	50	80	7	182	22	28	21	27	1.99
15481332--15481381	20	2.5	20	86	0	73	40	14	30	16	1.87
15489257--15489371	60	1.9	60	87	0	167	29	31	13	25	1.94
15495416--15495468	19	2.7	20	77	11	56	41	0	3	54	1.18
15498127--15498152	13	2.0	13	100	0	52	38	0	7	53	1.30
15500669--15500779	59	1.9	56	85	5	150	50	3	2	43	1.33
15500770--15500824	25	2.2	25	81	12	60	47	7	1	43	1.41
15500761--15500867	37	2.9	39	75	19	104	52	4	2	40	1.37
15508188--15508370	50	3.7	50	84	3	228	22	32	18	27	1.97
15508188--15508370	97	1.9	99	88	7	284	22	32	18	27	1.97
15508783--15508875	42	2.2	42	86	0	123	20	25	13	39	1.90
15511653--15511701	20	2.7	18	77	22	57	51	4	0	44	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15511720--15512077	197	1.8	197	84	3	497	34	20	14	31	1.92
15513982--15514122	51	2.8	51	88	3	196	30	26	17	25	1.97
15513978--15514149	51	3.4	50	79	8	161	29	25	17	27	1.97
15517742--15517817	20	3.8	20	89	5	111	23	28	18	28	1.98
15517764--15517817	10	5.5	10	73	18	51	24	27	18	29	1.98
15526154--15526198	23	2.0	22	86	4	63	46	0	6	46	1.29
15526607--15526647	16	2.3	19	88	12	61	53	4	0	41	1.22
15528554--15528598	21	2.1	21	88	8	65	64	0	6	28	1.19
15528759--15528827	10	7.4	9	80	15	79	60	0	2	36	1.11
15528754--15528843	37	2.5	36	82	12	96	60	0	3	36	1.14
15528782--15528843	18	3.4	17	77	20	63	61	0	1	37	1.06
15535246--15535317	29	2.4	30	79	4	92	12	18	26	43	1.85
15539045--15539074	15	2.0	15	93	0	51	46	3	0	50	1.18
15545783--15545850	35	2.0	35	85	8	95	41	2	0	55	1.15
15547821--15547852	2	16.0	2	100	0	64	50	0	0	50	1.00
15547855--15547891	17	2.2	17	100	0	74	45	0	24	29	1.53
15547859--15547899	17	2.2	19	87	12	59	41	2	21	34	1.67
15550983--15551027	20	2.2	20	84	0	54	55	0	22	22	1.44
15556933--15556967	17	2.1	17	100	0	70	22	17	31	28	1.96
15564261--15564299	18	2.2	17	86	13	53	33	0	20	46	1.51
15564525--15564623	23	4.3	23	82	3	119	26	20	24	29	1.99
15564525--15564623	46	2.2	46	90	0	153	26	20	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15564827--15564874	23	2.0	25	84	8	64	37	0	25	37	1.56
15571447--15571485	20	1.9	21	84	5	53	41	0	10	48	1.37
15571606--15571644	18	2.2	17	86	13	53	33	0	20	46	1.51
15571855--15572074	23	9.4	23	76	13	171	20	18	28	33	1.96
15571854--15572074	46	4.7	46	76	8	230	20	18	28	33	1.96
15571900--15572074	96	1.8	96	86	0	251	19	17	28	34	1.95
15602072--15602135	25	2.5	27	82	10	80	42	25	20	12	1.87
15603471--15603711	49	4.8	48	79	6	180	23	27	20	27	1.99
15609246--15609300	26	2.1	26	93	0	92	14	9	32	43	1.77
15610063--15610092	15	2.0	15	93	0	51	33	36	6	23	1.81
15610942--15610993	15	3.5	15	79	10	61	30	7	0	61	1.24
15611159--15611195	9	4.1	9	92	0	65	45	13	10	29	1.77
15611408--15611464	30	1.9	29	82	3	69	19	33	0	47	1.50
15611949--15611974	5	5.2	5	100	0	52	19	19	19	42	1.90
15615959--15616006	24	2.0	24	100	0	96	16	25	25	33	1.96
15616741--15616797	28	2.0	28	93	0	96	22	12	17	47	1.81
15617648--15617728	36	2.3	36	93	2	137	39	4	3	51	1.41
15619674--15619742	35	1.9	36	97	2	131	26	2	18	52	1.60
15622288--15622331	23	2.0	23	86	4	63	50	2	2	45	1.27
15624065--15624130	32	2.1	32	100	0	132	25	3	21	50	1.63
15625930--15625995	18	3.7	18	71	4	62	42	4	1	51	1.31
15626711--15626737	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15629857--15629907	27	1.9	26	84	11	68	23	9	11	54	1.66
15643043--15643527	44	10.8	44	70	17	252	33	18	20	28	1.96
15643131--15643199	36	1.9	36	82	11	88	28	20	18	31	1.96
15643044--15643293	124	2.0	123	92	0	419	31	18	20	29	1.96
15643210--15643436	98	2.3	98	94	0	391	34	18	19	26	1.96
15643210--15643474	98	2.7	97	90	3	381	33	19	19	27	1.96
15648002--15648048	17	2.9	16	84	9	60	8	14	0	76	1.01
15649281--15649314	17	2.1	17	88	5	52	29	11	11	47	1.76
15655327--15655566	50	4.7	50	82	3	246	23	27	21	27	1.99
15655327--15655569	100	2.4	102	82	4	274	23	27	21	27	1.99
15662466--15662706	50	4.7	50	84	3	266	23	27	21	26	1.99
15665033--15665071	19	2.0	20	90	9	64	20	30	2	46	1.64
15666994--15667052	20	3.0	20	84	0	82	40	22	30	6	1.79
15670726--15670763	17	2.4	17	91	8	62	31	13	0	55	1.38
15672127--15672163	17	2.3	16	90	9	58	27	16	0	56	1.40
15682487--15682528	18	2.3	19	91	4	68	19	26	0	54	1.44
15685245--15685313	23	3.0	23	74	14	70	42	23	13	21	1.88
15685424--15685905	119	4.1	119	91	0	730	26	25	17	30	1.97
15686660--15686713	25	2.0	29	82	13	71	31	25	14	27	1.95
15687427--15687466	21	1.9	21	85	10	55	57	7	0	35	1.27
15690249--15690381	50	2.7	50	84	2	151	19	27	24	28	1.98
15690286--15690428	50	2.7	50	81	6	151	21	29	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15693493--15693624	50	2.6	51	85	3	185	33	15	12	37	1.86
15695901--15695954	18	2.8	19	86	13	67	70	1	22	5	1.18
15695942--15695988	17	2.8	16	83	6	58	53	6	29	10	1.60
15695942--15695980	16	2.4	16	84	16	53	48	7	30	12	1.69
15700922--15700975	23	2.4	21	80	17	63	35	0	1	62	1.06
15700931--15700965	16	2.2	16	90	5	54	34	0	0	65	0.93
15701554--15701614	27	2.3	27	88	5	88	59	8	1	31	1.37
15702810--15702919	40	2.8	40	87	0	139	20	23	16	39	1.92
15704852--15704986	41	3.2	41	75	9	130	32	26	17	23	1.96
15709635--15709673	19	2.1	19	95	0	69	25	10	12	51	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85