genome.fa.s5.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  50  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17202313--17206062	132	28.4	131	89	1	5171	30	19	22	28	1.98
17202313--17205656	44	75.9	44	61	13	417	30	19	22	28	1.98
17206360--17206798	132	3.3	131	84	1	572	29	17	24	28	1.97
17206934--17207110	44	4.0	44	65	13	121	31	16	22	29	1.96
17206934--17207257	132	2.5	132	93	0	540	31	17	23	27	1.97
17228012--17228214	44	4.6	44	71	10	146	29	18	24	27	1.98
17227904--17228308	131	3.1	131	87	2	555	28	18	24	28	1.98
17228143--17228237	44	2.2	44	84	0	118	28	20	24	27	1.99
17227904--17228308	132	3.1	130	87	2	562	28	18	24	28	1.98
17229769--17229810	12	3.1	14	83	13	52	11	7	9	71	1.31
17244322--17244390	27	2.6	27	88	4	104	18	17	15	47	1.82
17245461--17245510	24	2.0	25	88	3	75	22	40	2	36	1.65
17246660--17246688	15	1.9	15	100	0	58	31	6	27	34	1.83
17254058--17254098	20	2.0	20	100	0	82	24	14	39	21	1.91
17265309--17265464	27	5.8	27	82	0	179	37	19	19	23	1.94
17274549--17274674	27	4.7	27	76	5	103	41	17	16	24	1.90
17288994--17289316	40	8.0	40	81	1	340	20	29	14	34	1.93
17290026--17290056	12	2.6	12	94	0	53	29	41	25	3	1.71
17294935--17295180	27	9.2	27	85	1	271	43	21	15	19	1.87
17295402--17295461	26	2.3	27	82	8	70	23	23	18	35	1.96
17295414--17295468	26	2.1	26	86	6	76	25	20	20	34	1.96
17297872--17297905	10	3.4	10	95	0	59	55	23	0	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17298142--17298199	20	2.9	20	89	0	71	31	27	13	27	1.94
17301789--17301822	17	2.0	17	94	0	59	32	17	23	26	1.97
17302615--17302683	10	6.9	10	73	12	61	26	31	14	27	1.95
17302616--17302691	20	3.8	20	86	5	102	25	31	15	27	1.96
17326505--17326811	38	8.1	38	84	1	310	16	18	28	36	1.92
17326508--17326804	114	2.6	114	83	2	364	16	19	28	36	1.93
17330520--17330663	27	5.4	27	80	5	141	36	18	20	24	1.94
17330683--17330728	24	1.9	24	90	0	74	26	10	23	39	1.88
17330709--17330766	24	2.4	24	88	0	89	22	8	22	46	1.79
17330830--17330893	27	2.4	27	85	14	89	18	23	25	32	1.97
17330941--17331033	32	2.9	32	80	0	114	21	18	20	39	1.92
17337380--17337420	18	2.2	20	86	8	59	41	12	2	43	1.55
17342150--17342244	46	2.1	46	95	0	172	40	22	2	35	1.66
17343806--17343837	16	2.0	16	93	0	55	34	18	9	37	1.83
17348432--17348605	27	6.4	27	84	0	213	20	15	22	41	1.90
17348435--17348618	81	2.3	81	83	3	237	21	15	21	41	1.89
17352496--17352551	21	2.7	21	88	0	76	17	23	37	21	1.94
17369114--17369153	11	3.6	11	86	0	53	77	12	0	10	0.99
17369118--17369149	16	1.9	17	93	6	57	78	15	0	6	0.95
17369829--17370811	44	21.9	44	72	8	462	27	21	18	31	1.97
17369736--17370449	225	3.2	222	72	8	589	28	20	19	31	1.97
17370294--17370815	178	2.9	178	87	0	758	27	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17373149--17373196	18	2.7	18	80	0	60	0	25	0	75	0.81
17373153--17373198	12	4.0	12	83	8	60	0	28	0	71	0.86
17376316--17376362	19	2.5	20	86	6	62	44	8	19	27	1.79
17380192--17380224	14	2.3	15	89	5	50	81	9	0	9	0.87
17393600--17393781	39	4.7	39	81	4	206	42	21	4	30	1.74
17393600--17393780	78	2.3	78	84	0	229	41	22	4	30	1.75
17416250--17416281	16	2.0	16	100	0	64	18	25	18	37	1.94
17418317--17418427	42	2.6	43	80	4	127	33	25	16	25	1.96
17423607--17423660	25	2.2	25	89	0	81	22	11	48	18	1.79
17424911--17424953	19	2.3	18	84	4	50	27	25	34	11	1.91
17425170--17425309	27	5.1	27	86	0	163	39	20	21	19	1.93
17425219--17425339	54	2.2	54	83	2	154	42	17	19	20	1.89
17425182--17425341	81	2.0	82	81	3	189	40	20	19	20	1.92
17429640--17429827	50	3.6	50	79	4	178	26	19	28	25	1.99
17431100--17431135	17	2.1	18	89	5	56	16	22	38	22	1.93
17431339--17431668	27	12.2	27	83	4	346	41	23	16	18	1.89
17431351--17431669	81	3.9	81	87	4	385	41	23	16	18	1.90
17432086--17432320	28	8.4	28	89	6	345	22	24	23	28	1.99
17433122--17433160	20	2.0	20	90	10	62	56	5	23	15	1.59
17433154--17433186	12	2.8	12	100	0	66	66	0	24	9	1.20
17433456--17433505	25	1.9	27	84	8	68	40	12	18	30	1.86
17435759--17435951	51	3.8	50	81	3	199	29	26	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17449637--17449791	27	5.8	27	86	0	204	43	23	15	17	1.87
17449660--17449818	54	3.0	53	85	2	201	42	20	16	20	1.89
17464135--17464165	9	3.4	9	90	0	53	38	22	12	25	1.90
17465411--17465468	4	14.5	4	75	0	53	20	24	3	51	1.62
17472925--17472985	23	2.7	23	70	14	54	70	1	21	6	1.19
17473538--17473568	14	2.3	13	94	5	53	77	22	0	0	0.77
17473559--17473591	17	1.9	17	93	0	57	81	12	6	0	0.85
17473999--17474379	42	9.1	42	82	2	424	20	17	23	39	1.92
17474386--17474416	16	1.9	16	100	0	62	19	19	9	51	1.74
17474705--17474738	10	3.3	10	88	8	50	5	11	0	82	0.83
17475098--17475143	19	2.3	20	85	10	60	36	2	13	47	1.54
17475135--17475523	153	2.5	150	83	8	482	42	3	9	44	1.55
17475170--17475581	153	2.7	156	84	6	479	41	4	9	43	1.57
17476164--17476208	16	2.8	17	76	10	58	22	6	2	68	1.24
17476149--17476206	21	2.8	20	84	7	62	20	6	3	68	1.27
17477598--17477677	39	2.1	39	100	0	160	17	5	12	65	1.44
17479935--17479978	23	1.9	23	95	0	79	31	6	9	52	1.59
17486585--17486849	132	2.0	132	100	0	530	33	21	15	28	1.95
17487326--17487439	43	2.7	43	80	13	135	29	28	20	21	1.98
17488844--17489018	85	2.1	85	97	0	332	39	14	18	26	1.90
17489798--17490040	51	4.8	50	79	8	258	29	26	14	29	1.95
17489807--17490044	102	2.3	102	91	1	397	29	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17490513--17490571	30	1.9	31	86	10	86	27	20	8	44	1.80
17492090--17492118	11	2.5	12	88	11	51	41	6	0	51	1.28
17494166--17494213	2	24.0	2	100	0	96	50	0	0	50	1.00
17495799--17495859	31	2.0	31	93	0	104	18	31	21	29	1.96
17498503--17498604	16	5.6	16	71	24	78	15	22	31	30	1.95
17498516--17498626	22	5.6	22	72	23	120	15	21	31	31	1.94
17498539--17498645	16	6.0	16	68	24	54	15	19	31	32	1.94
17498459--17498670	38	5.6	38	92	0	316	19	19	28	32	1.96
17500263--17500294	16	2.0	16	93	0	55	59	0	15	25	1.36
17503045--17503088	22	2.0	22	100	0	88	40	18	0	40	1.50
17503334--17503405	31	2.3	32	78	7	85	29	13	9	47	1.75
17505148--17505181	17	2.0	18	88	11	54	20	5	2	70	1.21
17510235--17510524	144	2.0	143	89	3	449	32	18	17	32	1.94
17528527--17528576	18	2.8	18	79	14	50	54	12	0	34	1.38
17529268--17529366	42	2.4	42	87	3	137	25	22	28	24	1.99
17546700--17546775	25	3.2	25	62	24	63	18	23	28	28	1.98
17546682--17546816	47	3.0	47	90	5	199	17	29	28	25	1.97
17547427--17547465	19	2.0	20	85	5	53	33	15	0	51	1.44
17555622--17555651	13	2.2	14	94	5	53	53	0	0	46	1.00
17559356--17559382	14	1.9	14	100	0	54	37	22	25	14	1.93
17559950--17559995	21	2.3	20	78	14	51	30	6	17	45	1.73
17561894--17562080	51	3.7	49	80	5	194	25	14	27	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17561895--17561977	26	3.2	26	68	21	75	25	15	26	32	1.96
17561941--17562072	50	2.6	51	85	1	167	25	13	26	34	1.93
17568335--17568522	50	3.6	50	75	4	142	28	20	26	25	1.99
17577416--17577465	21	2.3	22	86	13	68	28	6	14	52	1.65
17582649--17582682	17	2.1	17	94	5	61	5	20	38	35	1.77
17582845--17582879	18	1.9	18	88	11	54	22	37	0	40	1.55
17595243--17595273	15	2.1	15	93	0	53	22	6	32	38	1.80
17599271--17599295	9	2.8	9	100	0	50	56	12	32	0	1.36
17602431--17602525	42	2.3	42	94	0	163	12	31	30	25	1.93
17602938--17602978	21	1.9	22	90	5	66	31	21	9	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85