genome.fa.s5.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  84  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29556551--29556597	23	2.0	23	87	8	67	23	2	2	72	1.06
29556513--29556659	73	2.0	74	98	1	287	29	1	4	63	1.23
29559672--29559699	6	4.7	6	100	0	56	17	46	17	17	1.85
29562592--29562661	35	2.1	33	84	10	88	35	11	15	37	1.84
29563673--29563708	2	18.0	2	94	0	63	50	2	47	0	1.15
29565811--29565835	8	3.1	8	100	0	50	76	0	0	24	0.80
29565897--29565964	27	2.5	27	82	0	91	26	33	32	7	1.84
29567888--29567926	3	13.3	3	89	5	53	61	0	33	5	1.18
29567889--29567923	11	3.1	11	91	4	52	60	0	34	5	1.21
29567917--29567968	23	2.4	21	80	6	59	65	3	23	7	1.35
29568253--29568285	14	2.4	14	94	0	57	21	0	27	51	1.48
29568817--29568845	15	1.9	15	100	0	58	34	37	0	27	1.57
29578335--29578389	28	1.9	29	88	3	85	29	1	0	69	0.99
29578326--29578396	28	2.4	30	79	9	83	33	1	0	64	1.02
29580429--29580485	4	14.2	4	96	0	96	24	0	28	47	1.52
29584445--29584547	31	3.4	30	75	4	98	40	16	3	38	1.67
29584885--29584914	3	10.0	3	92	0	51	66	30	3	0	1.07
29588978--29589092	57	2.0	58	86	5	162	47	5	18	28	1.70
29590415--29590445	16	1.9	16	100	0	62	35	6	6	51	1.53
29594735--29594785	25	2.0	25	100	0	102	19	15	3	60	1.50
29597166--29597280	62	1.9	61	82	8	146	25	8	10	55	1.62
29597216--29597277	29	2.2	29	83	11	76	25	8	9	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29598594--29598628	19	1.9	17	88	11	52	20	8	11	60	1.57
29598594--29598634	18	2.2	19	83	12	50	21	9	9	58	1.59
29598829--29598863	19	1.9	17	88	11	52	20	8	11	60	1.57
29598829--29598869	18	2.2	19	83	12	50	21	9	9	58	1.59
29598467--29598937	235	2.0	236	99	0	935	23	13	13	50	1.76
29600211--29600243	18	1.9	17	88	11	50	45	0	3	51	1.16
29600755--29600795	19	2.0	21	86	9	59	21	9	31	36	1.86
29603141--29603201	20	2.9	22	83	7	65	70	6	9	13	1.33
29608198--29608659	231	2.0	231	100	0	924	29	22	22	26	1.99
29608870--29608899	7	4.3	7	91	0	51	13	0	36	50	1.42
29608692--29609741	97	10.8	97	95	1	1775	39	1	18	39	1.62
29609740--29610156	126	3.3	126	91	2	676	33	17	20	28	1.95
29611046--29611071	7	3.7	7	100	0	52	57	15	0	26	1.38
29619124--29619488	162	2.3	162	87	3	522	31	9	28	29	1.89
29619248--29619488	57	4.4	56	74	14	180	30	10	29	29	1.90
29619305--29619523	105	2.1	105	81	3	253	32	11	28	27	1.92
29619327--29619542	105	2.1	105	84	3	274	32	12	28	26	1.93
29625998--29626733	227	3.2	226	89	2	1080	34	15	16	33	1.90
29638558--29638601	23	2.0	22	86	13	63	45	2	2	50	1.27
29656389--29656589	93	2.2	93	80	3	217	27	18	26	27	1.98
29656508--29656739	75	3.1	75	89	1	313	30	20	27	21	1.98
29663380--29663411	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29665791--29665839	21	2.4	21	79	3	55	34	26	10	28	1.89
29667953--29668019	29	2.3	29	82	7	82	41	16	7	34	1.76
29676140--29676167	7	4.0	7	100	0	56	0	0	57	42	0.99
29678088--29678123	4	9.5	4	88	11	58	50	0	0	50	1.00
29678627--29678653	10	2.7	10	100	0	54	29	11	51	7	1.64
29680876--29680908	16	2.0	17	88	5	50	51	0	0	48	1.00
29688595--29688807	26	8.2	24	74	15	133	60	5	7	27	1.46
29688719--29688784	28	2.3	28	89	7	98	59	1	7	31	1.35
29692238--29692273	17	2.1	17	100	0	72	41	16	11	30	1.83
29694504--29694836	97	3.3	105	79	8	379	42	2	15	39	1.59
29695935--29696300	154	2.4	152	83	8	462	53	4	9	32	1.53
29697407--29697480	11	6.2	12	76	10	73	60	0	1	37	1.05
29697421--29697490	36	1.9	36	94	0	122	64	1	0	34	1.03
29697763--29697798	18	2.1	17	94	5	63	38	0	11	50	1.38
29698635--29698691	10	5.5	10	75	10	53	63	0	1	35	1.05
29698661--29698693	11	3.1	11	86	4	50	57	0	0	42	0.98
29698635--29698700	18	3.4	18	76	15	62	65	0	1	33	1.02
29713834--29713872	20	1.9	21	94	5	71	35	0	0	64	0.94
29713833--29713878	20	2.2	20	85	14	67	34	0	0	65	0.93
29714706--29714758	15	3.3	16	81	7	63	60	0	0	39	0.97
29714887--29714911	7	3.6	7	100	0	50	56	0	0	44	0.99
29716230--29716261	2	16.0	2	100	0	64	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29721628--29722398	44	17.8	45	68	14	309	27	23	19	29	1.98
29721848--29722396	89	6.3	90	68	14	292	27	24	19	28	1.99
29721510--29722398	216	4.1	216	91	1	1388	28	23	19	29	1.98
29734158--29734229	35	2.1	33	82	10	83	65	6	6	20	1.41
29734220--29734665	222	2.0	223	99	0	885	57	8	5	28	1.52
29736803--29736966	51	3.3	49	71	21	171	35	1	23	39	1.66
29736787--29736915	46	2.7	48	72	21	117	34	2	24	37	1.69
29736787--29736980	97	2.0	97	100	0	388	35	2	23	39	1.67
29739528--29739558	15	2.1	15	93	0	53	6	29	22	41	1.78
29739891--29739994	45	2.4	45	82	6	115	29	18	5	46	1.72
29743587--29743721	62	2.2	61	84	5	186	50	2	4	42	1.34
29751842--29751905	31	2.1	31	88	5	94	46	9	9	34	1.68
29752209--29752327	58	2.0	59	98	1	231	24	19	15	41	1.89
29757637--29757665	10	2.9	10	100	0	58	31	6	20	41	1.79
29758943--29759091	66	2.3	66	94	1	255	31	8	20	39	1.82
29766690--29766819	51	2.5	52	87	3	192	26	13	31	28	1.94
29773612--29773660	26	2.0	25	88	8	73	26	8	8	57	1.56
29774446--29774530	39	2.2	39	91	0	134	30	3	22	43	1.70
29781720--29781838	52	2.3	52	92	1	195	26	11	31	30	1.92
29792839--29792872	17	2.0	17	88	11	52	47	8	26	17	1.77
29793491--29793854	179	2.0	179	93	2	615	29	11	20	37	1.89
29796637--29796671	16	2.2	16	89	0	52	20	5	22	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29797584--29797703	45	2.7	45	79	5	109	26	14	20	38	1.91
29800192--29800246	24	2.2	25	83	3	67	21	27	20	30	1.98
29805182--29805296	17	6.9	17	71	13	78	34	29	18	17	1.94
29809030--29809058	2	14.5	2	100	0	58	48	0	0	51	1.00
29815764--29815837	21	3.5	21	71	14	71	36	12	6	44	1.68
29815741--29815836	42	2.3	42	96	1	174	34	10	6	48	1.62
29818230--29818255	11	2.4	11	100	0	52	69	7	0	23	1.14
29820138--29820219	41	2.0	41	100	0	164	36	7	21	34	1.82
29822062--29822189	62	2.1	62	96	0	238	46	11	14	26	1.79
29822753--29822804	16	3.2	16	86	0	68	32	19	3	44	1.69
29835259--29835288	15	2.0	15	100	0	60	26	6	13	53	1.64
29842113--29842193	42	1.9	42	82	9	103	27	20	24	27	1.99
29853069--29853125	2	32.5	2	74	25	58	56	0	0	43	0.99
29853069--29853125	7	8.1	8	76	23	58	56	0	0	43	0.99
29853069--29853125	8	6.3	9	83	16	66	56	0	0	43	0.99
29853089--29853154	24	2.7	25	79	9	64	57	4	0	37	1.19
29857611--29857677	27	2.5	26	78	7	71	17	31	16	34	1.93
29857449--29857703	121	2.1	120	86	3	352	21	28	17	32	1.96
29859217--29859629	31	13.3	31	83	1	477	25	14	10	49	1.75
29861744--29862002	27	9.5	27	80	8	199	28	23	13	34	1.93
29861790--29862016	28	8.2	28	77	10	168	28	22	12	36	1.91
29861870--29862016	56	2.6	56	82	2	188	28	20	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29872614--29872785	43	4.0	42	77	8	150	30	27	15	26	1.96
29875265--29875327	30	2.1	30	100	0	126	31	22	14	31	1.93
29877666--29877702	20	1.9	20	88	5	58	16	0	2	81	0.81
29880315--29880357	15	2.9	15	75	0	50	27	13	4	53	1.60
29895152--29895184	16	2.1	16	100	0	66	21	36	6	36	1.78
29895544--29895600	29	2.2	25	81	15	62	45	17	5	31	1.71
29895656--29895731	9	8.4	9	81	5	82	43	19	7	28	1.79
29895656--29895731	27	2.8	27	83	0	98	43	19	7	28	1.79
29895810--29895853	18	2.4	18	88	7	63	13	2	43	40	1.57
29907943--29908007	31	2.1	31	85	5	87	38	9	16	35	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85