genome.fa.s5.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  41  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13889932--13889983	27	1.9	27	96	0	95	21	19	19	40	1.92
13890134--13890164	15	2.1	15	93	0	53	19	25	6	48	1.72
13890455--13890731	50	5.4	50	82	4	277	21	28	22	27	1.99
13890455--13890731	150	1.8	154	82	4	364	21	28	22	27	1.99
13890443--13890681	100	2.4	100	85	1	309	22	30	20	26	1.98
13898831--13899080	50	4.9	50	86	3	302	22	30	20	26	1.98
13898799--13899070	100	2.7	100	80	3	274	24	28	19	27	1.99
13901715--13901761	20	2.3	20	85	7	60	27	29	17	25	1.97
13910486--13910523	12	3.2	12	100	0	76	52	15	7	23	1.69
13916907--13916982	23	3.3	23	90	0	125	23	21	25	30	1.99
13924160--13924202	21	2.0	21	95	0	77	34	16	18	30	1.93
13927980--13928064	20	4.2	20	69	11	66	24	22	18	34	1.96
13927992--13928084	40	2.3	40	84	0	114	20	21	22	35	1.96
13929843--13929901	25	2.5	22	78	13	64	52	0	0	47	1.00
13940039--13940064	13	2.0	13	100	0	52	38	30	0	30	1.58
13942045--13942303	29	8.9	29	76	2	178	22	28	13	35	1.92
13942055--13942303	58	4.3	58	74	3	205	23	28	12	35	1.91
13942045--13942318	87	3.1	86	77	6	257	22	28	14	35	1.93
13949403--13949482	40	2.0	40	90	0	124	23	32	13	30	1.93
13951610--13951657	25	1.9	25	82	0	60	39	8	4	47	1.53
13954640--13954759	24	5.0	24	78	7	127	23	20	26	29	1.99
13962437--13962620	50	3.5	51	81	5	183	26	20	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13962872--13962910	12	3.2	12	85	0	51	51	5	23	20	1.67
13965985--13966048	32	2.0	32	100	0	128	31	21	12	34	1.91
13968930--13969008	39	2.0	39	92	0	131	36	2	18	41	1.65
13971787--13971833	26	1.9	26	83	12	64	59	2	0	38	1.09
13971777--13971833	14	4.0	14	71	13	53	63	1	0	35	1.05
13973185--13973242	22	2.6	22	86	5	73	51	3	5	39	1.41
13979626--13979683	22	2.6	22	81	7	64	44	17	1	36	1.59
13979639--13979683	22	2.0	23	86	4	65	40	17	2	40	1.62
13985363--13985414	26	1.9	27	92	7	88	19	11	15	53	1.71
13991883--13991944	27	2.3	27	85	0	88	46	9	8	35	1.66
13992412--13992450	16	2.4	16	87	8	53	79	0	17	2	0.84
13992771--13992863	19	5.1	19	70	12	77	31	10	13	44	1.79
13992752--13992928	54	3.3	54	91	1	275	32	11	14	41	1.82
13994214--13994247	18	1.9	18	88	5	52	5	14	14	64	1.46
13998009--13998079	33	2.2	33	84	5	90	43	29	12	14	1.82
14002939--14003059	36	3.3	35	77	6	109	14	18	30	36	1.91
14009416--14009458	21	2.0	21	100	0	86	34	13	0	51	1.42
14012893--14012929	18	2.1	18	100	0	74	24	32	16	27	1.96
14016522--14016572	23	2.2	23	92	0	84	27	9	21	41	1.84
14041010--14041301	50	5.7	50	81	3	264	28	20	27	23	1.99
14058217--14058482	89	3.0	89	95	1	460	26	17	19	36	1.94
14058939--14058987	18	2.8	17	76	14	55	10	2	10	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14061786--14062003	50	4.4	50	94	0	373	25	22	32	20	1.98
14065253--14065309	27	2.1	27	96	0	105	19	33	10	36	1.86
14068414--14068546	50	2.7	50	93	0	230	26	21	30	21	1.98
14076664--14076906	50	4.8	50	76	6	168	24	25	20	28	1.99
14084152--14084280	56	2.4	53	84	7	156	23	30	20	26	1.98
14085317--14085351	17	1.9	18	88	11	54	25	11	5	57	1.56
14091023--14091085	33	1.9	33	100	0	126	34	12	23	28	1.92
14091395--14091437	20	2.1	21	83	12	54	6	34	0	58	1.25
14099349--14099383	16	2.2	16	94	0	61	31	0	31	37	1.58
14112954--14113088	56	2.6	50	86	9	164	23	31	21	22	1.98
14120280--14120319	20	2.0	20	90	9	64	15	22	7	55	1.65
14132557--14132585	14	2.1	14	100	0	58	44	20	13	20	1.85
14139715--14139785	25	2.8	25	95	0	124	29	21	16	32	1.95
14149864--14149990	20	6.3	20	72	4	85	12	28	19	39	1.88
14153723--14153763	19	2.3	19	83	8	50	24	4	36	34	1.77
14155511--14155550	20	2.1	19	85	4	53	10	30	22	37	1.87
14159644--14159821	51	3.5	49	77	13	157	23	16	28	32	1.96
14166859--14166921	22	2.8	24	82	17	66	36	15	25	22	1.94
14184189--14184217	15	1.9	15	100	0	58	10	13	27	48	1.75
14187032--14187177	77	1.9	77	89	0	229	26	20	10	42	1.84
14189317--14189348	15	2.1	15	100	0	64	59	6	6	28	1.46
14208503--14208545	22	2.0	22	95	0	77	9	20	27	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14208623--14208964	43	8.0	43	78	2	267	27	29	20	22	1.99
14208657--14208964	129	2.4	129	76	7	313	27	29	20	22	1.99
14209292--14209351	21	2.9	21	87	0	84	8	48	11	31	1.69
14209353--14209477	66	1.9	66	85	6	173	16	24	16	42	1.88
14209353--14209502	66	2.3	66	82	6	171	16	24	16	42	1.88
14214906--14215251	9	40.9	9	66	21	119	32	2	20	45	1.63
14214919--14215038	25	4.8	25	79	5	134	31	1	20	45	1.61
14214907--14215038	50	2.6	50	85	3	174	32	2	21	43	1.65
14215018--14215062	23	1.9	24	90	4	74	40	0	17	42	1.50
14215048--14215090	12	4.0	11	77	17	54	41	0	11	46	1.40
14215058--14215162	52	2.0	51	82	14	126	33	1	18	46	1.60
14215148--14215229	16	5.0	16	75	5	74	29	2	20	47	1.63
14215251--14215412	32	5.0	32	70	21	106	35	0	16	47	1.52
14215268--14215297	12	2.6	11	90	10	51	43	0	10	46	1.37
14214921--14215373	220	2.1	219	92	2	757	33	1	19	45	1.60
14215278--14215416	21	6.0	21	66	22	66	33	0	16	48	1.51
14215248--14215436	96	2.0	96	91	6	312	34	0	16	48	1.51
14215325--14215396	36	2.0	36	86	5	101	37	1	12	48	1.50
14215327--14215393	23	2.9	23	78	8	73	38	1	10	49	1.46
14215345--14215414	12	6.1	12	76	18	60	35	0	14	50	1.43
14215271--14215470	96	2.1	95	87	7	289	36	1	14	48	1.50
14218485--14218801	46	6.9	46	88	0	463	34	26	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14218476--14218801	92	3.5	92	90	0	510	34	26	14	24	1.94
14220302--14220350	13	3.8	12	84	12	62	2	16	0	81	0.78
14220303--14220343	18	2.2	19	91	4	66	0	19	0	80	0.71
14220301--14220377	12	6.0	12	74	14	64	1	12	2	83	0.82
14220308--14220377	20	3.5	19	81	11	70	1	11	2	84	0.80
14220299--14220377	33	2.4	33	81	6	90	1	13	2	82	0.84
14220335--14220378	16	2.8	15	83	10	52	2	4	6	86	0.77
14222657--14222690	12	2.8	12	81	0	50	8	23	23	44	1.81
14222832--14222878	19	2.5	20	86	6	62	42	10	21	25	1.85
14229200--14229232	14	2.3	15	94	5	59	36	33	0	30	1.58
14229569--14229606	20	2.0	18	90	10	58	63	7	2	26	1.35
14229636--14229940	163	1.9	164	83	6	404	32	22	20	24	1.98
14229621--14229976	41	8.7	41	76	8	323	31	22	21	24	1.98
14232319--14232357	19	2.1	19	85	9	53	46	5	0	48	1.24
14232550--14232591	22	1.9	22	90	0	66	11	23	0	64	1.27
14234033--14234077	22	2.0	22	100	0	90	37	0	13	48	1.42
14248342--14248397	27	2.1	27	100	0	112	17	33	0	48	1.48
14260052--14260116	22	3.0	21	77	4	67	44	16	21	16	1.86
14260155--14260308	32	4.8	32	77	11	127	38	21	18	22	1.93
14260556--14260786	27	8.6	27	85	0	239	24	20	19	35	1.95
14260550--14260756	81	2.6	81	83	0	263	26	19	19	34	1.96
14273354--14273511	75	2.1	75	80	6	169	25	12	12	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14288818--14288861	21	2.1	21	82	0	52	29	27	18	25	1.98
14288827--14288870	21	2.1	21	91	0	70	27	36	18	18	1.94
14292407--14292934	264	2.0	264	99	0	1047	38	7	10	43	1.68
14303238--14303292	25	2.2	24	82	17	69	34	3	1	60	1.25
14348175--14348283	52	2.1	52	91	3	175	37	16	12	33	1.87
14355037--14355135	49	2.0	49	100	0	198	32	10	14	43	1.78
14358571--14358626	23	2.4	23	82	14	62	28	0	8	62	1.25
14363155--14363246	38	2.4	39	89	7	143	46	9	8	34	1.68
14374111--14374150	14	2.9	14	84	0	53	32	7	17	42	1.77
14374134--14374173	20	2.0	20	90	0	62	27	10	12	50	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85