genome.fa.s5.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  33  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10975703--10975877	83	2.1	83	92	0	296	23	17	22	36	1.95
10975950--10976022	23	3.2	23	74	14	78	15	39	4	41	1.66
10976078--10976113	16	2.2	16	90	0	54	5	50	11	33	1.61
10979986--10980106	44	2.8	43	88	5	181	27	17	25	29	1.97
10990284--10990395	55	2.0	55	100	0	224	31	13	14	41	1.84
10998402--10999363	481	2.0	481	100	0	1924	38	19	14	27	1.91
11000321--11000428	43	2.4	43	80	4	117	46	15	5	32	1.69
11002957--11003040	35	2.4	34	86	6	114	28	21	21	28	1.99
11002994--11003142	76	2.0	75	81	5	174	24	19	21	34	1.96
11004253--11004308	16	3.5	16	82	0	76	39	7	23	30	1.81
11004290--11004382	44	2.1	44	92	6	152	33	4	25	36	1.76
11026998--11027022	8	3.1	8	100	0	50	16	0	0	84	0.63
11030865--11031055	27	7.2	27	83	5	237	21	18	19	39	1.92
11037464--11037496	17	1.9	17	100	0	66	21	6	42	30	1.77
11038076--11038117	22	2.1	19	86	13	57	50	0	4	45	1.23
11038121--11038319	99	2.0	100	99	1	391	43	10	8	38	1.68
11047183--11047220	20	1.9	20	88	0	58	50	2	36	10	1.51
11049875--11049937	31	2.0	31	84	0	81	44	28	6	20	1.76
11051137--11051213	30	2.6	30	91	2	120	18	16	24	40	1.91
11057399--11057515	61	2.0	60	84	5	157	50	5	4	40	1.44
11057457--11057595	68	2.0	70	81	9	162	51	4	4	39	1.41
11062617--11062681	29	2.2	29	91	0	103	44	26	13	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11065092--11065129	11	3.5	11	78	7	51	39	2	5	52	1.38
11065088--11065129	21	2.0	21	95	0	75	40	2	4	52	1.35
11076117--11076193	36	2.2	35	86	6	102	11	3	24	59	1.49
11076550--11076609	32	1.9	32	83	6	79	46	15	21	16	1.83
11077642--11077677	13	2.8	13	95	0	63	16	16	0	66	1.25
11084973--11085028	25	2.2	25	93	0	94	25	26	12	35	1.91
11087907--11087950	16	2.8	16	86	6	63	27	0	25	47	1.52
11093112--11093139	6	4.7	6	100	0	56	71	0	28	0	0.86
11094037--11094062	3	8.7	3	100	0	52	69	0	0	30	0.89
11119176--11119320	74	2.0	74	94	0	254	30	23	22	23	1.99
11120963--11121102	56	2.5	56	76	11	151	45	8	10	36	1.69
11121099--11121174	29	2.7	28	89	4	116	27	0	26	46	1.53
11121537--11121915	29	13.1	29	91	1	566	21	0	25	53	1.49
11121537--11121915	144	2.6	144	95	0	661	21	0	25	53	1.49
11121537--11121909	115	3.2	115	92	1	613	21	0	24	53	1.48
11121986--11122034	25	1.9	25	87	4	71	38	16	4	40	1.67
11122131--11122190	24	2.7	21	80	14	84	3	20	35	41	1.68
11122144--11122198	24	2.3	24	93	0	92	3	21	30	43	1.70
11122454--11122499	18	2.6	18	82	0	56	39	8	30	21	1.84
11124244--11124294	22	2.3	22	100	0	102	39	0	33	27	1.57
11125867--11125899	18	1.9	17	88	11	50	48	0	21	30	1.50
11127733--11127763	15	2.1	15	94	5	55	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11139436--11139461	13	2.0	13	100	0	52	15	15	0	69	1.20
11141652--11141707	27	2.1	27	86	6	78	17	30	19	32	1.95
11147744--11147782	19	2.0	19	85	5	51	15	7	2	74	1.15
11149352--11149529	69	2.6	69	81	3	214	24	24	16	34	1.96
11160602--11160741	39	3.4	39	82	9	165	18	20	21	40	1.92
11160579--11160745	45	3.9	44	80	11	177	19	20	20	38	1.93
11160725--11160753	6	4.8	6	100	0	58	17	17	17	48	1.82
11160579--11160738	84	1.9	83	85	1	221	19	20	21	38	1.93
11160725--11160771	18	2.6	18	86	3	58	19	23	14	42	1.88
11160952--11160995	16	2.6	16	82	7	52	52	0	18	29	1.46
11161253--11161284	15	2.3	15	89	10	50	40	0	18	40	1.51
11162015--11162053	20	2.0	20	94	0	69	33	7	12	46	1.71
11164834--11164890	18	3.2	18	89	0	87	42	0	57	0	0.98
11164836--11164888	6	8.8	6	97	0	79	43	0	56	0	0.99
11168229--11168268	14	2.9	14	92	0	62	22	0	12	65	1.26
11168543--11168605	31	2.0	31	100	0	126	19	12	0	68	1.21
11182623--11182688	25	2.6	26	80	4	82	42	1	4	51	1.31
11185946--11186128	77	2.4	77	81	4	208	33	26	16	22	1.96
11185946--11186131	51	3.6	51	78	3	178	33	26	16	23	1.96
11185946--11186128	26	7.1	26	75	4	147	33	26	16	22	1.96
11191795--11191862	29	2.3	29	84	2	91	16	17	22	44	1.87
11194036--11194101	28	2.4	27	82	2	69	42	19	4	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11200054--11200427	186	2.0	187	99	0	741	45	8	12	34	1.71
11207438--11207475	20	1.9	20	88	0	58	39	5	7	47	1.55
11207605--11207644	20	2.0	21	85	5	55	42	12	7	37	1.71
11209975--11210017	22	2.0	22	95	0	77	55	2	9	32	1.44
11214073--11214107	17	2.1	17	94	0	61	31	17	11	40	1.85
11216485--11216550	34	1.9	34	100	0	132	21	31	9	37	1.85
11217010--11217042	11	2.8	12	86	4	50	33	3	12	51	1.54
11217023--11217058	16	2.2	17	90	5	56	33	11	11	44	1.75
11217549--11217614	34	1.9	34	96	0	123	22	30	9	37	1.85
11218612--11218677	34	1.9	34	96	0	123	21	31	10	36	1.87
11221578--11221655	39	2.0	39	89	0	120	35	14	8	41	1.77
11227846--11227914	19	3.6	19	73	23	63	36	14	18	30	1.91
11235590--11235657	34	1.9	36	82	5	86	30	4	16	48	1.65
11240857--11242477	813	2.0	809	99	0	3179	29	17	16	36	1.92
11255493--11255678	88	2.1	88	84	0	246	27	23	24	25	2.00
11255864--11256050	100	1.9	100	83	0	248	28	22	22	25	1.99
11255697--11256260	267	2.1	267	91	1	898	28	20	25	26	1.99
11257077--11257120	19	2.4	19	85	7	56	36	15	13	34	1.87
11257088--11257211	22	5.7	22	88	7	184	38	8	17	35	1.80
11257415--11257459	23	2.0	23	81	0	54	22	0	15	62	1.33
11257817--11258103	50	5.7	50	67	7	170	27	23	23	25	2.00
11257814--11258101	100	2.9	100	87	2	407	28	22	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11258184--11258392	100	2.1	100	81	0	238	30	20	23	25	1.98
11258658--11258819	45	3.6	45	84	4	220	31	20	22	25	1.98
11260343--11260394	19	2.7	20	78	6	52	34	5	5	53	1.49
11269099--11269244	37	4.0	37	96	1	260	24	20	16	38	1.93
11269251--11269287	7	5.3	7	90	0	56	24	27	2	45	1.66
11269258--11269631	52	7.3	52	89	4	530	28	24	14	33	1.94
11269431--11269516	31	3.1	31	60	30	75	29	24	17	29	1.97
11269548--11269651	52	2.0	52	98	0	199	28	22	17	31	1.96
11272462--11272678	40	5.4	40	94	0	353	28	20	20	30	1.98
11274940--11274985	21	2.2	21	84	7	58	50	21	2	26	1.60
11278777--11278848	30	2.4	31	79	9	85	16	25	13	44	1.85
11281465--11281528	25	2.5	25	82	9	76	26	4	3	65	1.27
11281508--11281534	6	4.5	6	100	0	54	29	0	0	70	0.88
11291114--11291165	26	2.0	26	100	0	104	38	7	26	26	1.83
11302888--11302998	46	2.4	46	83	3	125	31	9	18	41	1.81
11306883--11306924	20	2.1	20	86	8	59	33	0	0	66	0.92
11308103--11308140	17	2.2	18	86	13	53	42	0	2	55	1.14
11312032--11312062	2	15.5	2	100	0	62	48	0	0	51	1.00
11317432--11317465	11	3.0	11	86	4	50	35	2	11	50	1.54
11320510--11321021	255	2.0	256	99	0	1017	37	14	13	34	1.85
11327605--11327744	41	3.6	39	72	6	113	27	17	22	32	1.97
11334251--11334571	4	80.2	4	100	0	642	49	25	0	24	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11339069--11339097	13	2.3	13	94	5	51	41	0	48	10	1.37
11341516--11341702	51	3.7	51	82	3	200	24	16	27	31	1.96
11341516--11341702	102	1.8	101	87	5	279	24	16	27	31	1.96
11345205--11345243	10	3.9	10	96	0	69	38	0	7	53	1.30
11349486--11349663	88	2.0	88	93	2	304	35	9	27	26	1.88
11354118--11354152	18	1.9	18	94	0	61	31	0	34	34	1.58
11370133--11370162	16	1.9	16	93	6	53	30	0	20	50	1.49
11376595--11376642	19	2.5	19	100	0	96	39	12	18	29	1.88
11386005--11386041	9	4.1	9	92	0	65	29	10	13	45	1.77
11388514--11388568	28	2.0	28	81	0	65	58	12	10	18	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85