genome.fa.s5.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  58  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20304043--20304110	26	2.7	26	84	6	86	17	20	23	38	1.93
20304064--20304125	26	2.5	26	84	7	76	19	17	24	38	1.93
20329046--20329123	39	2.0	39	100	0	156	35	7	17	38	1.79
20329213--20329272	25	2.3	26	81	13	63	13	11	8	66	1.44
20330969--20331031	31	2.0	31	96	0	117	33	20	11	34	1.88
20333922--20333983	29	2.0	32	84	9	85	51	8	24	16	1.71
20352564--20352632	30	2.2	32	85	10	90	2	34	15	46	1.61
20352615--20352658	23	1.9	23	95	0	79	2	34	18	45	1.62
20353465--20353497	5	6.8	5	86	6	50	18	0	0	81	0.68
20358901--20358958	13	4.5	13	80	0	62	37	24	6	31	1.82
20358898--20358958	26	2.3	26	78	10	70	36	22	6	34	1.81
20363824--20363900	28	2.7	28	80	6	75	27	2	3	66	1.22
20364468--20364519	21	2.6	19	74	11	50	50	3	1	44	1.31
20367073--20367640	284	2.0	285	95	1	1014	21	28	18	31	1.97
20380357--20380396	3	13.3	3	89	10	64	30	2	0	67	1.04
20380699--20380731	10	3.0	11	86	13	50	54	0	0	45	0.99
20382327--20382385	20	3.2	19	84	11	79	55	6	0	37	1.26
20382325--20382387	19	3.3	20	74	14	62	58	6	0	34	1.23
20388158--20388252	45	2.1	44	88	1	136	34	27	5	32	1.79
20388231--20388268	16	2.4	16	90	0	58	34	34	0	31	1.58
20393523--20393552	16	1.9	15	93	6	51	10	0	6	83	0.81
20393526--20393565	18	2.2	18	86	0	53	15	2	2	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20406246--20406339	44	2.1	44	86	3	127	29	18	23	28	1.97
20406262--20406501	44	5.2	45	69	15	125	33	18	19	28	1.95
20406206--20406531	142	2.3	142	91	1	519	33	18	19	28	1.95
20406957--20408802	922	2.0	923	96	0	3442	25	24	20	29	1.99
20409029--20409067	17	2.3	17	86	0	51	15	2	2	79	0.95
20409186--20409244	23	2.6	23	78	21	63	27	5	5	62	1.37
20410953--20410980	2	14.0	2	100	0	56	50	0	0	50	1.00
20411896--20411926	16	1.9	16	93	0	53	74	3	3	19	1.10
20412768--20412812	18	2.4	18	85	10	56	48	4	8	37	1.55
20416034--20416085	9	5.9	9	82	10	56	42	0	1	55	1.10
20416177--20416226	26	1.9	26	83	0	64	72	6	8	14	1.27
20417149--20417198	26	1.9	26	83	0	64	72	6	8	14	1.27
20416132--20418075	972	2.0	972	100	0	3888	36	12	11	39	1.79
20419717--20419741	4	6.2	4	100	0	50	24	0	0	76	0.80
20422862--20422907	22	2.2	21	85	11	60	54	0	2	43	1.12
20422886--20422922	16	2.4	16	90	4	58	45	0	5	48	1.25
20427508--20427536	11	2.6	11	100	0	58	62	0	0	37	0.96
20429891--20429962	6	12.2	6	85	2	74	1	31	0	66	1.00
20431150--20431211	20	3.1	20	69	6	54	43	1	1	53	1.20
20431150--20431225	39	1.9	40	83	2	100	43	1	1	53	1.17
20433071--20433096	13	2.0	13	100	0	52	38	0	0	61	0.96
20433245--20433316	35	2.1	35	97	0	135	45	9	2	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20434351--20434429	39	2.0	39	97	0	149	29	10	13	46	1.76
20434351--20434412	22	3.0	22	64	22	62	29	9	14	46	1.76
20434657--20434753	49	2.0	49	85	2	133	18	13	22	45	1.84
20439503--20439581	39	2.0	39	97	0	149	29	10	13	46	1.76
20439503--20439564	22	3.0	22	64	22	62	29	9	14	46	1.76
20450312--20450340	7	4.1	7	100	0	58	44	0	41	13	1.44
20458771--20458846	11	6.8	12	74	18	74	26	30	1	42	1.64
20458770--20458846	22	3.5	21	80	19	86	25	29	1	42	1.63
20458808--20458905	51	1.9	51	85	8	137	27	23	3	45	1.67
20459829--20459866	20	1.9	20	89	10	60	36	2	5	55	1.37
20460655--20460694	18	2.2	18	90	0	62	20	30	5	45	1.72
20461096--20461144	14	3.6	14	71	17	50	42	34	0	22	1.54
20461124--20462562	21	67.0	21	74	11	910	45	29	0	24	1.58
20461103--20461175	27	2.9	26	73	23	84	42	36	0	20	1.52
20461124--20462562	43	33.5	41	75	12	874	45	29	0	24	1.58
20461773--20461841	28	2.4	29	85	4	88	46	34	0	18	1.50
20461920--20461996	37	2.1	37	90	4	120	48	29	0	22	1.51
20462197--20462332	7	18.4	7	78	10	94	48	26	0	25	1.51
20462232--20462321	8	11.8	8	82	11	109	48	25	0	25	1.51
20465726--20466292	126	4.5	125	84	2	708	30	23	16	30	1.96
20465726--20466292	251	2.3	251	87	2	793	30	23	16	30	1.96
20470550--20470639	40	2.2	40	92	0	144	26	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20470381--20470837	192	2.4	196	81	4	525	31	21	20	26	1.98
20470743--20470828	40	2.2	40	82	0	109	37	22	17	23	1.94
20470590--20471077	152	3.2	152	82	2	539	30	18	20	29	1.97
20470925--20471003	40	2.0	40	84	0	104	30	20	24	25	1.98
20471191--20471237	7	6.9	7	75	4	51	14	2	38	44	1.58
20471179--20471237	14	4.3	14	76	2	57	16	1	35	45	1.58
20471282--20471448	7	24.0	7	70	3	86	17	0	34	47	1.48
20471347--20471389	20	2.1	21	91	4	70	20	0	32	46	1.51
20471585--20471734	74	2.0	75	98	1	293	48	2	9	40	1.50
20472045--20472069	12	2.1	12	100	0	50	8	12	32	48	1.69
20472068--20472145	40	2.0	40	89	0	120	34	23	30	11	1.90
20472263--20472318	18	3.1	18	82	5	60	10	42	10	35	1.74
20473003--20473160	78	2.0	79	97	1	300	43	11	8	36	1.72
20476685--20476783	41	2.4	41	96	0	180	27	22	28	22	1.99
20477853--20477978	9	14.0	9	75	14	91	46	19	0	34	1.51
20477834--20477976	56	2.6	55	90	6	213	45	18	0	35	1.50
20479696--20479721	12	2.2	12	100	0	52	34	7	26	30	1.85
20486793--20486822	14	2.1	15	93	6	53	43	6	10	40	1.64
20488517--20488580	2	32.0	2	87	0	92	0	53	0	46	1.00
20492242--20492284	14	3.0	15	80	13	54	34	0	2	62	1.08
20493381--20493423	14	3.0	15	80	13	54	34	0	2	62	1.08
20494180--20494244	3	22.3	3	76	17	66	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20494180--20494247	26	2.6	26	88	9	95	66	0	33	0	0.92
20498850--20498895	21	2.2	20	84	3	56	43	4	2	50	1.34
20511271--20511334	3	21.3	3	93	0	110	0	29	0	70	0.88
20512128--20512300	50	3.5	50	77	9	145	23	18	23	34	1.96
20512127--20512300	75	2.3	75	82	2	197	23	18	24	33	1.96
20512137--20512276	25	5.6	25	82	3	122	22	18	25	34	1.96
20512186--20512300	25	4.6	25	81	4	133	22	19	26	32	1.97
20530669--20530728	29	2.0	29	93	6	102	56	6	16	20	1.62
20533627--20533669	12	3.6	12	87	6	61	30	13	16	39	1.87
20551298--20551455	43	3.7	43	82	7	146	29	29	17	23	1.97
20554781--20555027	106	2.3	107	83	4	336	28	11	12	47	1.76
20556016--20556126	41	2.7	42	74	10	113	39	27	16	17	1.90
20556150--20556451	114	2.6	114	92	2	498	25	25	23	25	2.00
20556364--20556524	73	2.2	73	95	0	286	26	21	24	27	1.99
20556238--20556709	187	2.5	188	86	3	668	24	23	24	28	2.00
20556539--20556709	73	2.4	73	86	3	238	22	22	24	29	1.99
20558199--20558231	16	2.0	17	88	5	50	18	24	0	57	1.40
20558343--20558514	85	2.0	86	98	1	337	43	4	6	44	1.52
20566735--20566780	9	5.1	9	81	0	56	36	8	39	15	1.78
20568574--20568618	10	4.5	10	86	5	56	11	4	4	80	1.01
20571978--20572034	15	3.8	15	83	0	69	43	3	29	22	1.70
20571993--20572034	10	4.2	10	81	0	57	45	2	30	21	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20572498--20572582	37	2.4	35	77	14	86	30	3	1	64	1.17
20572575--20572599	12	2.1	12	100	0	50	24	8	8	60	1.52
20579337--20579372	12	3.0	12	87	0	54	33	0	0	66	0.92
20582639--20582679	3	13.7	3	100	0	82	0	31	0	68	0.90
20591556--20592605	528	2.0	522	88	3	1538	32	12	13	41	1.83
20593949--20593994	19	2.4	18	82	10	56	23	19	8	47	1.77
20595872--20595913	19	2.2	19	91	8	68	16	16	2	64	1.40
20596879--20596918	7	5.7	7	85	11	55	75	0	12	12	1.06
20596879--20596924	14	3.3	14	77	17	51	73	0	13	13	1.09
20596879--20596926	20	2.3	21	85	3	62	70	0	14	14	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85