genome.fa.s5.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  27  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8945098--8945378	43	6.6	43	76	11	269	23	16	25	34	1.95
8945101--8945378	85	3.3	85	94	0	468	23	16	25	34	1.95
8947389--8947442	27	2.0	28	85	3	74	44	3	9	42	1.54
8951583--8951643	24	2.5	26	81	10	74	37	8	11	42	1.71
8953875--8953918	20	2.2	20	91	0	70	20	13	25	40	1.89
8956362--8956512	74	2.0	74	100	0	302	34	15	13	36	1.87
8965229--8965268	20	2.0	20	100	0	80	25	5	15	55	1.60
8965378--8965436	26	2.3	26	82	5	66	18	15	33	32	1.92
8965456--8965588	26	5.1	26	80	3	124	23	13	27	36	1.92
8965486--8965587	52	2.0	52	86	0	141	24	14	24	36	1.93
8975624--8975665	21	2.0	21	85	0	57	11	21	45	21	1.84
8990496--8990535	6	6.7	6	100	0	80	15	0	0	85	0.61
8998001--8999079	360	3.0	360	97	0	2025	33	18	14	33	1.91
9005147--9005254	20	5.3	20	60	8	56	20	31	13	34	1.92
9005128--9005334	41	5.1	41	88	1	290	20	30	15	33	1.93
9006494--9006527	12	2.9	12	86	4	52	32	0	0	67	0.91
9010935--9010959	12	2.1	12	100	0	50	68	24	0	8	1.16
9019048--9019149	52	2.0	51	84	7	136	40	8	12	38	1.75
9031100--9031199	39	2.6	39	78	0	101	32	7	19	42	1.78
9031978--9032018	20	2.0	20	86	9	57	26	24	19	29	1.98
9036271--9036610	27	12.6	27	83	3	416	45	20	17	17	1.86
9036271--9036656	81	4.8	80	79	11	349	44	19	17	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9036823--9036872	26	1.9	26	95	0	91	16	20	24	40	1.91
9037562--9037625	33	1.9	33	100	0	128	26	9	9	54	1.62
9038072--9038118	23	2.0	23	95	0	85	40	23	21	14	1.90
9038826--9038920	48	2.0	48	93	0	163	40	26	17	15	1.90
9053242--9053274	12	2.8	12	95	0	57	27	15	12	45	1.81
9055105--9055246	29	4.9	29	79	5	153	37	15	28	19	1.92
9062069--9062147	26	3.0	26	81	3	97	44	21	17	16	1.87
9062318--9062423	27	3.9	27	87	4	160	20	14	22	42	1.88
9063100--9063144	15	3.0	14	78	15	54	64	2	33	0	1.06
9063094--9063144	19	2.6	20	81	12	61	62	1	35	0	1.06
9063094--9063144	10	4.8	11	81	16	63	62	1	35	0	1.06
9064094--9064231	72	2.0	68	87	11	199	40	3	5	50	1.42
9065062--9065106	15	3.0	14	78	15	54	64	2	33	0	1.06
9065056--9065106	19	2.6	20	81	12	61	62	1	35	0	1.06
9065056--9065106	10	4.8	11	81	16	63	62	1	35	0	1.06
9066056--9066193	72	2.0	68	87	11	199	40	3	5	50	1.42
9069689--9069719	13	2.4	13	100	0	62	48	12	0	38	1.42
9070405--9070461	10	5.2	11	74	21	57	21	35	0	43	1.52
9070422--9070496	22	3.4	22	94	1	123	28	33	0	38	1.57
9070481--9070563	40	2.1	40	95	0	148	31	25	1	42	1.63
9073075--9073109	18	1.9	18	94	0	61	25	31	8	34	1.86
9073508--9073606	44	2.2	44	85	7	130	38	0	11	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9073520--9073606	44	2.0	45	88	6	133	36	0	11	51	1.38
9073612--9073669	23	2.5	23	94	0	98	48	20	3	27	1.66
9077155--9077506	126	2.8	125	85	2	483	33	21	15	29	1.94
9077913--9077960	24	2.0	24	84	8	62	54	6	31	8	1.55
9081534--9081569	3	12.0	3	100	0	72	66	0	0	33	0.92
9098963--9098999	17	2.2	17	95	0	65	75	0	0	24	0.80
9098963--9099014	21	2.8	17	74	20	50	75	1	0	23	0.91
9105186--9105247	20	3.1	20	83	4	72	33	9	9	46	1.69
9112928--9112975	20	2.4	20	79	6	53	29	14	14	41	1.85
9113376--9113426	23	2.3	23	90	6	79	23	5	0	70	1.09
9130236--9130380	68	2.1	67	87	1	200	35	18	22	23	1.96
9134123--9134175	24	2.2	24	83	6	63	32	32	0	35	1.58
9134133--9134235	24	4.1	24	82	16	129	32	32	0	35	1.58
9134139--9134219	30	3.0	27	89	10	114	28	33	0	38	1.57
9134194--9134244	22	2.3	22	90	6	77	31	33	0	35	1.58
9134280--9134343	30	2.1	30	91	0	101	31	1	0	67	1.00
9137199--9137495	123	2.4	124	93	2	510	31	22	17	28	1.97
9155682--9155787	54	2.0	54	86	0	149	35	21	19	22	1.96
9157062--9157257	107	1.8	107	82	2	250	23	23	20	32	1.98
9163502--9163544	14	2.8	16	86	10	54	30	2	4	62	1.28
9169360--9169428	21	3.2	21	81	2	75	24	34	14	26	1.94
9184382--9184476	3	31.7	3	91	0	154	1	29	0	69	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9187217--9187250	13	2.6	13	86	13	52	41	5	14	38	1.70
9188314--9188438	50	2.5	50	90	0	187	24	23	21	31	1.98
9188314--9188438	25	5.0	25	77	11	130	24	23	21	31	1.98
9189105--9189281	43	4.1	43	88	0	237	32	29	15	22	1.95
9189105--9189338	43	5.5	42	83	1	130	32	26	14	25	1.95
9189550--9189671	42	2.9	42	81	3	129	32	26	14	26	1.95
9193107--9193144	13	2.8	14	88	8	60	36	5	0	57	1.21
9193476--9193518	7	6.1	7	86	0	59	30	48	0	20	1.50
9193466--9193515	21	2.3	21	82	3	64	34	44	2	20	1.63
9194894--9194932	7	5.6	7	84	0	51	30	51	0	17	1.46
9195149--9195369	115	1.9	115	99	0	433	42	29	1	26	1.66
9195746--9195903	41	3.8	42	82	8	182	34	23	20	21	1.97
9196656--9196685	12	2.5	12	94	0	51	23	40	30	6	1.80
9196851--9196908	30	1.9	30	96	0	107	20	37	25	15	1.92
9196850--9196918	30	2.3	30	87	0	102	18	33	30	17	1.94
9196998--9197035	14	2.7	14	95	0	67	36	5	18	39	1.73
9203398--9203494	49	2.0	48	87	2	140	42	21	14	21	1.88
9203687--9203750	17	3.6	17	74	15	67	46	14	12	26	1.79
9203705--9203758	17	2.9	19	71	20	60	46	16	12	24	1.82
9203688--9203758	36	2.0	36	97	0	133	46	15	12	25	1.81
9208528--9208624	49	2.0	48	87	2	140	42	20	14	22	1.88
9212239--9212271	15	2.1	16	88	5	50	36	0	36	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9219461--9219502	20	2.0	21	86	13	61	73	14	2	9	1.18
9222181--9222267	37	2.4	37	92	3	142	24	22	14	37	1.92
9230882--9231059	43	4.2	43	82	7	218	26	30	17	25	1.97
9230885--9231063	85	2.1	86	88	3	263	27	29	17	25	1.97
9231363--9231453	43	2.1	43	87	2	130	43	9	10	35	1.73
9238465--9238516	19	2.7	19	79	5	61	63	1	0	34	1.06
9239842--9239872	2	15.5	2	93	0	53	51	3	0	45	1.17
9240309--9240335	13	2.1	13	100	0	54	37	0	0	62	0.95
9244800--9244832	15	2.1	16	88	5	50	30	6	0	63	1.18
9248857--9248911	21	2.6	21	97	0	101	54	16	5	23	1.63
9252182--9252211	15	2.0	15	93	0	51	83	13	3	0	0.77
9252310--9252342	17	2.1	16	88	11	50	15	15	57	12	1.65
9252876--9252931	29	2.0	28	85	3	76	41	1	3	53	1.29
9255713--9255745	2	16.5	2	93	0	57	3	0	45	51	1.16
9255787--9255833	23	2.0	23	100	0	94	25	21	4	48	1.68
9260941--9260970	10	2.9	10	95	5	51	0	13	0	86	0.57
9262584--9262613	2	14.5	2	93	6	51	46	0	3	50	1.18
9269214--9269278	31	2.1	31	94	0	112	66	0	0	33	0.92
9269335--9269379	22	2.0	22	100	0	90	40	0	31	28	1.57
9280095--9280136	19	2.2	20	95	4	77	50	23	11	14	1.76
9290291--9290360	36	1.9	36	88	0	104	18	21	21	38	1.93
9292209--9292244	14	2.5	15	86	9	56	36	38	2	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9295415--9295444	13	2.4	13	94	5	53	30	0	6	63	1.20
9301009--9301061	26	2.0	26	96	0	97	18	22	33	24	1.97
9301038--9301188	42	3.6	43	79	7	157	22	18	24	34	1.96
9308338--9308392	20	2.8	20	85	0	74	20	25	1	52	1.56
9309104--9309180	40	1.9	40	81	5	93	35	15	31	18	1.92
9309118--9309275	40	4.0	40	81	8	128	35	16	31	17	1.92
9309118--9309297	80	2.2	80	82	7	215	35	16	31	17	1.92
9309173--9309238	20	3.3	19	68	16	53	34	15	34	15	1.88
9309183--9309277	20	4.8	19	69	8	64	38	15	30	14	1.88
9309166--9309297	40	3.3	40	86	2	185	35	15	31	17	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85