genome.fa.s5.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  73  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25322881--25323177	89	3.4	89	73	6	264	25	22	21	29	1.99
25323385--25323425	16	2.7	15	85	7	64	31	2	21	43	1.66
25324488--25324690	59	3.4	60	85	4	243	8	23	15	52	1.71
25329422--25329499	3	26.3	3	75	12	54	57	1	7	33	1.35
25329919--25329957	8	4.9	8	100	0	78	89	0	0	10	0.48
25329918--25329978	24	2.6	22	82	5	59	85	0	6	8	0.75
25334031--25334077	21	2.2	21	85	7	60	21	10	36	31	1.88
25334068--25334130	27	2.3	27	84	10	76	28	14	28	28	1.95
25335846--25335914	31	2.2	31	87	7	95	65	0	1	33	1.02
25338300--25338455	79	2.0	79	100	0	312	37	15	22	25	1.93
25339947--25340076	62	2.1	62	100	0	260	38	20	16	24	1.93
25340608--25340677	10	6.9	9	75	18	50	75	1	1	21	0.96
25340598--25340677	20	3.9	19	75	15	63	73	1	2	22	1.02
25340646--25340672	5	5.4	5	100	0	54	81	0	0	18	0.69
25340610--25340672	21	3.0	20	72	19	58	76	0	1	22	0.88
25341876--25341912	9	4.1	9	92	0	65	45	13	10	29	1.77
25343376--25344076	89	7.9	89	88	2	1000	20	24	28	26	1.99
25343474--25344075	45	13.5	45	71	7	359	20	24	28	26	1.99
25348934--25348962	15	1.9	15	100	0	58	62	0	0	37	0.96
25348935--25348968	15	2.3	15	89	0	50	67	2	0	29	1.05
25350251--25350326	3	25.7	3	77	5	66	59	1	3	35	1.24
25350356--25350423	16	4.2	17	73	17	56	70	0	4	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25352755--25352851	39	2.5	40	86	8	153	44	23	4	27	1.72
25366762--25366867	46	2.5	43	83	13	139	33	31	4	30	1.78
25366779--25366867	46	2.0	46	91	4	146	35	30	5	28	1.80
25366849--25366901	16	3.3	16	91	0	88	24	33	3	37	1.74
25369896--25370070	39	4.5	39	78	8	160	45	21	4	29	1.70
25369960--25370025	22	3.3	21	69	28	63	45	25	3	25	1.68
25369899--25370073	76	2.3	76	82	5	192	45	21	4	28	1.70
25372202--25372363	30	5.4	30	78	6	159	37	12	24	25	1.91
25372110--25372358	89	2.8	89	86	3	324	37	13	24	24	1.92
25372115--25372348	59	4.0	59	71	10	165	36	13	25	24	1.92
25376276--25376311	18	2.1	18	94	5	65	13	38	30	16	1.88
25382073--25382099	7	3.9	7	100	0	54	74	0	25	0	0.83
25382229--25382278	15	3.2	16	78	18	61	74	0	24	2	0.93
25388471--25388552	32	2.6	32	82	0	101	28	3	17	51	1.62
25391002--25391051	25	2.0	25	84	0	64	40	18	14	28	1.89
25392189--25392336	46	3.2	46	80	1	163	35	21	16	27	1.94
25398780--25398839	30	2.0	30	100	0	120	23	16	30	30	1.96
25405295--25405542	115	2.2	115	99	0	487	35	15	9	39	1.80
25405877--25406011	45	3.0	45	89	2	184	37	23	12	25	1.90
25408719--25408879	79	2.0	80	98	1	315	32	12	4	50	1.61
25411720--25411777	30	1.9	30	89	3	89	46	1	20	31	1.61
25415415--25415485	28	2.5	28	79	4	81	26	16	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25415520--25415620	28	3.6	28	71	14	73	23	13	22	39	1.90
25417221--25417248	12	2.3	12	100	0	56	71	7	0	21	1.09
25418088--25418278	50	3.7	50	78	6	168	26	20	27	25	1.99
25419440--25419499	29	2.1	29	100	0	120	26	13	13	46	1.80
25429714--25429753	15	2.8	14	88	7	62	22	2	0	75	0.93
25430168--25430194	2	13.5	2	100	0	54	51	0	0	48	1.00
25430671--25430717	16	2.8	17	87	12	62	51	2	0	46	1.13
25430681--25430717	8	4.6	8	90	9	58	54	0	0	45	1.00
25431296--25431335	15	2.8	14	88	7	62	22	2	0	75	0.93
25431392--25431611	109	2.0	110	97	1	415	45	7	7	39	1.59
25431859--25431885	2	13.5	2	100	0	54	51	0	0	48	1.00
25432362--25432408	16	2.8	17	87	12	62	51	2	0	46	1.13
25432372--25432408	8	4.6	8	90	9	58	54	0	0	45	1.00
25436389--25436429	2	20.5	2	94	0	73	46	0	2	51	1.14
25437198--25437236	2	19.5	2	94	0	69	46	0	2	51	1.14
25436167--25437783	807	2.0	808	99	0	3218	32	13	18	35	1.90
25439999--25440249	32	7.8	32	88	0	342	31	8	16	43	1.79
25440393--25440511	43	2.8	43	82	6	145	26	16	29	27	1.97
25450116--25450277	86	1.9	86	89	0	252	30	20	20	28	1.97
25451390--25451424	15	2.4	15	90	4	54	48	0	8	42	1.33
25457801--25457883	5	16.4	5	77	13	55	15	3	2	78	1.00
25457806--25457854	21	2.3	21	82	10	55	12	2	4	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25457852--25457898	12	3.9	12	76	17	53	23	6	0	70	1.10
25458045--25458108	22	2.8	23	81	11	69	25	50	9	15	1.74
25465950--25466009	30	2.0	31	86	3	86	40	0	40	20	1.52
25466522--25466558	19	1.9	19	88	0	56	62	2	0	35	1.10
25466664--25466708	7	6.6	7	84	5	65	71	0	0	28	0.87
25467128--25467154	7	3.9	7	100	0	54	40	0	0	59	0.98
25467116--25467183	26	2.7	24	75	9	64	38	0	1	60	1.06
25467644--25467672	6	4.8	6	100	0	58	34	0	65	0	0.93
25478328--25478616	98	3.0	96	88	3	429	40	2	17	40	1.61
25479011--25479061	11	5.1	11	77	22	67	45	0	0	54	0.99
25486069--25486101	17	1.9	17	93	0	57	66	15	0	18	1.25
25494783--25494863	10	8.6	9	72	11	56	27	1	4	66	1.19
25494783--25494868	19	4.5	18	70	20	59	29	1	5	63	1.24
25494783--25494860	29	2.7	29	81	16	92	28	1	5	65	1.22
25494792--25494868	29	2.7	28	82	13	95	29	1	6	62	1.28
25494783--25494883	29	3.5	28	75	15	91	30	0	4	63	1.22
25494913--25494984	31	2.3	31	87	2	108	33	1	4	61	1.24
25494920--25494993	31	2.5	30	86	4	96	33	1	4	60	1.24
25498894--25498986	45	2.1	44	92	6	152	36	25	4	33	1.76
25498968--25499039	16	4.5	16	89	0	108	27	25	6	40	1.81
25499279--25499411	28	4.7	27	72	16	83	36	0	3	58	1.21
25500090--25500156	32	2.1	33	83	8	84	59	13	2	23	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25500477--25500531	16	3.4	17	75	12	53	63	0	0	36	0.95
25502002--25502041	21	1.9	21	85	10	55	72	10	7	10	1.28
25503053--25503543	98	5.0	98	90	1	739	35	16	16	31	1.91
25503556--25503617	29	2.1	29	90	0	97	40	16	17	25	1.90
25505719--25505795	27	2.9	27	90	3	120	16	24	38	19	1.92
25505979--25506016	19	2.0	19	89	0	58	50	7	5	36	1.54
25507547--25507590	19	2.3	18	81	11	52	54	0	9	36	1.32
25507624--25507682	25	2.3	24	83	13	66	55	1	3	38	1.26
25511750--25511796	23	2.0	23	84	8	60	27	12	27	31	1.93
25512650--25512696	23	2.0	23	95	0	85	17	19	36	27	1.93
25515150--25515190	18	2.2	19	86	4	57	17	2	4	75	1.08
25524848--25524875	14	2.0	14	100	0	56	85	0	14	0	0.59
25524847--25524971	39	3.1	39	87	8	162	70	1	12	15	1.24
25535711--25535772	29	2.1	29	96	0	115	30	9	17	41	1.82
25541886--25541923	20	1.9	20	84	10	51	36	0	2	60	1.11
25545235--25545324	39	2.4	38	80	9	103	53	11	16	18	1.72
25545761--25545791	16	2.0	16	93	6	55	19	6	19	54	1.65
25548754--25548884	45	2.9	45	83	0	172	22	22	16	38	1.93
25548850--25548976	45	2.8	46	82	4	161	18	20	17	43	1.88
25550870--25550952	42	2.0	42	95	4	150	32	9	19	38	1.84
25551183--25551362	46	3.9	46	75	2	137	29	17	20	32	1.95
25558663--25558894	50	4.7	49	81	9	134	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25558699--25558941	50	4.7	50	80	8	240	23	27	20	27	1.99
25569128--25569193	20	3.4	19	70	19	55	30	4	16	48	1.66
25569126--25569253	39	3.3	39	84	2	159	31	5	19	43	1.74
25578293--25578337	22	2.0	23	86	4	65	44	6	0	48	1.29
25581725--25581983	44	5.9	44	69	10	143	30	21	17	30	1.96
25581450--25581973	175	3.0	174	89	4	819	29	21	17	31	1.96
25590471--25590516	19	2.4	19	85	7	58	45	10	19	23	1.82
25594386--25594425	19	2.0	20	85	4	55	47	0	15	37	1.45
25600343--25600398	25	2.2	25	83	0	67	26	28	14	30	1.95
25625785--25626556	43	18.0	43	77	3	629	40	21	14	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85