genome.fa.s5.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  66  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23090967--23091004	18	2.0	20	90	10	62	21	26	0	52	1.47
23091149--23091210	9	7.0	9	73	21	51	35	3	1	59	1.23
23091150--23091210	17	3.5	17	70	24	54	36	3	1	59	1.24
23101489--23101536	19	2.7	18	81	15	55	31	0	31	37	1.58
23108096--23108136	22	2.0	21	86	13	59	31	4	24	39	1.76
23109230--23109474	75	3.3	75	97	0	463	25	12	23	38	1.89
23110927--23111087	83	1.9	83	93	0	277	22	22	16	38	1.93
23116814--23116889	38	2.0	38	84	0	98	27	11	10	50	1.72
23117862--23117956	18	5.3	18	72	20	58	60	1	2	36	1.16
23119714--23119921	43	4.8	43	84	2	267	26	27	18	27	1.98
23121326--23121410	40	2.1	40	84	4	109	49	14	5	30	1.66
23121383--23121578	86	2.3	86	88	0	284	44	15	8	31	1.76
23124821--23124891	21	3.4	21	82	3	81	32	43	0	23	1.54
23124845--23124877	14	2.4	14	94	0	57	30	51	0	18	1.46
23124874--23124930	14	4.0	15	72	17	50	42	31	0	26	1.56
23125318--23125673	41	8.9	41	80	5	350	29	27	20	22	1.98
23125394--23125546	76	2.0	76	85	0	207	30	27	19	22	1.98
23125321--23125673	117	2.9	116	79	9	332	29	27	20	22	1.98
23125748--23125834	40	2.2	40	85	0	111	22	19	20	36	1.95
23128896--23128929	17	1.9	17	88	5	50	58	5	0	35	1.22
23129041--23129152	9	12.4	9	69	16	54	61	1	1	34	1.17
23129042--23129133	27	3.4	26	75	11	62	58	2	2	36	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23129115--23129152	17	2.2	19	86	13	55	71	2	0	26	1.00
23139602--23139627	7	3.7	7	100	0	52	84	0	0	15	0.62
23144092--23144261	29	5.6	28	68	15	99	34	14	25	25	1.94
23144123--23144232	32	3.5	32	75	7	127	29	15	30	25	1.96
23144091--23144241	61	2.5	61	93	0	257	32	13	26	27	1.94
23144091--23144261	61	2.8	61	86	7	240	33	14	25	26	1.94
23146998--23147073	36	2.1	37	82	2	91	15	11	40	31	1.84
23149957--23149997	20	2.0	20	85	0	55	36	17	29	17	1.92
23149967--23150031	20	3.2	20	82	8	87	32	15	33	18	1.92
23154007--23154174	27	6.2	27	82	6	162	44	19	14	22	1.86
23154002--23154179	81	2.2	81	80	5	207	43	18	15	22	1.87
23161471--23161513	22	2.0	22	90	0	68	27	23	16	32	1.96
23162054--23162097	18	2.4	18	84	0	61	50	20	2	27	1.60
23177051--23177127	32	2.5	31	80	4	82	23	18	29	28	1.97
23185605--23185700	30	3.4	28	84	9	124	27	21	26	25	2.00
23186047--23186284	27	8.8	27	80	3	246	18	20	18	43	1.89
23190806--23191312	102	5.0	102	90	2	788	20	19	27	32	1.97
23192178--23192372	49	4.0	49	90	0	282	23	13	29	33	1.93
23192538--23192599	27	2.3	27	97	2	117	25	6	25	41	1.79
23193800--23193831	12	2.6	13	85	14	50	37	0	6	56	1.25
23195405--23195830	213	2.0	213	96	0	780	31	8	19	40	1.82
23199909--23199954	23	2.0	23	87	8	67	32	6	23	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23204952--23205046	28	3.4	28	85	5	104	30	21	23	25	1.99
23208242--23208336	28	3.4	28	85	5	104	30	21	23	25	1.99
23208441--23208515	26	2.9	26	85	0	105	38	24	22	14	1.92
23216633--23216712	28	2.9	28	86	3	81	38	10	25	26	1.87
23216661--23216738	28	2.8	28	86	2	102	39	12	20	26	1.89
23216969--23217055	27	3.2	27	75	3	77	37	11	24	26	1.89
23231098--23231198	49	2.1	49	86	3	141	31	8	13	45	1.75
23232805--23233206	203	2.0	206	87	4	582	36	13	19	31	1.90
23245640--23245679	18	2.2	19	90	4	64	25	25	0	50	1.50
23248399--23248424	2	13.0	2	100	0	52	50	0	0	50	1.00
23248494--23248539	23	2.0	23	84	12	60	23	2	30	43	1.66
23270213--23270250	19	2.0	19	89	0	58	50	7	5	36	1.54
23270346--23270432	22	3.7	22	92	7	129	54	13	0	32	1.40
23270480--23270551	27	2.7	27	93	0	117	34	0	12	52	1.39
23270644--23270711	27	2.5	27	90	4	102	17	23	41	17	1.90
23271061--23271122	27	2.3	27	91	0	106	14	32	22	30	1.94
23280204--23280232	14	2.1	14	100	0	58	51	6	13	27	1.66
23290086--23290512	213	2.0	214	99	0	847	35	9	17	36	1.83
23290776--23290804	14	2.1	14	100	0	58	27	0	13	58	1.36
23294095--23294238	33	4.3	34	73	5	114	34	17	20	27	1.95
23302034--23302071	2	19.0	2	100	0	76	50	0	0	50	1.00
23309858--23309904	21	2.2	22	92	7	87	36	0	19	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23309866--23309918	21	2.6	21	87	3	72	43	1	18	35	1.62
23310349--23310403	17	3.4	16	76	19	53	43	1	0	54	1.10
23310332--23310386	17	3.0	20	74	17	55	43	1	1	52	1.22
23310391--23310448	31	1.9	29	82	6	71	39	3	5	51	1.41
23310421--23310534	59	1.9	59	83	5	147	42	2	6	49	1.41
23312931--23312976	21	2.2	21	84	0	56	41	15	13	30	1.85
23315973--23316143	60	2.9	59	88	5	233	39	22	12	25	1.89
23317087--23317141	25	2.2	25	93	3	94	32	7	12	47	1.69
23325154--23325196	22	2.0	21	86	4	59	41	0	2	55	1.12
23325155--23325208	22	2.4	21	79	11	54	40	1	3	53	1.29
23325183--23325223	17	2.5	17	92	4	66	36	4	7	51	1.51
23325312--23325347	19	1.9	18	88	5	54	30	2	8	58	1.42
23327225--23327296	30	2.4	30	85	0	108	22	9	51	16	1.73
23327272--23327335	30	2.1	30	91	0	101	20	7	53	18	1.69
23327283--23327365	42	2.0	42	85	0	112	16	8	56	18	1.64
23327343--23327395	24	2.2	24	89	0	79	15	13	58	13	1.64
23327391--23327530	30	4.5	30	68	10	91	17	10	53	18	1.71
23327343--23327563	96	2.3	93	81	6	280	16	10	54	18	1.70
23327370--23327455	42	2.0	42	86	0	118	18	11	53	16	1.72
23327452--23327731	72	4.1	71	77	12	278	15	10	55	19	1.68
23327544--23327641	30	3.3	30	70	16	94	13	11	55	20	1.68
23327589--23327632	15	2.9	15	82	0	61	9	9	59	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23327468--23327741	132	2.1	132	96	0	503	14	9	55	20	1.66
23327691--23327773	30	2.8	30	77	3	87	16	10	54	18	1.71
23327606--23327755	72	2.1	72	89	0	228	15	9	55	20	1.67
23327732--23327777	18	2.6	18	82	0	65	13	8	54	23	1.66
23327468--23327773	132	2.3	132	92	2	463	15	9	55	20	1.67
23328260--23328325	21	3.1	21	72	8	62	12	6	59	22	1.55
23328250--23328313	30	2.1	30	91	0	101	15	4	57	21	1.56
23328312--23328376	33	2.0	33	84	0	85	21	9	50	18	1.74
23328306--23328514	72	2.9	70	84	6	238	20	8	51	19	1.73
23328423--23328520	42	2.3	40	78	10	106	17	6	53	23	1.66
23328409--23328472	30	2.1	30	88	0	92	18	7	53	20	1.69
23328462--23328660	30	6.4	30	70	11	96	20	7	52	19	1.69
23328481--23328538	18	3.2	18	67	0	53	18	6	53	20	1.67
23328557--23328598	21	2.0	21	86	9	59	19	9	57	14	1.64
23347718--23347758	21	2.0	21	90	9	66	39	9	0	51	1.35
23347721--23347765	20	2.2	21	84	11	58	44	8	2	44	1.47
23347721--23347776	21	2.7	20	81	10	51	44	10	1	42	1.49
23351471--23351527	23	2.5	23	79	0	69	12	24	17	45	1.83
23351487--23351536	23	2.2	23	81	0	55	14	20	20	46	1.84
23354946--23354993	12	4.0	12	77	0	51	4	20	52	22	1.64
23354946--23354993	18	2.7	18	78	12	53	4	20	52	22	1.64
23355802--23355858	19	3.1	18	80	12	62	50	8	0	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23355823--23355872	26	2.0	25	84	4	64	48	8	0	44	1.32
23355876--23356978	550	2.0	551	99	0	2199	37	12	12	37	1.81
23360624--23360650	9	3.0	9	100	0	54	44	33	0	22	1.53
23362021--23362064	6	7.5	6	89	5	72	81	2	0	15	0.78
23363656--23363714	19	3.1	18	74	11	55	67	1	11	18	1.30
23363733--23363763	16	2.0	16	93	6	55	74	6	0	19	1.03
23363975--23364005	5	6.2	5	92	0	53	22	0	54	22	1.44
23369071--23369192	41	3.0	41	100	0	244	34	14	22	28	1.94
23375675--23375718	17	2.7	16	76	16	54	34	0	9	56	1.31
23378484--23378513	3	10.0	3	100	0	60	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85