genome.fa.s5.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  49  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16625268--16625326	23	2.5	23	78	8	66	25	5	33	35	1.78
16628622--16628671	18	2.6	19	87	9	66	4	20	2	74	1.08
16628628--16628671	19	2.4	17	82	14	52	4	18	2	75	1.09
16632352--16632476	62	2.0	62	85	0	169	30	18	32	19	1.95
16636339--16636391	23	2.4	22	75	9	54	11	15	1	71	1.22
16640152--16640187	17	2.1	18	89	5	56	8	22	5	63	1.43
16641537--16641570	12	2.9	12	91	4	52	14	2	8	73	1.19
16645932--16646470	274	2.0	269	92	3	902	45	17	16	20	1.85
16646475--16646528	25	2.2	25	83	6	65	46	11	16	25	1.80
16649869--16649908	20	2.0	20	85	0	53	50	10	10	30	1.69
16649857--16649923	34	1.9	35	87	3	100	46	11	8	32	1.72
16649892--16649931	14	2.9	14	84	0	53	42	17	7	32	1.77
16656105--16656146	10	3.7	12	81	18	54	69	2	16	11	1.29
16656165--16656205	18	2.3	19	79	12	50	68	4	19	7	1.32
16656189--16656231	12	3.6	12	87	0	59	60	2	20	16	1.46
16685379--16685411	12	2.8	12	86	13	50	21	9	6	63	1.45
16697924--16698158	116	2.0	117	94	0	418	31	10	25	33	1.89
16705913--16705946	15	2.1	17	89	10	54	44	0	11	44	1.40
16707495--16707720	117	1.9	117	95	0	407	33	10	25	30	1.90
16711289--16711341	23	2.4	22	75	9	54	9	18	1	69	1.25
16711334--16711373	18	2.2	18	86	0	53	7	25	2	65	1.32
16723098--16723219	50	2.4	50	81	2	145	33	13	13	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16735805--16735851	25	1.9	24	86	4	67	51	10	19	19	1.75
16755749--16755784	13	2.8	13	91	0	54	16	2	8	72	1.21
16758496--16758534	17	2.3	17	86	0	51	69	10	2	17	1.28
16760922--16761106	51	3.7	50	75	11	180	29	27	18	24	1.98
16760920--16761104	101	1.8	101	89	3	291	29	26	18	24	1.98
16766882--16766932	15	3.3	15	81	13	50	7	19	0	72	1.08
16766891--16766964	30	2.4	30	80	6	87	2	20	1	75	1.00
16766913--16766963	6	8.5	6	79	12	52	0	19	1	78	0.85
16766911--16766964	24	2.3	23	87	9	74	0	20	1	77	0.86
16766891--16766956	12	4.8	13	72	20	55	3	19	1	75	1.01
16778955--16779195	120	2.0	121	99	0	475	42	12	9	35	1.76
16787464--16787518	29	2.0	27	82	13	67	61	10	12	14	1.56
16796362--16796412	23	2.2	23	92	0	84	31	9	17	41	1.82
16798267--16798315	20	2.5	19	83	9	62	48	16	10	24	1.76
16801957--16802187	38	6.1	38	84	4	286	37	25	19	17	1.93
16803178--16803208	11	2.9	11	95	4	55	6	16	0	77	0.97
16809535--16809577	22	2.0	21	86	4	59	20	13	6	58	1.59
16811031--16811076	22	2.1	22	100	0	92	36	4	17	41	1.69
16812760--16812818	25	2.4	25	100	0	118	28	22	8	40	1.83
16833714--16833757	12	3.3	12	77	22	52	18	0	0	81	0.68
16833721--16833755	18	1.9	18	88	11	54	20	0	0	80	0.72
16836060--16836101	19	2.2	20	83	12	52	69	0	23	7	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16848577--16848643	36	2.0	34	82	11	84	56	4	23	14	1.57
16862793--16862851	9	6.4	9	73	15	50	25	3	1	69	1.13
16862791--16862849	27	2.2	26	82	11	75	28	3	1	66	1.18
16862819--16862861	19	2.3	18	80	4	50	25	4	2	67	1.22
16862865--16863047	90	2.1	90	83	8	232	32	9	21	36	1.87
16863530--16863668	25	5.9	23	80	13	119	51	7	2	37	1.46
16863545--16863651	25	4.4	25	82	9	134	51	8	2	37	1.47
16863894--16863930	18	2.1	19	85	10	51	51	0	8	40	1.32
16873003--16873266	69	3.8	69	83	1	305	17	23	23	36	1.95
16874680--16874826	20	7.3	20	75	6	127	35	20	32	11	1.89
16874683--16874826	40	3.6	40	77	8	150	36	20	32	11	1.88
16874683--16874824	60	2.4	60	73	2	142	35	20	33	11	1.88
16878566--16878683	41	2.9	41	87	0	164	33	27	22	16	1.95
16882452--16882489	19	2.0	20	94	5	69	36	10	34	18	1.85
16900096--16900138	21	2.0	21	86	0	59	48	4	2	44	1.36
16912585--16912623	20	2.0	21	85	10	55	41	10	15	33	1.81
16922552--16922793	50	4.7	50	78	11	174	27	21	28	23	1.99
16922995--16923045	12	4.2	12	78	9	50	56	3	21	17	1.57
16922996--16923034	20	2.0	20	90	10	62	56	5	23	15	1.59
16931750--16931841	45	2.0	46	95	2	168	20	18	19	41	1.91
16932414--16932440	14	1.9	14	100	0	54	29	14	22	33	1.94
16937335--16937467	28	4.8	28	86	0	167	35	13	24	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16952813--16953667	430	2.0	431	92	0	1444	36	22	20	21	1.95
16960323--16960360	20	1.9	19	85	15	51	39	28	18	13	1.88
16963001--16963071	22	3.5	22	71	25	84	60	7	5	26	1.45
16963011--16963071	18	3.3	18	68	4	59	60	8	4	26	1.45
16963001--16963074	37	2.0	37	97	0	139	62	6	5	25	1.42
16967672--16968240	286	2.0	285	91	1	933	39	20	11	28	1.87
16977799--16977838	10	4.0	10	90	0	62	12	7	10	70	1.35
16988178--16988237	22	2.7	22	89	0	93	28	20	31	20	1.97
17014723--17014792	29	2.4	30	87	4	106	15	28	12	42	1.84
17014751--17014940	59	3.2	59	73	10	197	22	23	13	41	1.89
17014855--17014911	29	2.0	29	85	0	78	19	22	14	43	1.86
17014724--17014940	119	1.8	119	87	0	326	21	23	13	41	1.88
17014691--17014940	30	8.4	30	71	9	129	22	24	13	39	1.90
17019892--17020029	47	2.8	49	76	11	158	23	15	25	34	1.95
17030121--17030153	16	2.1	16	88	11	50	54	0	3	42	1.15
17030119--17030164	22	2.1	22	84	15	60	54	0	4	41	1.20
17037483--17037652	51	3.4	50	77	8	173	30	15	24	30	1.95
17039209--17039233	13	1.9	13	100	0	50	48	12	8	32	1.69
17053402--17053450	15	3.3	15	94	0	71	57	6	24	12	1.58
17053900--17053940	21	2.0	21	85	0	55	7	24	2	65	1.30
17063912--17063977	25	2.6	25	81	9	80	30	12	21	36	1.90
17071682--17071788	53	2.0	53	96	0	196	26	20	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17084430--17084672	50	4.7	50	82	4	218	25	21	27	24	1.99
17087865--17087944	41	2.0	41	97	0	151	32	12	18	36	1.89
17089722--17090017	50	5.8	50	83	4	297	27	20	28	23	1.99
17096759--17096806	21	2.3	21	92	0	78	50	8	6	35	1.58
17099363--17099425	31	2.1	29	88	8	92	57	15	4	22	1.57
17099735--17099870	50	2.7	51	82	3	168	33	24	14	27	1.94
17114276--17114434	25	6.4	25	81	4	160	29	19	22	28	1.98
17114879--17114919	17	2.4	17	100	0	82	14	17	41	26	1.88
17118095--17118146	27	2.0	26	81	7	61	19	7	9	63	1.48
17118954--17118993	5	8.0	5	94	0	62	40	5	0	55	1.22
17119027--17119064	17	2.3	17	86	4	51	44	0	21	34	1.52
17134233--17134433	43	4.7	43	93	0	330	26	14	23	34	1.94
17145929--17146367	219	2.0	220	99	0	871	39	10	19	30	1.85
17149301--17149376	38	2.0	38	97	0	143	40	10	22	26	1.86
17154216--17155283	533	2.0	533	100	0	2136	36	22	13	28	1.91
17155351--17155391	22	1.9	21	90	5	64	31	2	17	48	1.60
17156966--17157006	22	1.9	21	90	5	64	31	2	17	48	1.60
17161213--17161245	15	2.2	15	100	0	66	18	0	21	60	1.36
17162617--17162662	21	2.2	20	84	3	56	32	21	13	32	1.92
17166546--17167693	579	2.0	579	100	0	2296	27	12	24	35	1.92
17171027--17171223	50	3.8	51	79	6	184	23	27	21	26	1.99
17178570--17178750	50	3.6	50	77	3	159	21	26	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17183017--17183042	12	2.2	12	100	0	52	34	19	15	30	1.93
17183383--17183414	5	6.4	5	92	0	55	56	0	0	43	0.99
17187776--17188045	135	2.0	135	95	0	486	26	14	22	35	1.93
17193563--17193616	22	2.5	21	74	14	56	9	20	0	70	1.14
17198460--17198499	18	2.2	18	86	8	55	12	17	5	65	1.44
17199418--17199460	7	6.5	6	82	17	50	65	0	20	13	1.27
17199421--17199462	13	3.1	13	86	6	57	59	0	23	16	1.37
17200675--17202056	132	10.4	132	90	1	2066	29	18	23	27	1.98
17201655--17201861	44	4.7	44	68	13	111	32	18	21	27	1.97
17200672--17202056	663	2.1	663	91	0	2243	29	18	24	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85