genome.fa.s5.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  42  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14374119--14374185	34	1.9	35	90	3	109	31	8	13	46	1.74
14374113--14374189	14	5.0	15	71	20	52	32	9	15	42	1.78
14379756--14379855	50	2.0	50	98	0	191	30	13	27	30	1.93
14379895--14379980	25	3.5	24	81	12	95	36	17	24	22	1.95
14385853--14386012	85	1.9	85	83	10	211	28	20	21	29	1.98
14385963--14386268	44	7.1	44	69	10	173	27	19	21	32	1.97
14385899--14386280	129	3.0	128	88	3	527	26	19	21	31	1.97
14398770--14399191	108	4.0	107	89	1	609	29	14	18	36	1.92
14410778--14410967	45	4.2	45	91	0	263	30	16	24	27	1.97
14411055--14411431	44	8.7	44	72	13	266	31	22	22	24	1.98
14410973--14411465	85	5.7	85	71	13	337	30	22	21	25	1.99
14410968--14411479	129	4.0	129	89	2	785	31	22	21	25	1.98
14413423--14413460	19	2.1	19	85	14	53	47	5	13	34	1.65
14413439--14413864	107	4.0	107	88	3	592	30	14	17	36	1.90
14415035--14415871	418	2.0	419	99	0	1667	34	11	9	44	1.72
14418850--14418887	20	1.9	20	100	0	76	47	5	26	21	1.71
14422115--14422149	12	2.9	12	95	0	61	17	22	8	51	1.72
14422107--14422157	12	4.2	12	82	9	59	19	23	5	50	1.69
14422386--14422578	50	3.7	50	81	4	215	23	27	21	26	1.99
14436688--14436863	27	6.5	26	82	5	163	17	18	21	42	1.89
14436688--14436863	54	3.3	53	80	4	201	17	18	21	42	1.89
14436687--14436863	81	2.2	80	81	8	214	18	18	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14443513--14443557	17	2.6	17	96	0	81	13	13	51	22	1.75
14447248--14447685	232	1.9	233	92	0	734	42	14	9	32	1.78
14448131--14448190	26	2.3	27	97	2	113	43	10	11	35	1.75
14456210--14456347	50	2.7	51	80	1	170	31	27	17	23	1.97
14456180--14456357	51	3.5	50	78	1	176	30	27	17	24	1.97
14469193--14469239	24	1.9	24	86	4	67	36	0	38	25	1.56
14470257--14470456	27	7.4	27	85	3	251	41	20	19	19	1.91
14470256--14470455	81	2.5	81	87	3	287	41	19	19	19	1.91
14470256--14470483	54	4.2	54	80	5	221	40	19	19	20	1.91
14472855--14472899	15	2.9	15	76	3	54	20	20	24	35	1.96
14477219--14477479	129	2.0	130	97	2	499	37	13	10	39	1.78
14477562--14477598	20	1.9	18	89	10	56	54	5	0	40	1.24
14481791--14481861	35	2.0	35	94	0	124	19	14	25	40	1.89
14491823--14492072	124	2.0	122	86	6	342	42	13	16	28	1.85
14499091--14499247	78	2.0	78	90	2	244	29	12	21	36	1.90
14501708--14501855	75	2.0	74	87	1	215	40	16	14	27	1.88
14506005--14506039	17	2.1	17	100	0	70	40	5	22	31	1.78
14512309--14512339	9	3.4	9	90	0	53	25	12	22	38	1.90
14514085--14514117	17	1.9	17	88	11	50	42	0	3	54	1.15
14514158--14514186	2	14.5	2	100	0	58	48	0	0	51	1.00
14519953--14519988	19	1.9	19	94	5	65	13	0	36	50	1.43
14519976--14520481	230	2.2	230	98	0	976	34	2	19	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14522530--14522575	14	3.3	14	85	11	51	58	13	0	28	1.35
14523735--14523830	11	9.0	11	73	14	76	43	2	30	23	1.65
14523719--14523818	51	2.0	51	90	4	157	46	1	27	26	1.60
14525100--14525158	31	1.9	30	86	3	82	52	0	1	45	1.10
14527048--14527078	13	2.4	13	94	0	53	74	0	0	25	0.82
14532964--14533219	34	7.4	33	69	11	100	34	21	19	24	1.96
14532957--14533264	70	4.4	70	88	0	438	34	23	19	23	1.96
14532996--14533255	36	7.4	36	74	8	212	35	22	18	23	1.96
14541562--14541908	163	2.2	157	83	9	427	29	11	17	41	1.85
14554719--14554784	27	2.4	27	92	2	105	30	4	12	53	1.58
14562703--14562793	45	2.0	45	85	2	121	37	28	6	27	1.82
14562720--14562804	45	1.9	44	83	7	109	35	28	9	27	1.88
14563842--14563866	9	2.8	9	100	0	50	88	0	0	12	0.53
14563968--14563994	7	3.9	7	100	0	54	59	0	25	14	1.36
14573485--14573562	38	2.0	39	87	9	115	48	7	11	32	1.68
14574507--14574540	17	2.0	17	94	0	59	14	17	55	11	1.68
14575581--14575622	17	2.6	16	85	7	57	23	0	23	52	1.47
14575595--14575629	18	2.0	17	88	5	52	22	2	22	51	1.61
14576855--14577039	46	4.0	46	92	0	307	33	8	29	29	1.86
14586398--14586557	41	3.9	41	94	0	275	27	20	23	28	1.99
14587879--14587988	53	2.1	54	85	1	150	39	11	23	25	1.89
14589893--14590003	33	3.4	33	91	0	177	13	12	35	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14593601--14593740	51	2.8	49	81	11	167	23	17	27	31	1.97
14593745--14593844	46	2.2	44	81	11	114	24	17	25	34	1.96
14593945--14594017	37	1.9	38	86	2	103	42	2	23	31	1.68
14603776--14603812	18	2.1	18	94	0	65	59	16	10	13	1.61
14604437--14604470	17	2.0	17	88	0	50	70	0	0	29	0.87
14615637--14615696	12	5.1	12	78	9	70	31	1	1	65	1.13
14615637--14615696	6	10.2	6	74	15	54	31	1	1	65	1.13
14615637--14615696	9	6.8	9	74	14	54	31	1	1	65	1.13
14615640--14615699	24	2.5	24	84	7	79	31	3	1	63	1.20
14615839--14615898	26	2.3	26	83	13	72	28	5	5	61	1.38
14615836--14615898	25	2.5	26	82	12	78	28	4	4	61	1.36
14626151--14626188	16	2.4	16	86	4	51	23	13	15	47	1.81
14626214--14626255	16	2.6	16	74	11	50	19	9	21	50	1.75
14627939--14628139	43	4.8	43	70	16	154	32	30	14	21	1.94
14628003--14628192	42	4.6	43	71	10	137	37	29	13	19	1.89
14627957--14628187	122	1.9	122	100	0	462	36	30	13	19	1.90
14634455--14634589	7	19.0	7	72	11	69	45	34	0	19	1.50
14634455--14634589	14	9.5	14	75	12	87	45	34	0	19	1.50
14634456--14634589	21	6.3	21	75	8	94	46	34	0	19	1.50
14634764--14634950	41	4.6	41	95	0	329	32	31	19	16	1.94
14634983--14635117	40	3.4	40	82	6	152	19	18	25	36	1.94
14639710--14639786	24	3.3	24	75	12	72	31	11	32	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14641427--14641476	26	1.9	26	100	0	100	44	16	28	12	1.83
14661721--14661777	27	2.1	27	100	0	114	24	24	19	31	1.98
14661731--14661789	27	2.2	27	84	0	73	32	20	20	27	1.97
14665883--14665929	16	2.9	16	81	12	60	25	10	0	63	1.26
14673734--14673919	43	4.3	43	88	1	273	31	32	17	18	1.94
14674142--14674176	12	2.9	12	100	0	70	34	0	5	60	1.21
14674523--14674608	43	2.0	43	88	0	127	44	10	11	33	1.75
14676074--14676111	19	2.0	19	100	0	76	52	10	15	21	1.72
14678799--14678898	7	14.3	7	80	8	51	41	39	0	20	1.52
14678788--14678845	14	4.0	15	80	8	57	34	44	1	18	1.60
14678806--14678873	21	3.2	22	85	8	70	36	44	0	19	1.51
14678865--14678916	7	7.3	7	84	4	59	46	32	0	21	1.52
14678861--14678923	14	4.4	14	88	4	81	47	31	0	20	1.51
14679707--14679878	71	2.4	73	84	5	226	26	26	21	25	1.99
14679696--14680066	186	2.0	186	88	3	559	25	26	21	26	1.99
14679892--14680137	73	3.4	73	88	2	343	26	27	20	26	1.99
14679965--14680325	186	1.9	187	88	2	537	26	27	20	25	1.99
14679726--14689404	259	37.4	259	99	0	19340	25	27	20	25	1.99
14680151--14680396	73	3.4	73	88	2	343	26	27	20	26	1.99
14680224--14680584	186	1.9	187	88	2	537	26	27	20	25	1.99
14680410--14680655	73	3.4	73	88	2	343	26	27	20	26	1.99
14680483--14680843	186	1.9	187	88	2	537	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14680669--14680914	73	3.4	73	88	2	343	26	27	20	26	1.99
14680742--14681102	186	1.9	187	88	2	537	26	27	20	25	1.99
14680928--14681173	73	3.4	73	88	2	343	26	27	20	26	1.99
14681001--14681361	186	1.9	187	88	2	537	26	27	20	25	1.99
14681187--14681432	73	3.4	73	88	2	343	26	27	20	26	1.99
14681260--14681620	186	1.9	187	88	2	537	26	27	20	25	1.99
14681446--14681691	73	3.4	73	88	2	343	26	27	20	26	1.99
14681519--14681879	186	1.9	187	88	2	537	26	27	20	25	1.99
14681705--14681950	73	3.4	73	88	2	343	26	27	20	26	1.99
14681778--14682138	186	1.9	187	88	2	537	26	27	20	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85