genome.fa.s5.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  45  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15093411--15093443	13	2.5	13	100	0	66	45	6	18	30	1.73
15093406--15093448	13	2.7	18	66	33	51	53	4	13	27	1.60
15100826--15100874	20	2.5	20	89	0	71	44	22	26	6	1.76
15107901--15107934	17	2.0	17	100	0	68	35	5	0	58	1.22
15107901--15107936	18	2.1	17	89	5	54	36	5	0	58	1.22
15108368--15109050	217	3.1	216	92	1	1161	28	20	17	32	1.96
15108989--15109423	129	3.4	129	90	1	669	25	21	18	33	1.96
15110638--15110682	7	6.4	7	82	14	58	15	15	0	68	1.21
15110647--15110698	8	6.6	8	81	16	56	11	15	0	73	1.11
15110638--15110682	13	3.2	15	84	12	60	15	15	0	68	1.21
15111554--15111604	15	3.7	14	82	10	52	9	5	3	80	1.01
15111567--15111604	15	2.7	15	88	8	53	10	5	5	78	1.06
15111589--15111656	6	11.3	6	100	0	136	16	0	16	67	1.23
15111643--15111715	35	2.1	34	87	7	103	9	6	8	75	1.19
15111572--15111712	40	3.3	40	77	16	124	12	4	10	72	1.25
15115943--15115981	14	2.7	14	84	4	51	58	2	2	35	1.25
15117975--15118002	6	4.7	6	100	0	56	0	50	0	50	1.00
15120338--15120363	12	2.2	12	100	0	52	7	15	30	46	1.74
15120371--15120485	40	2.9	40	79	5	135	31	21	23	23	1.98
15120369--15120503	40	3.4	40	77	8	134	34	21	22	20	1.96
15120539--15120737	41	4.9	41	90	3	294	18	23	29	28	1.98
15120539--15120737	81	2.4	82	90	0	319	18	23	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15121374--15121444	22	3.3	22	74	4	72	18	1	45	35	1.58
15121418--15121480	7	8.7	7	80	5	54	20	3	38	38	1.69
15121418--15121482	29	2.2	30	78	13	73	23	3	36	36	1.70
15124737--15124851	57	2.0	57	98	0	221	34	21	26	17	1.95
15128006--15128117	43	2.6	42	84	4	136	25	16	29	28	1.97
15129314--15129352	20	1.9	20	89	5	60	48	0	2	48	1.15
15129619--15129668	9	5.4	9	81	13	66	22	42	2	34	1.65
15129618--15129668	19	2.8	18	88	5	75	21	41	1	35	1.65
15133868--15134030	81	2.0	81	89	0	245	35	20	16	26	1.94
15144351--15144441	45	2.0	44	85	2	119	35	28	6	29	1.83
15144426--15144457	16	2.0	16	100	0	64	37	37	0	25	1.56
15154432--15154844	205	2.0	205	100	0	826	27	20	15	37	1.92
15162286--15162336	26	1.9	27	84	4	68	35	7	3	52	1.49
15165652--15165678	4	6.8	4	100	0	54	0	0	74	25	0.83
15172179--15172372	51	3.8	51	74	10	166	25	14	27	32	1.95
15172378--15172462	46	1.9	43	85	7	116	23	16	27	32	1.96
15172577--15172649	37	1.9	38	86	2	103	45	2	20	31	1.65
15180142--15180186	23	1.9	24	86	4	65	35	2	11	51	1.50
15191047--15191084	19	2.0	19	85	10	51	21	39	0	39	1.53
15195101--15195159	24	2.6	23	86	5	75	8	20	18	52	1.71
15196191--15196235	23	2.0	23	86	0	63	15	31	17	35	1.92
15202211--15202274	32	2.0	32	90	0	101	31	18	6	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15202837--15202876	21	1.9	21	84	0	53	65	2	5	27	1.27
15203834--15204357	126	4.0	140	73	17	409	29	18	22	29	1.97
15203969--15204372	126	3.2	125	80	6	471	29	18	21	29	1.97
15205518--15206256	22	34.0	22	85	4	887	23	1	31	43	1.61
15205518--15206256	43	17.0	43	84	5	821	23	1	31	43	1.61
15205874--15205971	7	14.0	7	68	19	62	18	1	36	43	1.57
15206197--15206255	14	4.3	14	75	12	59	20	0	37	42	1.52
15206197--15206248	27	1.9	27	92	0	86	19	0	38	42	1.51
15205524--15206227	65	10.9	64	83	6	575	23	1	31	43	1.61
15207639--15207676	20	1.9	20	84	10	51	55	7	2	34	1.43
15208353--15208450	51	1.9	51	87	4	144	45	3	24	26	1.67
15208412--15208488	11	6.9	11	73	24	72	45	1	27	25	1.61
15208412--15208488	33	2.3	33	82	10	102	45	1	27	25	1.61
15209217--15209256	21	2.0	21	85	5	55	45	0	5	50	1.23
15209540--15209642	51	2.0	51	100	0	206	39	27	15	17	1.90
15209822--15209944	61	2.0	61	100	0	246	32	24	16	26	1.96
15216840--15216885	11	4.2	11	86	8	58	23	28	0	47	1.52
15216840--15216882	10	4.0	10	82	11	50	23	30	0	46	1.52
15217972--15218004	7	4.7	7	92	0	57	27	3	15	54	1.55
15218662--15218701	18	2.2	18	90	0	62	17	32	7	42	1.77
15222360--15222761	126	3.2	126	94	1	682	28	22	17	31	1.97
15222804--15222987	96	1.9	95	83	3	235	39	17	4	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15222787--15223010	95	2.3	96	77	4	236	41	18	4	36	1.70
15223038--15223103	33	1.9	33	87	6	96	48	39	0	12	1.40
15236101--15236127	5	5.4	5	100	0	54	18	0	0	81	0.69
15247881--15247920	18	2.2	18	86	0	53	27	7	7	57	1.53
15247974--15248059	26	3.4	25	74	16	65	25	5	4	63	1.36
15250542--15250603	21	3.0	21	83	4	72	50	17	19	12	1.78
15250558--15250605	21	2.3	21	92	0	78	45	18	22	12	1.83
15252674--15252770	40	2.4	41	83	8	128	38	20	21	19	1.94
15252807--15253164	41	8.7	41	89	0	509	25	21	22	29	1.99
15258506--15258732	43	5.3	43	90	0	321	19	18	31	29	1.96
15258796--15258837	22	1.9	22	90	0	66	40	26	21	11	1.88
15261791--15261833	18	2.4	17	77	11	50	34	4	2	58	1.32
15265995--15266029	17	2.0	18	88	5	54	40	28	0	31	1.57
15277968--15278028	30	2.0	30	96	0	113	27	19	14	37	1.91
15286558--15286588	1	31.0	1	93	0	53	0	3	0	96	0.21
15293514--15293587	34	2.1	34	87	7	105	71	8	6	13	1.29
15293535--15293605	34	2.1	33	82	7	81	76	4	8	11	1.15
15294477--15294503	13	2.1	13	100	0	54	70	0	14	14	1.17
15294462--15294512	8	6.5	8	80	17	54	72	0	15	11	1.12
15294477--15294521	15	3.2	14	87	9	58	68	0	15	15	1.21
15295793--15296030	119	2.0	120	92	0	397	32	20	21	26	1.97
15296257--15296373	44	2.7	44	86	2	155	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15296489--15296734	44	5.7	44	69	6	160	30	19	21	28	1.98
15296241--15296685	232	1.9	232	90	0	710	32	18	20	27	1.97
15296638--15296815	44	4.2	41	69	11	115	29	17	20	31	1.96
15296535--15296813	129	2.2	129	90	0	432	30	18	20	30	1.96
15296589--15296779	44	4.4	44	68	9	122	32	17	19	29	1.95
15296664--15297062	219	1.8	219	93	0	690	32	17	19	30	1.95
15297083--15297344	50	5.2	50	73	1	229	35	22	19	21	1.96
15297060--15297344	100	2.8	100	89	0	417	34	22	20	22	1.97
15312250--15312291	18	2.3	18	87	0	57	23	30	2	42	1.67
15315954--15316010	18	3.2	18	76	19	57	28	26	0	45	1.54
15316162--15316243	37	2.2	37	88	0	119	35	23	18	23	1.96
15316767--15316799	17	2.1	17	88	11	52	39	0	9	51	1.34
15316957--15317206	125	2.0	125	100	0	500	41	5	16	36	1.71
15327252--15327290	16	2.5	15	84	12	51	12	15	0	71	1.14
15329662--15329711	26	2.0	26	88	7	77	26	0	6	68	1.13
15329684--15329771	15	5.7	15	76	9	88	28	1	1	69	1.03
15329696--15329779	31	2.8	31	82	8	93	28	2	0	69	1.01
15329669--15329767	47	2.1	48	81	10	116	27	1	1	70	1.00
15329926--15330013	15	5.7	15	76	9	88	28	1	1	69	1.03
15329938--15330021	31	2.8	31	82	8	93	28	2	0	69	1.01
15329915--15330009	47	2.0	48	82	10	115	27	1	1	70	1.01
15329659--15330143	242	2.0	243	99	0	963	31	8	8	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15345186--15345429	51	4.8	51	76	7	230	31	26	15	25	1.96
15345181--15345425	101	2.4	99	84	6	314	32	26	15	26	1.96
15348562--15348603	18	2.3	18	100	0	84	80	9	0	9	0.89
15348561--15348605	10	4.7	10	89	10	76	82	8	0	8	0.85
15348623--15348664	17	2.5	17	88	7	59	73	2	23	0	0.94
15348624--15348664	6	7.2	6	81	10	50	75	2	21	0	0.92
15348624--15348664	11	3.6	11	80	6	55	75	2	21	0	0.92
15349543--15349660	59	2.0	59	86	6	168	50	16	21	11	1.76
15350599--15350637	3	13.0	3	100	0	78	33	0	0	66	0.92
15350604--15350718	12	9.0	12	74	17	58	33	2	0	62	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85