genome.fa.s5.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  53  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18496903--18497063	78	2.1	78	91	1	261	30	16	19	33	1.94
18502586--18502613	13	2.2	13	100	0	56	28	21	14	35	1.92
18506121--18506153	11	3.0	11	87	12	50	60	27	0	12	1.32
18506475--18506517	9	4.3	10	83	16	54	74	2	2	20	1.04
18507459--18507594	68	2.0	68	100	0	272	33	25	17	23	1.96
18509378--18509413	17	2.1	18	89	5	56	11	11	2	75	1.16
18515013--18515062	21	2.4	21	80	3	57	24	20	18	38	1.93
18536890--18536935	9	5.1	9	87	10	67	32	10	13	43	1.78
18544994--18545041	24	2.0	24	91	0	78	52	10	4	33	1.55
18546844--18546891	24	2.0	24	91	0	78	52	10	4	33	1.55
18547545--18547789	94	2.6	94	88	2	361	27	10	20	41	1.85
18547639--18547801	47	3.5	46	72	12	152	26	10	22	40	1.86
18548306--18548484	52	3.5	51	80	3	198	19	7	34	37	1.81
18550669--18551074	142	2.9	141	90	1	616	45	6	8	39	1.59
18551050--18551280	75	3.1	76	87	5	312	30	12	8	49	1.69
18555847--18555876	13	2.3	13	94	0	51	33	3	13	50	1.58
18555977--18556051	39	1.9	39	97	0	141	24	25	25	25	2.00
18556019--18556203	50	3.7	50	81	0	217	24	23	29	22	1.99
18569751--18569806	5	11.4	5	74	11	53	0	39	0	60	0.97
18570481--18570627	27	5.4	27	81	8	156	42	17	19	19	1.89
18570799--18570879	26	3.1	26	84	7	101	19	23	20	35	1.96
18577172--18577227	5	11.4	5	74	11	53	1	41	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18577190--18577232	15	2.9	15	80	10	52	4	37	0	58	1.19
18577899--18578154	27	9.5	27	80	5	234	40	17	20	22	1.91
18578331--18578409	26	3.0	26	86	0	113	16	21	24	37	1.93
18586397--18586440	22	2.0	22	95	0	79	29	22	9	38	1.85
18590196--18590380	29	6.4	29	72	12	139	37	10	26	25	1.88
18590216--18590453	29	8.2	29	70	10	121	36	11	26	26	1.90
18592617--18592645	15	1.9	15	100	0	58	20	17	20	41	1.90
18600566--18600610	23	2.0	23	90	0	72	31	17	22	28	1.97
18621157--18621217	30	2.0	30	100	0	122	45	13	13	27	1.80
18621305--18621341	16	2.3	16	95	0	65	43	13	18	24	1.86
18641917--18641945	12	2.4	12	100	0	58	48	37	0	13	1.43
18649275--18649388	48	2.4	48	87	0	156	28	21	25	25	1.99
18652987--18653016	14	2.1	14	93	0	51	40	0	43	16	1.48
18657663--18657711	20	2.5	20	93	0	80	12	24	4	59	1.50
18664390--18664414	13	1.9	13	100	0	50	24	0	16	60	1.36
18664484--18664612	29	4.4	29	79	3	127	39	8	27	24	1.84
18668467--18668492	2	13.0	2	100	0	52	50	0	50	0	1.00
18671388--18671413	6	4.3	6	100	0	52	46	0	0	53	1.00
18673008--18673055	19	2.4	20	86	6	62	62	2	2	33	1.18
18684683--18684708	13	2.0	13	100	0	52	15	46	30	7	1.74
18687378--18687416	20	2.0	20	90	10	62	15	23	5	56	1.59
18687617--18687863	50	4.8	50	76	7	194	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18692063--18692094	17	1.9	16	93	6	55	18	18	34	28	1.95
18702606--18702664	26	2.3	26	84	0	73	38	5	16	38	1.71
18703618--18703675	29	2.0	29	100	0	116	27	3	10	58	1.47
18710368--18710404	19	1.9	19	88	0	56	56	8	10	24	1.60
18728454--18728563	57	1.9	57	85	3	150	20	27	12	39	1.89
18730726--18730806	40	2.0	41	90	7	130	64	0	11	24	1.26
18735353--18735448	25	3.8	24	83	5	111	22	25	19	32	1.98
18735352--18735472	50	2.4	49	80	10	138	24	24	19	31	1.98
18740563--18740622	15	3.7	16	75	22	54	36	0	11	51	1.38
18740563--18740610	21	2.3	22	79	13	57	37	0	10	52	1.36
18740743--18740882	40	3.5	40	78	6	133	27	20	23	28	1.99
18741066--18741117	16	3.2	16	78	10	61	34	3	25	36	1.74
18755553--18755660	24	4.4	25	85	3	98	25	23	21	30	1.99
18755593--18755663	24	3.0	24	93	0	115	28	23	21	26	1.99
18770321--18770358	10	3.8	10	92	0	67	26	2	21	50	1.62
18773782--18773850	30	2.3	30	82	12	79	34	2	5	56	1.38
18773773--18773823	20	2.5	20	75	6	50	37	3	5	52	1.44
18773814--18773882	20	3.4	19	75	13	59	30	1	2	65	1.16
18775090--18775125	10	3.5	10	88	3	54	55	5	16	22	1.62
18775871--18776091	73	3.0	73	100	0	442	45	4	25	24	1.71
18776180--18776206	2	13.5	2	100	0	54	51	0	48	0	1.00
18780181--18780215	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18780451--18780486	16	2.2	16	100	0	72	38	36	0	25	1.56
18782395--18782436	22	2.0	20	86	9	57	52	9	4	33	1.55
18782402--18782448	22	2.2	22	84	3	60	55	8	4	31	1.49
18793452--18793717	135	2.0	135	95	0	478	24	14	23	37	1.92
18796594--18796623	16	1.9	15	93	6	51	70	16	0	13	1.18
18800359--18800442	42	2.0	42	100	0	168	33	23	14	28	1.94
18803082--18803142	19	3.2	19	75	11	52	75	8	6	9	1.19
18803063--18803142	38	2.1	38	81	4	90	76	7	7	8	1.17
18803566--18803600	13	2.6	13	90	4	52	68	0	20	11	1.20
18804784--18805351	87	6.5	87	93	1	942	29	22	23	24	1.99
18805099--18805236	44	3.2	44	65	17	124	28	21	23	26	1.99
18805487--18805694	44	4.7	43	75	10	152	29	18	24	27	1.98
18811067--18811093	14	1.9	14	100	0	54	33	0	22	44	1.53
18811971--18812025	17	3.2	18	82	10	69	80	12	1	5	0.97
18814347--18814378	15	2.2	14	94	5	55	6	28	12	53	1.62
18815268--18815301	18	1.9	17	94	5	59	35	11	11	41	1.78
18815753--18815907	72	2.2	72	88	4	224	25	5	12	56	1.57
18817823--18817884	13	4.8	13	78	7	63	38	17	4	38	1.71
18817823--18817884	26	2.4	26	78	10	81	38	17	4	38	1.71
18818808--18818859	20	2.4	22	84	12	72	36	0	1	61	1.07
18818812--18818851	19	2.0	20	90	4	64	32	0	2	65	1.06
18821744--18821776	17	1.9	17	93	0	57	24	24	6	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18826598--18826623	13	2.0	13	100	0	52	61	15	0	23	1.33
18830054--18830091	20	1.9	20	100	0	76	55	0	23	21	1.44
18830059--18830108	25	2.0	25	88	0	73	54	0	26	20	1.45
18836492--18836606	44	2.6	44	76	6	108	33	16	20	30	1.94
18836956--18837984	133	7.7	133	91	0	1632	29	24	15	29	1.96
18852890--18852915	11	2.4	11	100	0	52	34	38	0	26	1.57
18858139--18858286	57	2.5	61	78	14	171	30	20	25	23	1.99
18862228--18862326	38	2.6	39	79	7	114	29	23	17	30	1.97
18868851--18868989	70	2.0	70	94	2	244	30	32	11	25	1.91
18891294--18891362	36	1.9	36	93	0	120	30	23	34	11	1.90
18904023--18904231	92	2.3	91	86	5	278	45	3	3	46	1.39
18904159--18904206	26	1.9	25	84	16	64	45	0	2	52	1.12
18904381--18904422	15	2.7	16	82	14	52	45	0	2	52	1.13
18904372--18904413	15	2.9	15	82	10	52	47	0	0	52	1.00
18904636--18904666	16	1.9	16	93	0	53	22	32	6	38	1.80
18905747--18905867	41	3.0	41	87	6	174	34	11	29	23	1.90
18908178--18908227	26	1.9	26	87	0	73	38	14	8	40	1.75
18908190--18908250	26	2.4	25	78	10	61	37	11	8	42	1.71
18915024--18915185	43	3.8	43	84	0	216	28	29	19	23	1.98
18915018--18915205	86	2.2	86	79	1	216	31	27	18	22	1.97
18921382--18921408	14	1.9	14	100	0	54	22	37	14	25	1.93
18922849--18922919	27	2.6	27	86	0	97	15	35	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18924744--18924842	38	2.6	37	84	4	126	37	2	10	50	1.48
18926091--18926139	15	3.3	15	69	25	50	16	26	10	46	1.78
18926086--18926146	29	2.1	29	96	0	113	18	27	9	44	1.81
18926098--18926159	29	2.1	29	82	5	72	24	22	11	41	1.86
18930283--18930374	42	2.2	42	90	0	139	29	5	13	52	1.62
18936795--18936842	24	2.0	24	95	0	87	39	4	4	52	1.40
18939278--18939303	12	2.2	12	100	0	52	0	42	0	57	0.98
18967343--18967383	20	2.0	20	85	9	55	48	9	0	41	1.36
18968492--18968523	15	2.1	15	94	0	55	68	9	6	15	1.36
18973347--18973401	27	2.0	27	85	0	74	21	23	3	50	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85