genome.fa.s5.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  74  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25635795--25636082	146	2.0	143	87	2	414	45	11	10	32	1.75
25636234--25636403	91	1.9	91	87	7	256	34	21	12	30	1.91
25636462--25636813	9	37.0	9	65	20	71	61	4	3	30	1.31
25636462--25636550	20	4.7	20	78	8	71	67	2	4	25	1.21
25636503--25636554	19	2.9	17	78	13	59	65	0	5	28	1.16
25636695--25636740	20	2.2	22	84	7	60	60	13	0	26	1.32
25636714--25636814	30	3.6	27	77	13	98	63	4	0	30	1.22
25636728--25636805	19	4.3	18	72	16	54	62	3	1	32	1.21
25637245--25637278	16	2.2	16	89	5	52	82	0	0	17	0.67
25637444--25637506	19	3.2	20	80	6	67	28	1	4	65	1.22
25637393--25637479	35	2.4	36	77	7	88	27	1	5	65	1.22
25637444--25637555	10	11.4	9	68	24	50	32	1	5	60	1.29
25637444--25637536	29	3.2	28	75	13	80	31	1	5	62	1.25
25637597--25637648	20	2.8	18	75	11	50	61	11	0	26	1.30
25639321--25639500	89	2.0	90	97	1	344	28	18	10	42	1.83
25654085--25654345	132	2.0	129	80	3	290	23	15	15	45	1.83
25664032--25664237	39	5.3	38	90	3	268	32	14	21	32	1.93
25670923--25670978	19	2.9	19	80	15	53	41	12	5	41	1.66
25687290--25687335	18	2.6	18	82	6	58	45	0	2	52	1.13
25687996--25688039	22	2.0	21	82	4	52	40	0	2	56	1.11
25691765--25691805	14	2.9	14	85	3	55	39	0	4	56	1.21
25697838--25697872	17	2.1	17	89	10	54	42	0	34	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25697937--25698084	69	2.1	69	86	2	199	18	14	30	36	1.91
25703039--25703080	18	2.4	18	88	4	59	16	26	11	45	1.82
25703882--25703970	28	3.0	30	80	8	119	26	20	25	26	1.99
25704075--25704151	26	3.0	26	90	0	118	42	24	16	15	1.87
25704314--25704520	27	7.7	27	74	13	124	20	18	19	41	1.91
25704329--25704520	54	3.6	55	77	9	191	19	19	18	42	1.89
25704328--25704512	81	2.3	82	78	8	191	19	19	17	43	1.89
25711163--25711205	9	4.8	9	82	0	50	13	0	4	81	0.84
25725450--25725483	17	2.0	17	88	11	52	67	5	0	26	1.13
25730821--25730854	17	2.0	17	88	11	52	67	5	0	26	1.13
25748438--25748488	23	2.2	23	89	0	75	43	21	7	27	1.80
25751456--25751624	50	3.3	50	82	12	182	27	17	28	26	1.98
25756275--25756312	19	2.0	19	85	10	51	21	44	0	34	1.52
25760960--25761005	21	2.1	20	84	15	56	19	30	0	50	1.48
25773744--25773787	20	2.2	20	87	0	61	54	6	9	29	1.58
25788516--25789651	132	8.6	132	93	0	1882	30	20	24	24	1.99
25791852--25791988	71	2.0	69	92	5	231	27	12	16	43	1.84
25793706--25793780	4	19.0	4	97	2	143	25	0	25	49	1.51
25802649--25802715	34	1.9	35	87	3	100	44	14	8	31	1.76
25804866--25804909	20	2.2	20	84	8	54	56	6	2	34	1.38
25818157--25818225	34	2.0	34	100	0	138	30	14	17	37	1.90
25830209--25830293	9	9.4	9	74	5	73	42	21	9	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25830225--25830293	27	2.6	27	88	4	95	40	23	10	26	1.86
25830333--25830451	6	19.8	6	100	0	238	16	0	16	66	1.26
25830317--25830464	18	7.9	20	94	3	176	18	1	14	64	1.35
25830492--25830535	18	2.4	18	88	0	61	13	2	43	40	1.57
25830698--25830740	18	2.4	18	88	0	68	18	18	20	41	1.90
25833792--25833840	20	2.5	20	81	15	66	12	24	6	57	1.58
25834043--25834188	50	2.9	50	82	4	186	21	29	23	25	1.99
25836956--25837034	36	2.2	36	84	2	97	36	25	6	31	1.81
25837994--25838027	18	1.9	18	88	5	52	52	11	23	11	1.70
25841685--25841756	36	2.0	35	82	12	85	37	23	8	30	1.84
25842716--25842749	18	1.9	18	88	5	52	52	11	23	11	1.70
25845939--25845966	12	2.3	12	100	0	56	42	7	7	42	1.59
25846360--25846431	36	2.0	35	82	12	85	37	23	8	30	1.84
25847395--25847428	18	1.9	18	88	5	52	52	8	23	14	1.69
25848123--25848175	18	2.9	18	80	2	61	41	45	1	11	1.51
25850769--25850932	41	4.0	41	86	0	211	20	28	16	34	1.94
25859825--25859911	9	9.7	9	83	5	104	22	6	21	48	1.74
25864194--25864271	39	2.0	41	85	14	110	50	6	2	41	1.42
25864191--25864261	20	3.6	19	81	14	83	56	7	1	35	1.35
25864406--25864483	39	2.0	41	85	14	110	50	6	2	41	1.42
25864403--25864473	20	3.6	19	81	14	83	56	7	1	35	1.35
25864149--25865354	212	5.7	212	99	0	2378	46	11	6	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25864618--25864695	39	2.0	41	85	14	110	50	6	2	41	1.42
25864615--25864685	20	3.6	19	81	14	83	56	7	1	35	1.35
25864830--25864907	39	2.0	41	85	14	110	50	6	2	41	1.42
25864827--25864897	20	3.6	19	81	14	83	56	7	1	35	1.35
25865042--25865119	39	2.0	41	85	14	110	50	6	2	41	1.42
25865039--25865109	20	3.6	19	81	14	83	56	7	1	35	1.35
25865254--25865331	39	2.0	41	85	14	110	50	6	2	41	1.42
25865251--25865321	20	3.6	19	81	14	83	56	7	1	35	1.35
25868159--25868217	29	2.1	28	87	3	82	50	3	0	45	1.18
25868225--25868265	19	2.1	20	86	4	57	41	0	0	58	0.98
25869400--25869472	34	2.1	34	82	0	83	26	10	12	50	1.72
25871476--25871515	18	2.3	18	82	4	55	60	5	17	17	1.54
25874313--25874375	29	2.2	28	82	5	72	30	14	14	41	1.85
25875415--25875452	19	2.0	19	94	0	67	31	28	21	18	1.97
25876608--25876898	29	10.1	29	86	3	381	31	1	23	43	1.61
25877258--25877291	7	4.9	7	100	0	68	58	11	0	29	1.33
25878017--25878050	15	2.3	15	90	5	52	67	5	0	26	1.13
25878235--25878287	22	2.4	23	81	6	65	35	0	30	33	1.58
25878292--25878347	22	2.5	22	94	2	94	42	0	28	28	1.56
25878551--25878606	29	2.0	29	85	3	78	42	14	12	30	1.82
25880968--25880997	15	1.9	16	93	6	53	50	0	33	16	1.46
25881879--25881919	14	2.8	15	78	14	50	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25884305--25884361	20	2.8	20	86	0	87	50	1	3	43	1.29
25884305--25884368	20	3.3	19	84	6	83	54	1	3	40	1.25
25884369--25884428	25	2.3	26	82	5	68	66	3	1	28	1.17
25892456--25892492	2	18.5	2	94	0	65	45	0	2	51	1.15
25892724--25892775	20	2.6	21	78	6	54	36	5	5	51	1.50
25893197--25893254	20	2.7	21	84	7	64	36	0	3	60	1.14
25897642--25897678	2	18.5	2	94	0	65	45	0	2	51	1.15
25897673--25897871	98	2.0	99	98	1	382	33	17	23	26	1.96
25898008--25898059	20	2.6	21	78	6	54	36	5	5	51	1.50
25898481--25898538	20	2.7	21	84	7	64	36	0	3	60	1.14
25899885--25900100	105	2.0	106	97	0	407	30	10	14	44	1.79
25901116--25901141	2	13.0	2	100	0	52	50	0	0	50	1.00
25904329--25904366	18	2.1	18	95	0	67	2	15	28	52	1.56
25907396--25907485	46	2.0	47	83	14	118	40	2	3	54	1.29
25913281--25913315	15	2.5	13	90	9	52	17	0	8	74	1.06
25913299--25913384	22	3.6	22	79	16	84	18	5	8	67	1.37
25914655--25914683	13	2.2	13	100	0	58	17	6	37	37	1.76
25915632--25915672	19	2.2	19	86	4	57	9	0	12	78	0.98
25915846--25915892	20	2.3	20	82	7	51	38	6	6	48	1.54
25916944--25917010	34	1.9	35	87	3	100	31	8	14	44	1.76
25918763--25918798	2	18.5	2	94	5	65	50	0	0	50	1.00
25933688--25933732	22	2.1	21	87	4	63	66	4	0	28	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25939668--25939842	66	2.5	66	84	10	208	47	13	25	13	1.79
25940504--25940539	14	2.6	14	95	0	63	44	30	11	13	1.79
25941079--25941935	45	19.0	45	85	0	1129	29	16	24	30	1.96
25942462--25943495	45	23.4	45	84	4	1302	28	16	25	30	1.96
25943090--25943164	35	2.1	35	92	0	123	25	20	25	29	1.99
25943351--25943424	35	2.1	35	87	5	105	25	20	25	28	1.99
25943609--25943783	44	4.0	44	65	11	106	30	19	24	26	1.98
25943485--25943803	132	2.4	132	87	2	444	29	19	25	26	1.98
25944553--25944597	23	2.0	23	81	0	54	22	0	15	62	1.33
25944886--25944961	36	2.1	36	80	11	84	39	7	1	51	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85