genome.fa.s5.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Length:  30015117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   

This is table  44  of  85  ( 10117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14861532--14861579	22	2.2	22	88	7	71	35	8	2	54	1.42
14862148--14862283	42	3.2	42	87	2	184	51	17	19	11	1.75
14864044--14864071	12	2.3	12	100	0	56	42	7	7	42	1.59
14866952--14866976	8	3.1	8	100	0	50	48	28	0	24	1.52
14872230--14872293	33	1.9	33	87	6	94	43	21	3	31	1.68
14886863--14886968	45	2.3	46	81	1	124	32	20	21	25	1.98
14889463--14889488	4	6.5	4	100	0	52	73	0	0	26	0.84
14889529--14889590	3	21.3	3	80	6	74	29	0	4	66	1.12
14890240--14890296	21	2.7	21	86	0	69	15	28	15	40	1.88
14904494--14904541	22	2.3	21	85	7	62	27	4	6	62	1.38
14906682--14906742	10	6.2	10	75	11	63	62	9	16	11	1.54
14906677--14906734	29	2.0	30	86	3	82	63	12	13	10	1.51
14910561--14910666	21	5.2	21	68	13	60	21	38	17	21	1.93
14925187--14925230	22	2.0	21	82	13	52	38	0	20	40	1.53
14927473--14927506	16	2.2	16	89	5	52	29	8	14	47	1.75
14930045--14930085	22	1.9	21	85	5	55	48	4	0	46	1.23
14931461--14931533	36	2.0	36	94	0	128	24	19	17	38	1.93
14932249--14932298	18	2.5	20	87	9	68	72	2	20	6	1.16
14935651--14935683	4	8.5	4	93	6	59	48	0	0	51	1.00
14941060--14941088	14	2.1	14	100	0	58	41	6	24	27	1.80
14942359--14942386	12	2.3	12	100	0	56	50	7	17	25	1.72
14951513--14951550	13	2.9	13	88	7	51	50	13	23	13	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14963321--14963382	26	2.4	26	84	10	90	38	12	14	33	1.84
14965339--14965442	51	2.0	51	96	0	190	22	20	24	33	1.97
14966056--14966246	51	3.8	52	73	11	173	26	15	26	31	1.96
14966064--14966248	101	1.8	101	84	5	257	25	16	25	31	1.96
14966451--14966523	37	1.9	38	88	2	112	43	4	21	30	1.71
14973199--14973248	24	2.1	24	81	7	57	38	6	6	50	1.52
14974878--14975004	41	3.1	40	82	5	146	21	17	30	30	1.96
14974929--14975206	103	2.7	103	88	0	405	23	17	26	32	1.97
14975560--14975600	21	2.0	21	85	0	55	21	2	21	53	1.57
14975609--14975648	7	5.7	7	93	0	62	5	0	37	57	1.21
14976927--14977005	31	2.6	31	81	2	106	21	13	20	44	1.86
14978704--14978845	43	3.3	43	84	3	180	22	14	28	33	1.94
14979175--14979276	39	2.6	40	75	10	111	32	23	16	27	1.96
14981854--14982198	174	2.0	174	98	0	663	15	17	36	29	1.91
14982546--14983028	82	5.9	82	97	0	869	22	20	24	31	1.98
14983215--14983720	44	11.5	45	77	5	462	31	26	15	26	1.96
14983221--14983717	132	3.8	132	93	0	832	31	26	15	26	1.96
14984737--14984801	6	10.0	6	79	17	60	4	13	0	81	0.84
14984738--14984804	20	3.3	20	82	14	84	4	13	0	82	0.82
14984738--14984794	7	8.4	7	84	9	66	3	12	0	84	0.75
14984738--14984803	13	5.0	13	78	14	64	4	12	0	83	0.79
14985230--14985273	12	3.5	13	84	9	65	0	9	9	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14986560--14986684	62	2.0	62	92	3	207	32	5	20	40	1.76
14988193--14988403	107	2.0	107	91	0	341	30	18	19	31	1.96
14988680--14988739	26	2.3	26	80	8	68	56	3	10	30	1.48
14990382--14990462	14	5.6	14	65	23	51	14	18	53	13	1.73
14990373--14990491	59	2.0	59	88	6	179	18	20	49	11	1.78
14998215--14998254	20	1.9	20	85	10	53	67	10	10	12	1.42
15001045--15001208	57	2.9	58	87	3	208	40	14	20	25	1.90
15001497--15001551	23	2.4	23	87	0	74	25	20	16	38	1.92
15001502--15001666	58	2.9	57	88	2	233	24	19	15	40	1.91
15010677--15010764	44	2.0	44	100	0	176	29	27	25	18	1.98
15015118--15015271	76	2.0	76	100	0	308	55	9	4	31	1.51
15016827--15016851	13	1.9	13	100	0	50	40	0	0	60	0.97
15016812--15016872	30	1.9	33	87	9	92	47	0	3	49	1.18
15017416--15017522	40	2.7	40	85	7	146	32	20	24	22	1.98
15017579--15017816	41	5.8	41	89	0	359	21	19	29	29	1.97
15018097--15018150	22	2.5	21	78	3	54	18	0	31	50	1.48
15018117--15018150	14	2.4	14	90	0	50	14	0	35	50	1.44
15018042--15018227	75	2.5	75	92	0	300	20	2	29	47	1.64
15018233--15018326	15	6.5	15	71	18	56	20	0	31	47	1.50
15018172--15018327	7	21.7	7	71	12	66	20	0	32	47	1.51
15022777--15022867	43	2.1	43	86	6	123	34	9	9	46	1.70
15022894--15023069	87	2.0	87	98	0	343	25	12	7	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15023335--15023619	43	6.7	43	84	1	351	26	18	28	27	1.98
15023335--15023619	85	3.4	85	85	1	367	26	18	28	27	1.98
15026939--15027147	52	3.8	53	73	13	145	48	12	11	27	1.75
15029852--15029909	20	2.9	20	78	14	66	12	27	22	37	1.89
15031290--15031328	21	1.9	20	89	5	60	30	2	10	56	1.46
15034811--15034910	39	2.6	39	93	0	164	48	11	10	31	1.71
15042479--15043011	125	4.3	124	84	1	717	29	17	21	30	1.97
15042482--15043011	250	2.1	249	89	1	801	30	17	21	30	1.97
15046117--15046389	22	12.8	22	76	13	232	18	0	30	51	1.46
15046117--15046389	44	6.4	44	80	9	282	18	0	30	51	1.46
15046145--15046381	125	1.9	124	90	0	375	18	0	30	51	1.46
15046263--15046339	15	5.2	15	74	12	52	20	0	24	54	1.45
15046645--15046690	21	2.2	21	84	7	58	10	21	32	34	1.88
15046931--15046970	18	2.2	18	86	8	55	45	7	27	20	1.78
15048786--15048811	10	2.6	10	100	0	52	53	0	0	46	1.00
15048868--15048934	11	6.0	11	77	16	75	44	0	29	25	1.54
15048867--15048941	33	2.2	35	86	9	102	41	0	32	26	1.56
15048867--15048941	11	6.6	12	75	20	72	41	0	32	26	1.56
15049697--15049745	20	2.5	19	77	6	53	16	14	6	63	1.49
15051649--15051674	5	5.2	5	100	0	52	42	19	19	19	1.90
15053859--15053897	18	2.2	17	86	4	51	30	2	2	64	1.21
15054712--15054745	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15054742--15054789	20	2.4	21	76	13	57	22	2	8	66	1.29
15056285--15056316	7	4.6	7	96	0	55	25	0	12	62	1.30
15062040--15062980	125	7.5	125	98	0	1816	33	21	16	29	1.95
15063209--15063263	29	1.9	28	88	3	83	41	20	14	23	1.89
15064026--15064065	16	2.5	16	83	0	53	42	5	22	30	1.75
15067693--15072097	23	193.4	23	68	7	1123	40	24	5	30	1.77
15067687--15070925	182	17.8	182	89	1	4765	40	24	5	29	1.77
15067687--15072097	364	12.2	364	87	2	6196	40	24	5	29	1.77
15067687--15072097	546	8.2	546	87	3	6210	40	24	5	29	1.77
15069245--15069298	21	2.4	23	79	11	60	42	27	3	25	1.72
15070926--15071253	182	1.8	182	89	0	512	39	24	4	31	1.76
15071255--15072097	182	4.6	182	87	1	1195	39	24	5	30	1.78
15073620--15073646	13	2.1	13	100	0	54	29	22	18	29	1.97
15074261--15074352	40	2.3	40	84	3	114	39	25	21	14	1.91
15074362--15074581	114	1.9	113	86	4	309	25	22	25	27	2.00
15074550--15074655	41	2.6	41	89	0	158	20	24	23	31	1.98
15074476--15074774	156	1.9	153	87	3	429	22	23	25	29	1.99
15076188--15076663	243	2.0	243	92	0	801	30	16	19	33	1.94
15077067--15077108	19	2.2	19	86	0	57	28	45	2	23	1.66
15089261--15089418	23	7.0	23	73	9	119	40	24	3	31	1.71
15089249--15091017	46	39.4	46	69	8	536	40	24	4	30	1.75
15089477--15089564	23	3.9	22	73	5	77	43	20	3	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15089251--15089866	216	2.9	216	95	0	1081	41	24	3	30	1.71
15089693--15089780	23	3.9	22	73	5	77	43	20	3	32	1.69
15089907--15090147	23	10.6	23	70	5	103	43	24	4	26	1.73
15089687--15090822	182	6.2	181	88	2	1596	40	23	5	30	1.76
15090269--15090312	23	1.9	23	85	0	61	47	18	4	29	1.68
15090374--15090914	23	23.7	23	67	8	102	38	24	4	32	1.76
15089691--15090822	544	2.1	545	87	1	1640	40	23	5	30	1.76
15090564--15090707	69	2.1	69	80	7	159	36	25	5	32	1.79
15090601--15090913	69	4.5	70	71	13	166	39	23	3	33	1.71
15090787--15090928	23	6.2	23	78	4	153	38	23	3	33	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85