genome.fa.s7.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  21  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7053831--7053907	28	2.8	28	86	3	95	41	16	0	41	1.49
7066645--7066726	41	2.0	41	100	0	164	19	26	4	48	1.69
7070859--7070909	10	4.8	10	80	20	50	37	0	7	54	1.29
7075803--7075963	41	3.8	42	76	10	132	31	26	19	22	1.98
7078695--7078881	41	4.6	41	86	1	241	20	26	16	36	1.93
7078691--7078881	81	2.3	81	83	2	222	20	27	15	36	1.93
7085491--7085525	18	1.9	18	88	0	52	57	0	20	22	1.41
7093039--7093080	11	4.1	10	81	9	50	76	2	4	16	1.07
7093062--7093138	13	5.6	13	74	17	66	76	2	12	7	1.10
7099171--7099315	27	5.4	27	84	1	166	42	22	17	17	1.90
7099184--7099315	53	2.5	53	83	2	174	40	22	18	18	1.91
7106190--7106371	91	2.0	91	86	0	256	43	15	23	18	1.87
7107848--7109033	590	2.0	587	99	0	2327	29	11	20	37	1.88
7115228--7115416	29	6.6	29	75	7	145	36	11	28	23	1.90
7115280--7115454	87	2.0	87	88	0	260	36	11	29	23	1.90
7115311--7115502	29	6.6	29	76	8	158	36	11	29	22	1.90
7115282--7115502	87	2.5	87	83	4	259	37	11	28	23	1.89
7118042--7118068	12	2.2	12	100	0	54	62	0	0	37	0.95
7120678--7120783	45	2.4	45	88	0	158	25	19	14	40	1.89
7127768--7128081	45	7.0	45	99	0	619	26	21	15	35	1.94
7128593--7128696	44	2.4	43	74	6	102	30	19	24	25	1.98
7128817--7129021	46	4.5	46	92	0	329	33	27	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7129980--7130547	103	5.5	103	92	2	922	48	8	16	25	1.75
7130512--7130579	32	2.1	33	86	2	93	50	5	14	29	1.67
7130409--7130683	136	2.0	136	90	2	437	48	8	16	27	1.74
7130306--7130770	239	1.9	239	94	1	817	47	8	16	26	1.75
7130545--7130770	103	2.2	104	89	3	341	46	8	17	26	1.77
7131107--7131183	1	77.0	1	71	0	55	0	6	7	85	0.73
7131095--7131140	12	3.9	12	85	5	67	0	17	0	82	0.67
7131094--7131170	7	10.6	7	81	13	66	0	10	5	84	0.77
7131093--7131183	21	4.4	20	77	15	78	0	9	6	83	0.81
7131094--7131180	16	5.3	16	81	14	81	0	9	6	83	0.80
7131118--7131184	12	5.4	12	82	12	64	0	4	10	85	0.74
7131094--7131181	30	2.9	30	80	14	51	0	9	6	84	0.79
7131130--7131182	24	2.2	25	86	3	72	0	1	11	86	0.64
7133702--7133915	106	2.0	107	98	0	412	27	24	14	34	1.94
7138880--7138929	26	1.9	26	100	0	100	42	8	14	36	1.74
7139849--7139887	20	2.0	20	90	10	62	15	23	5	56	1.59
7140088--7140281	50	3.8	50	80	6	201	23	29	22	25	1.99
7147651--7147787	50	2.7	50	86	2	186	20	27	24	27	1.99
7174575--7174829	43	6.0	43	79	6	268	32	24	16	26	1.96
7175935--7175974	17	2.2	20	86	13	59	32	32	2	32	1.71
7177899--7178024	40	3.1	41	80	8	150	23	18	21	37	1.94
7178073--7178356	138	2.1	138	87	3	405	41	6	4	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7180238--7180279	10	4.3	10	78	6	50	28	11	23	35	1.91
7181909--7181951	18	2.5	17	82	14	52	72	0	11	16	1.13
7183349--7183386	19	2.0	20	89	5	60	63	7	0	28	1.23
7193049--7193083	18	1.9	18	88	11	54	22	20	0	57	1.41
7194042--7194082	16	2.5	17	92	4	66	14	9	12	63	1.52
7209301--7209404	52	2.1	49	85	5	136	47	11	11	29	1.75
7210416--7210463	19	2.5	19	93	3	78	31	10	6	52	1.60
7220620--7220673	20	2.7	20	82	0	63	24	16	18	40	1.90
7220620--7220693	30	2.5	30	82	8	89	21	17	18	41	1.90
7220620--7220684	20	3.2	20	78	8	62	23	18	16	41	1.90
7225998--7226051	20	2.7	20	82	0	63	24	20	18	37	1.94
7230560--7230584	13	1.9	13	100	0	50	48	4	16	32	1.64
7230602--7230651	25	2.0	25	96	0	91	44	30	12	14	1.81
7239975--7240116	41	3.5	41	91	0	223	23	19	22	34	1.96
7239979--7240161	82	2.2	82	81	1	188	24	18	24	33	1.97
7240549--7240684	70	1.9	69	81	8	159	30	8	16	43	1.79
7256507--7256545	2	19.5	2	100	0	78	48	0	51	0	1.00
7258495--7258539	22	2.0	22	83	8	56	40	8	0	51	1.33
7262779--7262817	20	2.0	20	94	0	69	48	0	2	48	1.15
7264133--7264226	46	2.0	46	95	0	170	29	27	8	34	1.87
7266451--7266552	34	3.2	34	65	30	98	26	17	13	42	1.87
7266453--7266574	60	2.0	60	100	0	244	24	16	14	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7266721--7267016	50	5.8	50	79	3	263	22	29	20	27	1.99
7266797--7267016	106	2.2	99	83	5	260	21	30	21	25	1.98
7268742--7268769	13	2.2	13	100	0	56	50	14	14	21	1.78
7274133--7274271	46	3.0	47	88	5	214	30	25	8	35	1.86
7283358--7283396	21	1.9	20	89	5	60	41	5	10	43	1.61
7283433--7283481	24	2.0	24	100	0	98	48	4	16	30	1.64
7285321--7285369	18	2.6	19	84	9	57	51	4	2	42	1.32
7285731--7285770	21	1.9	21	94	0	71	52	12	12	22	1.72
7298003--7298051	18	2.6	19	84	9	57	51	4	2	42	1.32
7298413--7298452	21	1.9	21	94	0	71	52	12	12	22	1.72
7310588--7310723	51	2.8	49	82	9	179	24	16	27	31	1.96
7310726--7310817	45	2.0	45	89	0	139	25	17	25	32	1.97
7316562--7316594	17	2.0	17	88	5	50	51	6	3	39	1.42
7320694--7320794	46	2.2	46	82	1	114	32	23	15	27	1.95
7321635--7321698	26	2.5	26	89	0	92	21	26	25	26	2.00
7339525--7339558	16	2.2	15	89	5	50	55	0	0	44	0.99
7339624--7339682	30	2.0	30	83	3	75	49	13	5	32	1.64
7353126--7353156	16	2.0	15	93	6	53	32	0	45	22	1.53
7360286--7360347	28	2.2	29	80	8	74	16	20	12	50	1.78
7368426--7368476	20	2.5	20	83	0	66	39	19	31	9	1.84
7368461--7368498	20	1.9	20	88	0	58	39	26	26	7	1.83
7370700--7370752	20	2.7	20	81	0	61	37	24	28	9	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7370990--7371019	14	2.1	14	93	0	51	50	13	0	36	1.42
7372301--7372416	61	1.9	61	82	7	146	28	24	12	34	1.92
7372412--7372479	31	2.2	31	81	0	82	30	29	19	20	1.97
7376344--7376415	20	3.6	20	78	0	81	22	25	1	51	1.56
7378793--7378925	51	2.6	51	83	3	171	29	27	18	25	1.98
7380246--7380283	6	6.3	6	100	0	76	0	31	0	68	0.90
7383492--7383554	33	1.9	33	90	0	99	20	26	7	44	1.79
7392461--7392546	42	2.0	42	84	4	111	31	15	22	31	1.94
7400310--7400339	12	2.5	12	94	0	51	23	13	26	36	1.92
7414927--7414971	23	1.9	24	90	4	74	66	11	13	8	1.44
7416338--7416408	29	2.4	29	90	4	108	57	8	32	1	1.37
7416635--7416710	7	10.3	7	72	19	57	46	0	1	52	1.08
7416640--7416709	38	1.9	35	88	8	104	45	0	1	52	1.09
7426374--7426447	29	2.5	29	84	2	94	40	4	24	31	1.74
7427817--7427857	22	1.9	22	85	5	57	56	4	12	26	1.56
7428047--7428131	21	4.2	21	72	17	65	31	3	5	58	1.39
7429171--7429242	31	2.3	31	95	2	126	38	0	4	56	1.18
7434036--7434109	29	2.5	29	84	2	94	40	4	24	31	1.74
7434212--7434661	229	2.0	229	100	0	900	26	22	6	44	1.77
7435708--7435748	22	1.9	22	85	5	57	56	4	12	26	1.56
7435938--7436022	21	4.2	21	72	17	65	31	3	5	58	1.39
7437063--7437133	31	2.3	31	95	2	124	39	0	4	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7440893--7440984	41	2.2	41	84	3	123	29	28	16	26	1.97
7442821--7443037	43	5.1	43	80	4	242	33	27	15	23	1.95
7442822--7443033	85	2.5	86	84	6	268	33	26	15	24	1.95
7442821--7443055	128	1.8	128	80	1	283	34	25	15	24	1.94
7447153--7447301	7	21.3	7	69	5	68	46	30	1	20	1.59
7447177--7447329	14	11.1	13	69	12	58	45	31	1	21	1.60
7447153--7447293	21	6.8	20	67	11	77	47	30	1	20	1.59
7447498--7447544	21	2.2	21	84	0	58	48	38	0	12	1.41
7447506--7447556	14	3.6	14	74	10	50	49	35	0	15	1.45
7447649--7447745	40	2.4	40	85	0	140	25	20	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79