genome.fa.s7.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  76  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25417517--25417565	6	8.2	6	97	0	71	26	0	57	16	1.40
25417536--25417576	18	2.3	18	86	0	55	36	0	48	14	1.44
25430214--25430279	4	17.8	4	93	3	88	0	24	0	75	0.80
25435643--25435686	23	1.9	23	85	0	61	56	0	0	43	0.99
25435662--25435697	13	2.6	15	87	12	51	61	0	0	38	0.96
25442858--25442900	12	3.6	11	90	6	59	20	2	2	74	1.04
25444320--25444908	294	2.0	294	97	1	1110	28	21	17	32	1.96
25452087--25452112	5	5.2	5	100	0	52	0	19	0	80	0.71
25456033--25456059	3	9.0	3	100	0	54	33	0	0	66	0.92
25456450--25456509	3	20.3	3	96	3	113	33	0	0	66	0.92
25460782--25460834	17	3.3	16	75	24	58	47	7	1	43	1.42
25464017--25464045	5	5.8	5	100	0	58	0	0	20	79	0.74
25482620--25482671	27	1.9	28	84	7	72	34	7	0	57	1.27
25487048--25487112	33	2.0	33	90	0	103	24	3	18	53	1.58
25500413--25500475	25	2.5	25	84	7	74	3	26	3	66	1.22
25502034--25502096	29	2.1	30	85	8	85	58	9	3	28	1.45
25502527--25502580	21	2.7	21	78	16	69	37	1	0	61	1.07
25503679--25503975	156	1.9	155	90	2	452	18	35	16	29	1.93
25504848--25504902	22	2.5	22	85	5	67	21	12	21	43	1.86
25505073--25505219	52	2.9	52	89	5	216	23	8	22	45	1.79
25506001--25510586	187	24.5	187	99	0	9127	35	9	13	41	1.77
25520525--25520647	57	2.1	58	89	5	187	17	23	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25523887--25523944	26	2.2	26	93	0	98	43	3	13	39	1.61
25524318--25524342	12	2.1	12	100	0	50	60	8	8	24	1.52
25526724--25526763	19	2.0	21	85	9	57	35	5	5	55	1.44
25526967--25527096	41	3.1	41	81	10	158	33	29	17	20	1.95
25526967--25527119	83	1.9	82	82	9	195	35	26	16	20	1.94
25527252--25527328	40	2.0	40	87	7	113	22	18	19	40	1.92
25530996--25531026	11	2.8	11	90	0	53	32	0	0	67	0.91
25531145--25531207	30	2.1	30	90	0	99	58	14	1	25	1.45
25533875--25533900	6	4.3	6	100	0	52	19	0	34	46	1.50
25534492--25534556	13	5.1	13	77	7	62	30	7	23	38	1.83
25535631--25535693	23	2.8	22	78	4	63	39	0	6	53	1.26
25535649--25535695	23	2.0	23	87	0	67	42	0	6	51	1.27
25535751--25535977	83	2.7	82	84	6	255	34	6	11	47	1.65
25543602--25543655	27	2.0	28	88	3	83	27	7	27	37	1.84
25545435--25545465	8	3.9	8	95	0	53	22	0	3	74	0.96
25556078--25556107	2	15.0	2	100	0	60	50	0	0	50	1.00
25560976--25561006	12	2.6	12	100	0	62	22	0	6	70	1.09
25569953--25570023	19	3.8	18	72	10	63	38	1	1	59	1.15
25569958--25570022	27	2.3	29	82	12	82	40	1	1	56	1.18
25572945--25573003	24	2.4	25	83	11	77	47	0	6	45	1.29
25574797--25575119	172	1.9	164	80	8	373	33	19	14	32	1.92
25577938--25577968	15	2.0	16	93	6	55	35	19	6	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25585737--25585764	4	7.0	4	100	0	56	50	0	0	50	1.00
25591140--25591250	31	3.7	29	77	8	96	39	12	13	34	1.83
25602832--25602881	20	2.5	20	96	0	91	46	36	8	10	1.67
25603298--25603323	2	13.0	2	100	0	52	50	0	0	50	1.00
25606085--25606116	4	8.0	4	100	0	64	75	25	0	0	0.81
25607999--25608025	4	6.8	4	100	0	54	51	25	0	22	1.48
25619434--25619615	21	8.7	21	77	2	96	22	8	44	24	1.80
25619434--25619599	42	4.0	42	77	6	147	22	7	44	25	1.78
25619434--25619639	42	4.9	42	75	7	114	22	8	43	25	1.81
25619602--25619732	63	2.1	63	82	2	156	23	9	39	26	1.86
25619608--25619729	42	2.9	42	78	4	138	22	10	39	27	1.87
25619581--25619732	21	7.2	21	78	4	119	23	10	39	26	1.87
25619779--25619918	42	3.3	43	87	2	169	25	15	40	18	1.90
25619824--25619921	21	4.7	21	84	0	124	28	17	38	15	1.90
25619841--25619945	21	5.0	21	84	0	120	28	15	40	16	1.88
25619824--25619945	42	2.9	42	87	2	138	27	16	39	16	1.90
25628891--25628974	29	2.9	29	76	3	80	63	4	4	27	1.35
25628905--25628969	28	2.3	30	76	17	75	66	4	3	26	1.26
25631019--25631050	1	32.0	1	100	0	64	0	0	100	0	0.00
25639600--25639668	31	2.2	31	87	5	95	44	8	18	27	1.79
25640481--25640523	18	2.4	18	88	7	61	48	0	0	51	1.00
25644024--25644057	2	17.0	2	100	0	68	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25644428--25644457	4	7.5	4	100	0	60	26	23	0	50	1.50
25645070--25645110	5	8.0	5	86	2	55	75	21	2	0	0.92
25651273--25651335	13	4.5	13	76	18	56	61	3	3	31	1.27
25652976--25653028	28	2.0	26	85	7	70	33	0	1	64	1.05
25652991--25653031	21	1.9	21	85	5	55	39	0	2	58	1.11
25656328--25656381	26	2.1	26	89	0	81	37	7	1	53	1.40
25656392--25656421	15	1.9	15	93	6	51	66	20	6	6	1.38
25656604--25656638	18	1.9	18	88	0	52	40	11	0	48	1.39
25657553--25657586	17	2.0	17	94	0	59	5	5	20	67	1.33
25657595--25657656	28	2.3	28	91	5	101	46	0	6	46	1.28
25659573--25659612	20	2.0	20	90	5	62	67	0	0	32	0.91
25661684--25661722	16	2.4	16	100	0	78	46	0	12	41	1.42
25661841--25661875	18	2.0	17	88	5	52	45	0	0	54	0.99
25667508--25667569	18	3.3	20	77	18	64	41	1	3	53	1.27
25667510--25667569	19	3.3	18	76	6	59	41	1	3	53	1.27
25669438--25669476	11	3.6	11	83	16	55	25	0	5	69	1.09
25669432--25669482	10	5.0	10	78	19	52	27	0	5	66	1.14
25669432--25669483	20	2.5	21	84	9	72	28	0	5	65	1.16
25673601--25674253	250	2.7	246	86	4	898	28	17	11	41	1.84
25683933--25683964	17	1.9	16	93	6	55	87	3	9	0	0.64
25683933--25683964	8	3.9	8	95	4	55	87	3	9	0	0.64
25684125--25684217	29	3.1	29	65	14	71	31	10	17	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25685586--25685625	16	2.5	17	84	15	50	42	10	20	27	1.83
25688855--25688885	15	2.1	15	93	0	53	41	19	6	32	1.77
25690355--25690415	27	2.4	25	83	8	79	39	11	1	47	1.50
25690785--25690822	20	1.9	20	88	0	58	44	7	7	39	1.63
25691927--25691989	19	3.3	19	68	0	63	46	3	9	41	1.52
25692463--25692525	27	2.3	27	78	10	83	14	31	22	31	1.93
25692541--25692604	27	2.4	27	86	0	83	45	1	14	39	1.54
25693625--25693668	22	2.0	22	100	0	88	50	18	9	22	1.75
25695558--25695619	27	2.3	27	81	10	90	14	37	19	29	1.91
25695620--25695653	17	1.9	18	94	5	61	5	5	17	70	1.28
25695648--25695702	28	2.0	28	85	3	76	34	0	9	56	1.31
25696356--25696465	57	1.9	56	83	9	141	52	12	14	20	1.73
25699408--25699445	15	2.5	15	83	12	51	44	0	2	52	1.14
25699906--25699984	31	2.5	31	78	6	97	41	21	11	25	1.86
25705004--25705069	32	2.1	32	88	5	98	19	18	24	37	1.93
25715789--25715824	2	18.0	2	88	0	54	47	2	2	47	1.31
25723374--25723430	28	2.0	28	100	0	114	42	14	7	36	1.72
25729687--25729830	72	2.0	72	95	0	261	38	25	16	20	1.93
25730363--25730750	192	2.0	193	96	0	724	39	17	15	27	1.90
25733055--25733089	3	11.3	3	93	6	61	37	0	0	62	0.95
25735219--25735283	32	2.1	31	88	5	96	60	13	3	23	1.48
25741152--25741213	27	2.3	27	88	0	97	30	20	32	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25743787--25743864	39	1.9	42	82	10	99	48	2	5	43	1.38
25744856--25744908	24	2.2	24	82	0	61	52	9	5	32	1.57
25745522--25745563	13	3.2	13	83	12	52	23	7	28	40	1.81
25750747--25750822	9	8.4	9	92	0	125	44	22	7	25	1.79
25752357--25752398	19	2.2	20	86	4	59	35	0	2	61	1.09
25754787--25755438	329	2.0	329	99	0	1286	33	13	8	43	1.75
25758579--25758657	39	2.0	39	95	0	140	32	11	18	36	1.87
25760647--25760693	24	2.0	22	84	8	58	38	4	0	57	1.18
25760549--25760765	99	2.2	100	95	1	393	35	11	5	47	1.62
25763596--25763626	4	7.8	4	100	0	62	25	0	25	48	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79