genome.fa.s7.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  8  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2809463--2809531	24	2.9	23	80	8	75	40	1	40	17	1.58
2809530--2809560	6	5.2	6	92	0	53	51	12	35	0	1.40
2811905--2811984	31	2.6	31	88	4	117	18	26	8	46	1.78
2819023--2819066	21	2.1	21	87	4	63	36	15	13	34	1.87
2820066--2820117	26	2.0	26	81	7	61	23	15	32	28	1.95
2821363--2821740	194	1.9	194	82	3	465	23	26	19	30	1.98
2822976--2823022	17	2.8	17	83	0	58	61	0	0	38	0.96
2828498--2828528	15	2.1	15	93	0	53	19	22	35	22	1.96
2832947--2832976	5	6.2	5	92	7	53	0	63	0	36	0.95
2834669--2834700	16	2.0	16	93	0	55	40	0	9	50	1.35
2835947--2835986	21	1.9	21	90	10	64	17	27	22	32	1.96
2844692--2844716	12	2.1	12	100	0	50	48	16	8	28	1.74
2846895--2846932	10	3.7	10	86	6	58	5	10	2	81	0.94
2846895--2846933	11	3.6	11	79	6	53	5	10	2	82	0.93
2847286--2847333	5	9.0	5	79	20	53	77	0	6	16	0.97
2850028--2850060	17	1.9	17	88	11	50	48	36	6	9	1.60
2851110--2851181	28	2.5	29	74	19	71	34	5	5	54	1.47
2854837--2854865	15	1.9	15	100	0	58	34	34	20	10	1.87
2859961--2859986	9	2.9	9	100	0	52	11	0	7	80	0.89
2861348--2861385	20	1.9	20	88	0	58	36	7	0	55	1.29
2861920--2861983	16	4.0	16	80	12	69	42	0	1	56	1.09
2866359--2866402	23	1.9	23	100	0	88	27	11	13	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2869896--2869926	7	4.3	7	95	4	53	54	0	3	41	1.16
2878435--2878467	3	11.0	3	93	0	57	3	33	0	63	1.10
2881470--2881533	24	2.7	24	92	0	110	12	29	21	35	1.91
2884141--2884209	19	3.5	19	84	4	84	53	5	0	40	1.25
2884159--2884223	19	3.2	19	82	8	76	52	4	0	43	1.22
2884141--2884223	39	2.0	41	84	11	109	51	4	0	43	1.23
2884127--2884251	19	6.5	19	71	14	62	56	4	0	40	1.18
2884122--2884245	20	6.4	20	71	14	55	55	5	0	38	1.23
2884192--2884272	35	2.3	36	85	4	103	58	2	2	37	1.25
2885021--2885078	27	2.1	27	84	6	73	24	5	3	67	1.27
2886282--2886324	19	2.3	19	77	22	54	55	2	0	41	1.12
2890673--2890802	46	2.8	46	82	0	161	30	24	20	25	1.99
2893745--2893797	21	2.4	23	81	12	74	15	24	5	54	1.62
2896873--2896903	16	1.9	16	93	0	53	45	19	0	35	1.51
2901236--2901268	3	11.0	3	100	0	66	0	33	66	0	0.92
2902871--2902907	9	4.1	9	85	0	56	45	10	10	32	1.74
2902927--2902967	21	2.0	22	85	9	59	24	19	0	56	1.42
2906039--2906099	31	1.9	33	83	6	81	52	4	3	39	1.39
2908413--2908446	15	2.3	15	89	0	50	82	2	0	14	0.79
2910060--2910163	23	4.5	23	73	15	106	42	16	18	23	1.89
2921095--2921397	106	2.9	106	86	0	417	32	18	18	31	1.95
2923469--2923529	9	6.8	9	96	0	95	39	27	9	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2923469--2923554	27	3.1	27	83	8	86	41	25	11	20	1.86
2924186--2924533	178	2.0	174	91	2	570	51	8	8	32	1.61
2926098--2926835	45	17.3	45	86	5	723	31	23	16	29	1.96
2926196--2926735	38	13.1	38	86	6	450	32	23	15	27	1.95
2926098--2926835	90	8.7	88	87	7	835	31	23	16	29	1.96
2926452--2926771	76	4.0	76	92	5	478	34	22	15	27	1.94
2927337--2927380	23	2.0	21	86	8	61	36	6	2	54	1.40
2927337--2927390	23	2.3	24	81	15	60	38	5	1	53	1.35
2928760--2928810	26	2.0	26	84	0	66	47	1	0	50	1.12
2929382--2929424	22	2.0	22	85	0	59	27	0	18	53	1.45
2932301--2932411	19	5.8	19	88	0	168	37	16	9	36	1.82
2935649--2935675	14	1.9	14	100	0	54	70	0	0	29	0.88
2937863--2937894	16	2.0	16	100	0	64	43	0	6	50	1.27
2940923--2941424	45	11.2	45	83	3	580	30	22	15	31	1.95
2940923--2941424	90	5.6	90	86	0	671	30	22	15	31	1.95
2940923--2941407	135	3.6	135	88	0	682	30	22	15	30	1.95
2941933--2941976	23	2.0	21	86	8	61	36	6	2	54	1.40
2941933--2941986	23	2.3	24	81	15	60	38	5	1	53	1.35
2942170--2942215	24	1.9	24	82	8	58	50	4	4	41	1.42
2945404--2945446	19	2.3	19	87	0	59	27	0	4	67	1.10
2948847--2948877	3	10.3	3	100	0	62	67	0	0	32	0.91
2949531--2949588	9	6.4	9	87	0	80	41	24	8	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2949531--2949580	18	2.8	18	96	0	91	40	24	10	26	1.86
2949530--2949588	27	2.2	27	87	0	91	42	23	8	25	1.82
2949647--2949679	16	2.1	16	94	0	57	36	3	36	24	1.71
2950288--2950339	15	3.6	15	80	12	56	53	1	0	44	1.11
2950503--2950590	41	2.1	41	95	0	158	60	12	5	21	1.53
2952662--2952701	18	2.2	18	86	0	53	12	2	45	40	1.56
2954236--2954499	99	2.7	100	81	2	329	23	37	11	27	1.90
2957099--2957185	25	3.5	25	82	6	113	21	27	18	32	1.97
2962115--2962149	2	17.5	2	93	0	61	48	2	0	48	1.16
2964940--2964995	27	2.2	25	90	9	87	33	1	0	64	1.04
2964947--2965001	26	2.2	25	83	9	67	30	1	0	67	1.01
2964946--2965002	27	2.2	25	87	6	78	29	1	0	68	1.00
2968829--2968897	22	3.3	22	74	8	56	52	4	4	39	1.41
2973245--2973309	31	2.0	33	85	5	89	46	6	6	41	1.54
2983703--2983789	43	2.0	43	95	4	158	26	14	9	49	1.74
2986251--2986338	45	1.9	46	83	2	115	31	21	7	38	1.82
2987789--2987893	52	2.0	52	100	0	210	24	11	11	52	1.70
2990808--2990851	18	2.5	18	85	3	54	50	0	15	34	1.45
2991728--2991783	16	3.5	16	78	7	60	32	25	5	37	1.78
2991866--2991953	43	2.0	43	100	0	176	32	13	17	36	1.89
2995594--2995645	22	2.3	22	83	9	61	38	3	1	55	1.29
2995612--2995655	22	2.0	22	82	8	54	34	4	0	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2996515--2996667	76	2.0	77	98	1	299	33	8	6	50	1.58
3000961--3000999	17	2.1	17	86	13	51	82	0	17	0	0.68
3006242--3006280	2	19.5	2	100	0	78	0	51	0	48	1.00
3009496--3009528	11	3.1	11	82	8	50	63	6	0	30	1.18
3009503--3009603	38	2.6	39	78	21	115	62	3	2	30	1.28
3009503--3009680	19	9.3	18	69	18	87	59	3	3	33	1.32
3009503--3009680	9	18.6	9	69	20	87	59	3	3	33	1.32
3011590--3011648	22	2.7	21	76	7	64	52	16	13	16	1.75
3014857--3014911	26	2.1	26	86	6	76	34	21	27	16	1.95
3017709--3017750	22	2.0	22	85	4	59	38	0	7	54	1.28
3019425--3019459	18	1.9	18	88	11	54	37	2	0	60	1.12
3024077--3024302	124	1.8	124	91	1	373	31	16	19	32	1.94
3025847--3025982	29	4.7	29	100	0	272	27	0	27	44	1.54
3025988--3026176	71	2.6	71	91	0	306	44	13	2	39	1.58
3026064--3026176	35	3.2	35	64	16	88	44	13	2	39	1.58
3026558--3026592	18	1.9	18	88	0	52	31	8	34	25	1.86
3027242--3027266	7	3.6	7	100	0	50	60	12	0	28	1.32
3028382--3028503	51	2.4	51	88	4	183	42	0	28	28	1.56
3028472--3028501	12	2.5	12	100	0	60	43	0	30	26	1.55
3028715--3028775	29	2.1	28	78	3	68	45	14	13	26	1.81
3030108--3030143	18	1.9	18	88	5	54	47	22	5	25	1.73
3035148--3035201	3	18.0	3	96	0	99	31	0	1	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3056504--3056635	64	2.1	64	97	0	246	25	20	16	37	1.93
3059430--3059496	34	1.9	35	90	3	109	47	11	8	31	1.71
3070121--3070180	30	2.0	30	83	6	77	58	3	1	36	1.25
3071106--3071169	23	2.6	25	73	9	60	39	1	1	57	1.17
3072529--3072651	62	2.0	62	91	3	203	24	2	23	49	1.62
3072610--3072854	103	2.4	105	88	6	374	28	0	15	56	1.39
3072879--3072918	18	2.4	16	88	12	55	22	2	5	70	1.19
3073919--3074779	457	1.9	457	96	0	1598	24	22	24	29	1.99
3075631--3075662	12	2.7	12	90	0	55	25	34	37	3	1.72
3075632--3075675	18	2.4	18	81	7	54	29	27	38	4	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79