genome.fa.s7.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  44  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14587275--14587306	12	2.7	12	95	0	55	28	3	56	12	1.51
14588163--14588247	42	2.0	42	100	0	170	40	11	27	21	1.88
14595490--14595550	24	2.8	21	76	13	68	27	26	14	31	1.95
14595504--14595550	24	2.0	24	95	0	85	29	25	14	29	1.95
14595543--14595575	17	1.9	17	93	0	57	30	15	18	36	1.91
14596933--14597008	27	2.8	26	74	7	71	21	15	38	25	1.92
14597956--14598060	49	2.1	49	82	0	120	25	17	25	31	1.97
14598729--14598764	5	7.0	5	87	6	54	38	5	16	38	1.72
14616959--14617007	25	2.0	25	84	8	64	75	18	4	2	1.06
14646599--14646651	25	2.1	25	82	6	63	50	1	1	45	1.23
14646724--14646761	16	2.4	16	90	0	58	39	2	31	26	1.70
14646787--14646832	24	1.9	24	86	8	67	36	2	30	30	1.70
14649515--14649710	50	3.8	50	80	4	176	28	19	28	23	1.99
14652922--14652969	25	1.9	25	91	0	78	43	16	18	20	1.88
14656737--14656804	30	2.3	30	82	12	79	55	5	5	32	1.48
14661834--14661871	16	2.4	16	90	0	58	31	0	34	34	1.58
14661850--14661959	45	2.6	43	80	9	129	33	5	29	31	1.80
14663464--14663502	20	2.0	20	100	0	78	30	25	17	25	1.97
14669721--14669777	20	2.8	20	75	17	55	28	1	0	70	0.98
14684335--14684377	18	2.4	18	84	0	59	62	9	13	13	1.53
14684597--14684642	22	2.0	24	83	8	60	26	28	0	45	1.54
14685820--14685853	8	4.2	8	100	0	68	11	11	11	64	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14688882--14688907	2	13.0	2	100	0	52	0	0	50	50	1.00
14689602--14689663	30	2.1	30	100	0	124	16	11	19	53	1.72
14691608--14691701	46	2.0	46	100	0	188	45	18	4	31	1.68
14696035--14696065	15	2.1	15	100	0	62	41	12	6	38	1.69
14696390--14696417	14	2.0	14	100	0	56	14	14	35	35	1.86
14701897--14702158	131	2.0	131	81	7	309	37	24	8	29	1.84
14708103--14708215	44	2.6	44	74	14	117	25	18	27	28	1.98
14711739--14711820	30	2.7	30	81	3	85	29	9	20	40	1.85
14722221--14722258	3	12.7	3	100	0	76	65	0	0	34	0.93
14722331--14722401	31	2.1	34	85	10	94	18	28	16	36	1.93
14725205--14725244	20	2.0	20	85	9	55	67	2	0	30	1.04
14725437--14725477	19	2.0	20	86	9	57	58	0	2	39	1.11
14731239--14731263	13	1.9	13	100	0	50	32	28	32	8	1.86
14732064--14732531	235	2.0	235	94	0	828	42	14	10	32	1.80
14734613--14734640	12	2.3	12	100	0	56	42	25	7	25	1.80
14738573--14738683	35	3.1	35	85	1	150	40	28	12	18	1.87
14741031--14741076	19	2.3	19	81	7	56	19	8	23	47	1.77
14744641--14744685	23	2.0	23	81	0	54	22	0	15	62	1.33
14746293--14747431	404	2.8	403	96	0	2098	25	21	21	31	1.98
14750739--14750771	14	2.3	15	89	5	50	30	12	30	27	1.92
14752098--14752316	88	2.5	88	87	3	332	27	26	24	21	1.99
14752328--14752448	44	2.7	43	88	5	172	27	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14752812--14753094	44	6.5	43	73	13	206	29	20	20	29	1.98
14754349--14754396	25	2.0	24	84	12	62	22	10	8	58	1.58
14756398--14756478	9	8.7	9	76	13	67	64	2	1	32	1.15
14756394--14756441	19	2.7	18	84	9	62	72	2	0	25	0.95
14756415--14756470	19	2.9	19	73	7	60	58	1	1	37	1.19
14757407--14757487	9	8.7	9	76	13	67	64	2	1	32	1.15
14757403--14757450	19	2.7	18	84	9	62	72	2	0	25	0.95
14757424--14757479	19	2.9	19	73	7	60	58	1	1	37	1.19
14757857--14757919	10	6.4	10	71	14	51	25	4	0	69	1.07
14757857--14757917	29	2.1	28	88	8	88	26	4	0	68	1.09
14757848--14757918	29	2.4	29	77	15	83	28	4	1	66	1.19
14757886--14757932	19	2.4	20	89	3	69	25	4	4	65	1.29
14757944--14757998	19	2.8	19	76	13	58	30	0	5	63	1.17
14767368--14767451	37	2.3	37	87	4	125	35	14	13	36	1.85
14770286--14770324	19	2.1	19	85	0	51	51	2	0	46	1.14
14771207--14771240	15	2.4	14	90	5	50	73	2	0	23	0.97
14778862--14778986	46	2.7	46	80	3	135	24	24	18	32	1.97
14778938--14779169	93	2.5	93	81	6	247	28	22	16	31	1.96
14793233--14793496	131	2.0	132	97	2	505	32	15	12	39	1.85
14798648--14798686	20	1.9	20	84	5	51	23	2	7	66	1.30
14800162--14800284	47	2.6	47	80	2	140	38	7	16	38	1.76
14800392--14800634	41	5.9	41	99	0	477	19	23	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14807784--14807945	47	3.4	47	74	5	139	38	6	14	40	1.71
14813133--14813552	209	2.0	210	99	0	833	40	12	10	36	1.78
14816280--14816584	84	3.6	83	79	7	226	41	15	21	21	1.90
14816626--14817043	81	5.2	81	94	0	701	35	21	21	22	1.96
14839306--14839378	24	3.0	24	80	11	78	21	15	31	31	1.94
14839429--14839603	28	6.2	28	78	2	163	32	19	24	24	1.97
14839414--14839603	56	3.4	56	80	1	211	31	18	25	24	1.98
14855940--14855995	22	2.6	21	76	13	60	10	21	5	62	1.47
14855943--14855995	21	2.5	22	79	14	65	7	20	5	66	1.38
14856010--14856063	15	3.7	15	78	12	58	1	22	1	74	1.02
14858160--14858192	13	2.7	13	90	9	52	18	6	6	69	1.30
14864863--14864934	33	2.1	34	92	2	119	38	6	13	40	1.72
14882640--14882674	18	1.9	18	88	0	52	17	11	25	45	1.81
14888709--14888801	32	3.0	31	74	12	84	21	13	23	40	1.89
14891881--14891909	6	4.8	6	100	0	58	17	31	0	51	1.45
14895826--14896021	97	2.0	98	97	1	376	33	17	14	35	1.90
14904825--14905041	28	7.8	28	99	0	425	32	11	24	32	1.90
14905646--14905879	23	10.0	23	75	10	181	29	13	16	40	1.87
14905646--14905879	47	5.0	47	82	2	310	29	13	16	40	1.87
14905641--14905879	93	2.6	93	93	0	415	29	13	16	40	1.86
14910616--14910765	23	6.4	24	75	9	123	28	16	17	38	1.91
14911092--14911156	23	2.8	23	70	9	60	29	12	16	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14911092--14912755	93	17.8	92	86	3	1254	28	14	17	39	1.89
14911092--14912754	279	5.9	277	80	4	1394	28	14	17	39	1.89
14911870--14912069	55	4.0	53	74	17	219	30	14	18	37	1.90
14911950--14912729	23	33.5	22	68	19	297	28	13	17	40	1.88
14912494--14912717	95	2.4	95	90	1	362	29	11	18	41	1.85
14913105--14913243	23	6.0	23	75	5	136	30	12	15	41	1.84
14913086--14913303	47	4.7	46	75	9	178	29	13	17	38	1.89
14913086--14913237	47	3.3	47	79	1	189	30	13	16	40	1.86
14919547--14919585	20	2.0	20	84	0	51	30	17	2	48	1.61
14923294--14923327	10	3.3	10	91	4	50	14	2	2	79	0.97
14926587--14926631	15	2.7	16	83	16	56	46	11	0	42	1.39
14930001--14930336	43	7.8	43	90	0	492	29	33	17	19	1.95
14930708--14930740	17	1.9	17	100	0	66	48	18	9	24	1.76
14934748--14934774	14	1.9	14	100	0	54	44	48	0	7	1.31
14934791--14934964	81	2.1	82	82	9	205	44	26	2	26	1.66
14934956--14935020	14	4.6	14	79	5	69	35	38	0	26	1.57
14934956--14935034	28	2.8	29	82	3	81	36	39	1	22	1.63
14935107--14935144	14	2.7	14	87	0	58	44	26	0	28	1.54
14935483--14935625	41	3.5	41	89	4	227	34	30	20	15	1.93
14935661--14935796	40	3.4	40	81	2	148	18	25	20	36	1.95
14947836--14947962	45	2.8	44	85	5	175	47	14	18	18	1.83
14947881--14947950	21	3.2	21	67	25	63	50	10	18	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14950886--14950917	6	5.3	6	100	0	64	34	0	50	15	1.45
14951247--14951291	3	15.0	3	95	0	81	64	0	2	33	1.06
14956523--14956555	17	1.9	17	88	11	50	45	12	0	42	1.41
14959416--14959444	12	2.5	12	94	5	51	0	44	0	55	0.99
14964721--14964763	14	2.9	15	86	10	61	6	0	9	83	0.80
14965714--14965769	18	3.0	20	87	7	73	80	1	10	7	0.97
14968200--14968267	22	3.0	22	69	12	57	27	22	13	36	1.91
14987401--14987608	51	4.1	51	91	1	312	32	14	24	28	1.95
14987401--14987608	102	2.0	101	94	0	362	32	14	24	28	1.95
14989291--14989384	36	2.6	36	84	3	118	13	28	12	44	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79