genome.fa.s7.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  45  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14989284--14989348	18	3.6	18	67	8	51	13	29	12	44	1.81
14991666--14991744	24	3.3	23	84	7	95	55	21	1	21	1.50
14992171--14992202	16	2.0	17	88	11	50	59	15	0	25	1.36
14994499--14994589	45	2.0	45	91	0	146	30	25	17	26	1.97
14998528--14998801	138	2.0	136	90	2	435	46	5	13	33	1.67
15007995--15008049	13	4.2	13	81	9	58	54	29	5	10	1.57
15008755--15008861	35	3.0	35	78	6	117	44	13	16	25	1.84
15017573--15017604	3	10.7	3	100	0	64	31	0	0	68	0.90
15018335--15018390	23	2.4	23	82	11	69	69	1	7	21	1.22
15019064--15019110	21	2.1	24	84	11	64	40	6	0	53	1.27
15018954--15019418	161	3.0	157	86	6	651	42	9	4	43	1.57
15029996--15030128	66	2.0	66	95	0	239	29	21	23	25	1.99
15036739--15036769	9	3.4	9	90	0	53	25	12	22	38	1.90
15036822--15036858	9	4.1	9	92	0	65	45	13	10	29	1.77
15037690--15037715	5	5.2	5	100	0	52	19	19	19	42	1.90
15040336--15040414	37	2.1	37	97	0	149	22	27	13	35	1.93
15055639--15055679	20	2.0	20	90	0	64	7	24	36	31	1.83
15056772--15056836	25	2.6	25	87	0	85	38	23	16	21	1.93
15070702--15070901	39	5.2	39	85	1	276	32	23	13	31	1.92
15070701--15070901	77	2.6	77	84	0	276	32	22	12	31	1.92
15076282--15076318	17	2.2	17	100	0	74	18	13	45	21	1.84
15079330--15079505	44	4.0	44	100	0	352	27	29	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15080535--15080656	57	2.1	57	80	10	133	43	14	22	19	1.87
15080567--15080767	108	1.9	105	86	3	285	38	17	20	22	1.93
15081361--15081511	49	3.1	49	68	5	126	32	17	22	27	1.97
15083158--15083192	18	1.9	18	94	0	61	40	5	17	37	1.73
15084704--15084764	31	2.0	31	87	6	88	62	0	1	36	1.05
15084704--15084784	41	2.0	42	95	2	146	61	0	2	35	1.09
15087717--15087752	5	7.2	5	100	0	72	41	19	19	19	1.90
15093049--15093098	21	2.4	21	86	0	73	28	26	28	18	1.98
15101759--15101890	36	3.6	37	77	13	132	19	14	31	34	1.92
15103060--15103105	21	2.2	21	77	18	51	26	28	8	36	1.86
15114270--15114780	257	2.0	257	84	2	668	33	18	26	22	1.96
15120820--15120853	16	2.1	17	88	5	52	35	20	5	38	1.77
15123105--15123172	26	2.6	26	92	0	109	25	26	26	22	2.00
15140171--15140208	19	2.0	19	89	0	58	44	0	18	36	1.50
15142673--15142697	12	2.1	12	100	0	50	16	28	32	24	1.96
15163980--15164174	51	3.9	50	82	3	212	30	26	16	26	1.97
15175666--15175741	25	3.0	25	79	7	82	40	9	14	35	1.78
15196289--15196327	20	2.0	20	90	10	62	15	23	5	56	1.59
15196535--15196712	50	3.6	50	79	3	173	21	26	23	28	1.99
15198981--15199030	25	2.0	25	100	0	100	44	4	16	36	1.66
15200978--15201018	20	2.0	20	95	0	73	14	12	9	63	1.52
15205317--15205341	6	4.2	6	100	0	50	16	16	0	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214545--15214592	24	2.0	24	95	0	87	16	14	18	50	1.79
15215422--15215725	159	1.9	163	87	7	449	41	12	9	36	1.76
15216283--15216936	125	5.3	124	92	0	988	28	17	22	31	1.96
15218276--15218360	44	1.9	44	100	0	170	29	21	20	29	1.98
15219976--15220244	114	2.4	114	96	0	493	42	7	10	39	1.68
15220252--15221540	21	61.0	21	83	5	1440	25	0	27	46	1.56
15220722--15220791	33	2.1	35	89	5	108	27	0	25	47	1.53
15222092--15222135	18	2.4	18	88	0	70	45	6	27	20	1.76
15222780--15222805	7	3.7	7	100	0	52	57	15	0	26	1.38
15222974--15223011	20	1.9	20	84	10	51	55	7	2	34	1.43
15230439--15230514	38	2.0	38	92	0	125	31	14	23	30	1.94
15234697--15234744	19	2.6	19	77	12	55	62	6	4	27	1.38
15235673--15235709	17	2.1	18	85	14	51	81	0	8	10	0.89
15236877--15237474	44	13.8	44	73	8	301	28	23	19	28	1.98
15237094--15237302	88	2.4	88	92	0	346	32	23	15	28	1.96
15236840--15237301	217	2.1	215	86	4	617	30	24	18	26	1.98
15237399--15237516	44	2.7	43	77	10	125	26	20	19	33	1.96
15237522--15237829	132	2.3	132	92	0	519	23	23	22	30	1.99
15237862--15238362	87	5.8	87	93	0	822	25	24	22	28	1.99
15241610--15241656	7	6.9	7	86	13	71	14	14	0	70	1.18
15241619--15241657	13	2.9	13	96	3	69	12	15	0	71	1.14
15242537--15242632	45	2.1	46	81	12	110	10	12	5	71	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15242603--15242638	14	2.7	13	87	8	54	13	5	5	75	1.17
15242575--15242638	32	2.0	32	82	11	78	12	9	4	73	1.23
15242522--15242640	53	2.2	54	79	10	138	9	13	4	73	1.23
15248086--15248718	318	2.0	317	96	0	1176	32	16	21	28	1.96
15249719--15249801	44	1.9	44	82	4	107	50	3	8	37	1.50
15249736--15249799	23	2.9	22	77	13	69	51	3	6	39	1.43
15257669--15257714	9	5.1	9	97	0	83	47	10	8	32	1.69
15262209--15262261	20	2.7	19	85	8	70	28	22	16	32	1.96
15266918--15267027	56	2.0	56	98	0	211	24	7	30	37	1.83
15270032--15270148	27	4.4	26	74	9	85	41	11	22	24	1.86
15271641--15271703	26	2.4	26	86	0	90	38	14	7	39	1.75
15290849--15291001	49	3.4	43	71	19	123	28	18	18	34	1.95
15290847--15291263	94	4.5	95	80	4	418	28	18	18	33	1.95
15291229--15291339	44	2.5	44	82	2	134	27	14	21	36	1.93
15291143--15291401	138	1.9	137	81	2	313	28	18	19	33	1.95
15291455--15291702	44	5.5	44	68	13	130	29	21	18	31	1.97
15291455--15291747	138	2.1	138	84	1	381	29	21	18	30	1.97
15301058--15301098	7	5.7	7	83	16	57	82	0	0	17	0.66
15301052--15301098	15	3.1	16	88	8	64	80	0	0	19	0.70
15311073--15311203	65	2.0	65	100	0	262	34	6	12	47	1.66
15313648--15313837	31	6.1	31	80	3	186	21	26	12	40	1.88
15321280--15321310	16	1.9	16	93	0	53	74	0	3	22	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15325089--15325187	47	2.1	47	82	3	117	35	23	10	31	1.88
15328784--15328827	20	2.1	21	84	12	56	45	4	0	50	1.22
15330599--15330643	13	2.8	18	75	25	55	24	8	0	66	1.20
15332346--15332828	241	2.0	241	93	0	822	31	17	22	29	1.96
15340733--15340793	12	5.1	12	75	15	54	42	26	4	26	1.75
15342082--15342108	7	3.9	7	100	0	54	40	0	0	59	0.98
15348953--15349150	105	1.9	105	94	0	351	28	20	17	33	1.95
15352750--15352796	9	5.1	9	92	2	67	57	0	42	0	0.98
15352751--15352791	3	13.7	3	89	0	64	60	0	39	0	0.96
15360769--15360867	27	3.7	27	71	10	67	36	19	27	17	1.94
15365674--15365711	19	2.0	19	100	0	76	26	15	15	42	1.87
15367340--15367373	17	2.0	17	100	0	68	29	11	11	47	1.76
15370871--15370901	14	2.1	15	94	5	55	3	22	0	74	0.96
15373399--15373436	19	2.0	19	85	10	51	21	42	0	36	1.53
15387101--15387259	61	2.6	61	81	3	178	28	25	16	28	1.97
15387121--15387299	61	2.9	59	82	7	182	28	24	16	31	1.96
15391947--15392376	214	2.0	215	99	0	853	37	8	8	45	1.65
15415569--15415757	49	3.7	50	82	6	202	23	28	21	25	1.99
15415569--15415765	56	3.8	50	82	6	200	23	28	21	26	1.99
15416101--15416158	30	1.9	30	85	0	80	31	25	6	36	1.83
15426037--15426325	50	5.7	50	82	4	296	22	29	21	27	1.99
15428749--15428798	19	2.5	20	84	12	68	58	32	4	6	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15429059--15429151	5	18.8	5	79	10	102	36	21	5	36	1.77
15429083--15429148	20	3.3	20	95	2	116	36	21	3	39	1.69
15433838--15433881	23	1.9	24	86	9	65	68	2	0	29	1.02
15436938--15437232	144	2.0	145	99	0	583	34	8	15	40	1.78
15448197--15448242	24	2.0	23	82	4	56	43	17	8	30	1.79
15449088--15449157	34	2.1	34	97	0	131	34	27	17	21	1.95
15451734--15451778	1	45.0	1	90	0	72	95	0	4	0	0.26
15454983--15455036	17	3.2	18	80	19	64	53	0	0	46	1.00
15454983--15455027	17	2.8	17	86	10	67	48	0	0	51	1.00
15458747--15458778	16	2.0	16	93	0	55	59	9	0	31	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79