genome.fa.s7.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  28  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9601245--9601345	37	2.7	37	78	0	103	31	5	17	44	1.73
9601953--9602010	28	2.0	29	86	6	82	29	15	3	51	1.60
9602888--9602951	23	2.9	21	84	11	83	21	29	0	48	1.51
9602892--9602965	11	6.7	11	73	15	55	25	29	0	44	1.54
9604754--9604796	18	2.4	18	84	0	50	18	25	9	46	1.79
9607522--9607601	39	2.1	39	100	0	160	25	10	22	42	1.84
9610849--9611090	50	4.9	50	81	6	233	27	21	28	22	1.99
9614596--9614881	125	2.3	126	92	4	472	29	19	18	32	1.96
9614924--9615241	96	3.2	94	83	7	359	38	17	2	40	1.63
9614995--9615249	96	2.6	97	88	1	361	40	16	2	40	1.63
9615247--9615276	8	3.8	8	90	0	51	50	46	0	3	1.18
9615249--9615312	27	2.3	29	86	5	87	45	45	0	9	1.36
9620291--9620508	86	2.5	85	77	8	235	37	20	10	31	1.87
9620542--9620578	19	1.9	19	88	0	56	59	0	2	37	1.12
9620856--9621087	94	2.5	90	75	14	242	36	9	17	35	1.83
9649460--9649496	18	2.2	18	90	9	60	24	43	0	32	1.55
9652496--9652598	25	4.2	25	73	8	95	20	28	21	30	1.98
9653499--9653528	15	1.9	16	93	6	53	10	6	3	80	1.01
9654277--9654338	31	2.0	31	90	0	97	33	3	4	58	1.36
9654276--9654348	31	2.5	30	84	8	96	31	2	5	60	1.34
9654444--9654494	26	2.0	25	81	7	59	27	1	9	60	1.39
9662082--9662114	16	2.0	17	88	5	50	45	0	6	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9662934--9662994	25	2.6	23	73	5	59	18	31	19	31	1.96
9671089--9671217	66	2.0	66	84	6	172	51	10	12	26	1.71
9673887--9673923	11	3.3	11	92	3	56	18	8	24	48	1.75
9685775--9687408	821	2.0	821	100	0	3268	34	13	10	41	1.79
9696989--9697043	7	7.4	7	79	18	58	69	10	18	1	1.27
9698836--9698878	21	2.0	22	90	4	70	55	6	0	37	1.27
9698838--9698885	21	2.3	21	85	7	62	60	6	0	33	1.22
9698844--9698891	21	2.4	19	80	16	53	62	6	0	31	1.20
9699256--9699295	9	4.4	9	81	12	55	32	2	0	65	1.06
9701435--9701483	22	2.2	22	88	0	71	38	12	32	16	1.86
9705527--9705601	19	3.8	19	89	6	123	33	10	20	36	1.87
9712744--9712872	65	2.0	65	90	3	206	22	31	24	20	1.98
9712809--9714089	88	14.6	87	84	2	1278	28	25	23	22	1.99
9712834--9714089	439	2.9	439	84	1	1577	28	25	23	22	1.99
9713641--9713955	44	7.2	44	65	9	149	26	25	25	22	2.00
9712809--9714089	527	2.4	526	88	0	1952	28	25	23	22	1.99
9714462--9714692	40	5.8	40	100	0	462	34	10	17	37	1.84
9717850--9717884	18	1.9	18	100	0	70	25	17	22	34	1.96
9727011--9727056	6	7.7	6	95	0	74	17	21	60	0	1.35
9731911--9732073	42	3.9	41	84	4	193	23	20	20	36	1.95
9731917--9732073	83	1.9	82	86	1	224	24	19	19	36	1.94
9732456--9732506	21	2.4	21	90	0	75	3	45	17	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9732391--9732550	87	1.8	87	87	0	230	13	30	16	40	1.87
9733469--9733567	9	10.9	9	79	2	108	30	1	18	50	1.53
9733469--9733567	18	5.4	18	84	2	126	30	1	18	50	1.53
9733596--9733648	8	6.0	8	79	16	52	30	0	11	58	1.33
9733590--9733685	29	3.1	32	80	13	101	31	1	12	55	1.44
9733906--9733943	16	2.4	16	91	4	60	52	5	0	42	1.24
9733940--9733967	13	2.2	13	100	0	56	46	7	7	39	1.59
9733936--9733985	17	3.2	17	81	18	72	52	6	6	36	1.51
9734755--9734809	30	1.9	29	82	10	69	58	9	3	29	1.46
9737246--9737294	14	3.3	15	80	13	66	36	48	2	12	1.52
9737246--9737307	7	8.7	7	79	10	56	35	50	1	12	1.51
9737249--9737336	28	3.1	28	82	11	99	35	45	2	17	1.61
9737249--9737318	14	5.0	14	75	15	65	37	45	1	15	1.55
9737482--9737520	20	2.0	20	89	0	60	28	53	2	15	1.55
9737482--9737528	20	2.3	20	85	0	58	29	48	2	19	1.60
9738209--9738528	114	2.8	113	79	7	308	30	22	17	28	1.97
9739707--9739735	12	2.4	12	100	0	58	44	0	6	48	1.29
9743409--9743848	46	9.3	46	80	8	506	30	25	16	27	1.96
9743422--9743845	97	4.4	96	83	7	510	30	25	16	27	1.97
9744771--9744820	7	7.1	7	100	0	100	86	0	0	14	0.58
9747395--9747445	23	2.2	23	89	6	77	41	19	9	29	1.84
9756793--9756826	16	2.1	16	88	0	50	44	20	14	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9759688--9759775	30	2.8	30	77	17	97	35	5	9	50	1.58
9759704--9759767	34	1.9	34	84	9	87	37	4	9	48	1.56
9759822--9759877	19	2.9	19	78	5	60	57	1	5	35	1.32
9759819--9759965	10	15.3	9	71	14	73	58	2	4	35	1.29
9759915--9759965	17	2.9	17	82	8	59	66	1	0	31	1.03
9767641--9768025	190	2.0	191	95	1	693	26	16	17	39	1.90
9786644--9786693	25	2.0	25	84	7	66	26	10	14	50	1.73
9786729--9786967	31	7.7	31	69	15	149	34	7	17	39	1.79
9786729--9786967	61	3.9	62	71	18	201	34	7	17	39	1.79
9786724--9786981	92	2.8	92	91	0	399	34	7	17	40	1.78
9786978--9787126	31	4.9	31	76	4	124	30	8	16	44	1.77
9790294--9790325	16	2.0	16	100	0	64	50	25	0	25	1.50
9796517--9796545	13	2.2	13	100	0	58	13	0	13	72	1.13
9798863--9799381	282	1.9	277	78	6	580	30	10	10	48	1.73
9800863--9800906	6	7.2	6	81	2	52	0	56	0	43	0.99
9800863--9800906	18	2.4	18	92	3	70	0	56	0	43	0.99
9800965--9801025	25	2.4	27	76	18	67	3	34	3	59	1.30
9805602--9805640	17	2.4	16	91	4	60	48	0	0	51	1.00
9808887--9808935	19	2.6	19	93	0	80	48	14	14	22	1.79
9821773--9821833	31	2.0	31	86	0	86	29	14	9	45	1.77
9821766--9821841	31	2.5	31	78	4	82	26	14	10	48	1.76
9824066--9824106	14	3.0	13	82	10	55	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9824086--9824140	20	2.4	23	74	20	62	45	3	1	49	1.30
9824095--9824134	20	1.9	21	90	10	64	47	5	2	45	1.38
9834160--9834247	29	3.0	28	82	15	99	59	2	1	37	1.18
9834197--9834244	10	4.9	10	82	10	55	66	0	0	33	0.92
9834197--9834243	19	2.4	19	82	3	58	68	0	0	31	0.90
9836826--9836954	31	4.2	31	66	15	79	35	18	21	24	1.95
9844004--9844105	25	4.1	25	82	3	109	32	23	27	16	1.96
9844023--9844166	25	5.8	25	74	11	102	31	21	29	17	1.96
9844070--9844198	50	2.6	48	73	18	120	37	18	26	17	1.93
9853900--9854091	25	7.7	25	79	5	149	35	20	25	18	1.95
9853933--9854110	25	7.2	25	81	2	153	34	20	26	17	1.95
9856067--9856091	4	6.2	4	100	0	50	72	0	0	28	0.86
9858406--9858456	21	2.5	20	79	14	61	35	3	3	56	1.36
9860884--9860942	21	2.5	25	86	10	81	32	6	0	61	1.22
9863571--9863601	2	15.5	2	100	0	62	51	0	48	0	1.00
9864549--9864594	20	2.2	21	88	7	67	78	2	13	6	1.04
9864565--9864608	24	2.0	22	82	13	54	84	0	11	4	0.77
9871792--9871829	15	2.5	15	87	8	51	34	0	0	65	0.93
9873312--9873409	49	2.0	49	83	0	124	27	16	28	27	1.97
9876425--9876454	15	2.0	15	93	0	51	26	36	0	36	1.57
9877757--9877815	26	2.3	26	85	5	75	30	13	13	42	1.83
9877745--9877815	25	2.8	25	81	10	74	29	16	11	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9881506--9881566	15	4.1	15	93	0	104	29	6	36	27	1.82
9883477--9883559	22	3.8	22	79	3	69	37	16	28	16	1.91
9883544--9883608	22	3.0	22	86	0	85	43	7	29	20	1.79
9900505--9900535	5	6.2	5	92	0	53	41	16	19	22	1.89
9903337--9903722	185	2.1	186	90	3	602	49	9	10	31	1.68
9903895--9903921	7	3.9	7	100	0	54	40	0	0	59	0.98
9904042--9904093	17	3.1	17	91	0	86	38	9	1	50	1.46
9904483--9904544	19	3.2	19	76	13	72	50	14	16	19	1.79
9917680--9917721	20	2.2	19	87	12	59	14	21	7	57	1.61
9919675--9919705	12	2.6	12	94	0	53	58	3	0	38	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79