genome.fa.s7.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  39  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12864269--12864378	55	2.0	55	92	0	184	37	10	11	40	1.77
12868983--12869031	22	2.2	21	86	13	64	63	0	2	34	1.06
12868983--12869031	21	2.2	22	86	13	66	63	0	2	34	1.06
12879706--12879786	27	2.8	30	78	12	82	54	4	2	38	1.35
12879930--12879994	24	2.8	24	81	6	71	44	1	10	43	1.48
12879979--12880059	22	3.7	22	77	14	78	51	2	8	37	1.46
12881048--12881083	13	2.6	14	82	8	56	5	16	0	77	0.94
12881826--12882041	117	1.8	117	91	0	360	28	22	20	28	1.99
12882170--12882554	87	4.4	87	67	14	218	28	24	17	29	1.98
12881923--12882664	132	5.6	132	93	1	1233	28	24	18	28	1.98
12881923--12882664	263	2.8	263	92	2	1233	28	24	18	28	1.98
12883872--12883954	42	2.0	42	97	0	157	28	27	12	31	1.92
12884041--12884090	7	7.0	7	80	15	50	14	18	0	68	1.22
12884051--12884090	21	1.9	21	90	10	64	12	17	0	70	1.18
12884044--12884096	21	2.5	21	81	9	63	11	15	0	73	1.09
12889450--12889530	24	3.5	24	69	14	71	49	2	11	37	1.52
12889534--12889599	20	3.1	22	75	18	68	54	3	7	34	1.44
12890589--12890625	13	2.6	15	79	16	51	2	18	2	75	1.04
12892860--12892905	7	6.4	7	79	20	51	69	0	15	15	1.19
12892860--12892886	13	2.1	13	100	0	54	70	0	14	14	1.17
12892863--12892905	22	1.9	23	90	4	70	72	0	13	13	1.13
12894133--12894385	44	5.8	44	100	0	506	32	23	24	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12894389--12894863	128	3.7	128	94	0	833	32	18	22	25	1.97
12894947--12895227	44	6.7	39	70	14	125	32	19	19	28	1.96
12894947--12895055	39	2.6	42	84	7	134	30	22	21	25	1.99
12894947--12895068	44	2.9	43	84	6	144	30	22	22	24	1.99
12901249--12901447	60	3.3	59	80	11	199	43	15	16	24	1.86
12901308--12901447	62	2.3	63	85	8	191	43	15	15	25	1.86
12901496--12901534	16	2.4	17	86	4	53	15	2	15	66	1.36
12901533--12901611	37	2.1	36	84	13	99	27	8	8	54	1.61
12904714--12904760	17	2.8	17	87	6	60	44	14	6	34	1.71
12905056--12905214	79	2.0	79	100	0	318	35	22	17	23	1.95
12905505--12905574	36	1.9	36	85	5	97	42	21	7	28	1.79
12905886--12905964	36	2.2	36	93	4	135	49	13	0	36	1.43
12905898--12905960	17	3.3	20	65	26	55	49	15	0	34	1.45
12908024--12908369	87	4.0	87	90	0	521	23	24	22	29	1.99
12908031--12908367	44	7.7	44	65	2	194	24	24	21	29	1.99
12917966--12917996	9	3.4	9	90	0	53	25	12	22	38	1.90
12918049--12918085	9	4.1	9	92	0	65	45	13	10	29	1.77
12919807--12919883	26	3.0	26	86	0	109	19	23	22	35	1.96
12932295--12932400	23	4.7	23	80	5	119	40	20	17	20	1.91
12933577--12933615	18	2.2	18	86	9	53	12	12	2	71	1.24
12934635--12934668	16	2.2	16	89	5	52	50	11	8	29	1.69
12935921--12936353	213	2.0	212	98	0	839	45	15	6	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938964--12939180	84	2.6	83	88	1	308	55	4	17	23	1.59
12939178--12939360	84	2.2	84	87	2	269	25	18	1	55	1.50
12940667--12940692	13	2.0	13	100	0	52	7	15	15	61	1.55
12944099--12944153	9	6.1	9	91	0	92	25	12	20	41	1.87
12945279--12945352	27	2.7	29	80	16	77	66	1	5	27	1.22
12945379--12945424	20	2.3	21	82	14	62	60	2	10	26	1.41
12945760--12945817	30	2.0	29	96	3	107	34	0	0	65	0.93
12945784--12945836	20	2.7	19	82	11	63	28	1	1	67	1.11
12946011--12946176	84	2.0	85	83	3	210	35	10	15	39	1.81
12948536--12948654	33	3.6	33	82	6	152	42	9	8	40	1.67
12948536--12948661	65	1.9	65	95	0	225	42	10	7	39	1.68
12951090--12951357	143	1.9	143	89	1	421	28	22	20	28	1.98
12952240--12952302	32	1.9	33	84	9	85	4	12	3	79	1.01
12952238--12952297	27	2.2	26	80	13	68	5	15	1	78	1.00
12956939--12956976	15	2.7	14	80	11	51	60	0	7	31	1.25
12963297--12963326	15	2.0	15	93	0	51	33	16	6	43	1.74
12964811--12964875	28	2.2	29	83	5	78	32	1	0	66	1.01
12964847--12964888	20	2.0	21	90	4	68	33	0	2	64	1.07
12969455--12969527	19	3.8	19	85	0	110	41	9	12	36	1.75
12969668--12969754	45	1.9	45	95	0	156	48	4	22	24	1.69
12969766--12969808	19	2.2	19	83	8	50	18	9	4	67	1.36
12985236--12985289	3	17.3	3	81	14	65	37	1	0	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12995159--12995195	3	12.3	3	100	0	74	67	0	0	32	0.91
12998924--12999093	30	5.7	30	78	10	161	31	24	5	39	1.77
12998931--12999092	59	2.7	60	84	5	204	32	24	4	38	1.77
12999263--12999288	11	2.4	11	100	0	52	92	7	0	0	0.39
12999436--12999495	22	2.8	22	76	14	63	73	5	21	0	1.02
12999589--12999663	4	19.5	4	69	17	52	72	1	26	0	0.93
12999606--12999653	25	1.9	25	91	0	78	68	2	29	0	1.01
12999604--12999665	7	8.6	7	71	7	52	74	1	24	0	0.91
13000309--13000355	20	2.3	21	85	3	60	53	6	8	31	1.57
13000362--13000627	37	7.2	37	77	13	237	35	11	9	43	1.73
13000362--13000627	18	14.3	18	70	19	174	35	11	9	43	1.73
13000362--13000587	75	3.1	74	81	12	236	34	12	8	43	1.73
13000656--13000690	18	1.9	18	94	0	61	22	8	14	54	1.67
13002398--13002429	16	2.0	16	93	0	55	25	18	9	46	1.79
13006393--13006510	1	118.0	1	72	0	92	86	8	3	1	0.75
13006393--13006510	12	9.6	12	81	13	107	86	8	3	1	0.75
13006396--13006504	30	3.5	30	78	15	114	86	9	2	1	0.75
13006408--13006510	36	2.9	36	85	11	124	86	8	2	1	0.75
13006393--13006489	44	2.2	44	87	5	142	87	9	1	2	0.67
13006392--13006510	44	2.7	42	81	11	141	85	8	3	2	0.79
13007367--13008269	74	11.9	74	82	7	976	27	16	20	35	1.94
13007390--13008263	151	5.7	150	86	6	1045	27	16	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13008470--13008547	30	2.6	31	90	8	126	32	24	2	41	1.69
13008914--13008974	22	2.8	23	75	9	65	73	4	21	0	1.01
13009071--13009145	13	5.2	13	71	24	53	73	0	26	0	0.84
13009078--13009137	31	1.9	30	83	12	77	70	0	30	0	0.88
13009844--13009920	17	4.5	16	74	16	66	35	12	11	40	1.80
13009843--13009996	18	8.5	17	77	13	139	33	12	11	42	1.79
13010021--13010107	17	4.6	18	68	24	54	37	9	9	43	1.69
13009878--13010067	75	2.6	73	80	13	219	33	12	9	44	1.74
13009842--13010110	37	7.2	39	73	14	164	35	11	10	43	1.75
13011101--13011140	9	4.3	9	84	6	53	85	2	12	0	0.71
13011094--13011140	19	2.5	18	82	6	58	82	4	12	0	0.80
13016724--13016752	13	2.1	14	93	6	51	13	0	27	58	1.36
13017874--13017937	7	8.7	7	73	21	51	79	3	17	0	0.85
13017874--13017906	16	2.1	16	94	0	57	78	3	18	0	0.87
13017880--13017927	13	3.5	13	83	8	60	81	0	18	0	0.70
13022721--13022774	27	2.0	27	85	0	72	37	9	16	37	1.81
13028234--13028286	27	2.0	27	92	0	88	54	15	1	28	1.51
13033554--13033704	45	3.4	45	83	1	187	39	18	23	19	1.93
13038500--13039084	290	2.0	291	96	0	1091	38	15	13	32	1.87
13039325--13039380	23	2.4	23	96	0	103	41	0	5	53	1.24
13041427--13041483	25	2.2	26	81	9	64	42	24	12	21	1.87
13041493--13041609	27	4.3	27	86	8	141	24	16	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13041507--13041624	27	4.4	27	86	8	161	22	18	17	41	1.90
13041859--13041896	19	2.0	19	85	10	51	23	44	18	13	1.85
13049227--13049280	22	2.4	22	93	3	90	48	11	7	33	1.67
13050499--13050528	14	2.2	14	94	5	53	60	0	6	33	1.23
13056871--13056930	26	2.3	26	85	0	84	28	35	20	16	1.94
13060714--13060789	9	8.4	9	78	5	82	43	21	7	27	1.80
13060713--13060781	27	2.6	27	93	4	113	46	18	7	27	1.75
13060788--13060862	37	2.0	37	92	0	123	45	17	4	33	1.67
13060994--13061071	38	2.0	39	95	2	140	19	2	26	51	1.60
13061052--13061089	13	2.9	13	96	0	67	15	0	44	39	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79