genome.fa.s7.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  47  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15704685--15704853	56	3.1	55	62	22	120	45	8	19	26	1.79
15704606--15704878	108	2.5	108	93	0	456	45	9	18	26	1.80
15705689--15705741	9	5.7	9	75	6	52	0	7	11	81	0.88
15713226--15713300	32	2.4	30	79	16	89	42	0	34	22	1.54
15713729--15713764	18	2.1	17	89	5	54	25	5	13	55	1.60
15713345--15714010	329	2.0	329	94	0	1170	32	13	18	35	1.90
15715389--15715475	37	2.3	38	78	6	95	31	24	18	26	1.98
15716186--15716234	24	2.0	24	100	0	98	46	16	0	36	1.47
15723961--15724021	15	4.0	14	78	17	59	1	16	6	75	1.09
15731633--15731665	11	2.9	12	91	8	52	39	0	0	60	0.97
15731636--15731694	29	2.0	28	87	12	84	33	0	1	64	1.04
15731608--15731716	38	2.8	39	79	9	116	42	0	1	55	1.10
15731639--15731707	29	2.3	29	80	16	79	36	0	1	62	1.04
15731639--15731707	31	2.3	28	77	18	68	36	0	1	62	1.04
15732222--15732251	2	15.0	2	92	0	51	46	0	3	50	1.18
15733610--15733661	24	2.2	24	89	0	77	55	9	1	32	1.43
15735572--15735623	24	2.2	24	89	0	77	55	9	1	32	1.43
15737328--15737385	22	2.6	22	81	7	64	41	17	5	36	1.72
15737364--15737415	17	2.8	19	82	11	81	36	15	9	38	1.80
15738238--15738355	50	2.4	50	82	0	128	27	24	23	23	2.00
15738409--15738530	44	2.8	43	86	5	156	27	26	18	27	1.98
15738541--15739022	88	5.5	88	89	1	743	19	22	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15738541--15739013	44	10.8	44	64	7	136	19	22	28	28	1.98
15741181--15741223	20	2.2	20	95	0	77	58	0	11	30	1.34
15744962--15745076	19	5.8	19	84	7	149	39	15	6	38	1.75
15744962--15745076	38	2.9	38	92	5	176	39	15	6	38	1.75
15750870--15750930	30	2.0	30	84	6	79	78	11	3	6	1.05
15764021--15764074	26	2.1	26	89	0	81	18	11	12	57	1.64
15764926--15765468	44	12.6	43	77	8	423	30	21	20	27	1.98
15764906--15765345	129	3.4	128	83	4	508	32	21	19	26	1.97
15764906--15765432	88	6.1	88	78	7	497	32	21	20	26	1.97
15765625--15765686	31	2.0	30	84	9	81	75	12	3	8	1.14
15776491--15776554	13	4.9	13	86	0	92	25	6	26	42	1.78
15776494--15776554	26	2.3	26	94	0	104	26	4	26	42	1.75
15777007--15777036	12	2.5	12	100	0	60	33	10	10	46	1.71
15800065--15800110	16	2.9	16	81	12	51	60	2	0	36	1.09
15800065--15800097	17	2.0	17	88	5	50	60	0	0	39	0.97
15800333--15800365	7	4.6	7	96	3	57	60	0	0	39	0.97
15800333--15800371	14	2.7	15	88	11	64	58	0	0	41	0.98
15810414--15810441	12	2.3	12	100	0	56	57	7	0	35	1.26
15811327--15811383	28	2.0	28	93	0	96	47	14	7	31	1.70
15815278--15815311	17	2.0	17	94	0	59	26	35	20	17	1.95
15829415--15829458	9	4.8	9	77	5	52	29	4	0	65	1.12
15831478--15831530	21	2.6	20	82	8	63	22	24	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15845664--15845733	35	2.0	35	97	0	131	38	14	18	28	1.90
15850705--15850748	1	44.0	1	95	0	70	4	0	0	95	0.27
15850692--15850737	21	2.2	21	84	0	56	13	2	2	82	0.85
15850692--15850745	23	2.3	23	87	0	72	11	1	1	85	0.76
15852252--15852284	11	3.0	11	100	0	66	45	0	45	9	1.35
15861713--15861759	2	24.0	2	78	4	51	40	0	4	55	1.19
15864958--15865035	32	2.4	32	80	4	95	28	15	8	47	1.75
15866604--15866723	25	4.8	25	85	4	154	36	29	11	22	1.90
15868548--15868963	4	104.8	4	88	5	567	45	26	2	25	1.66
15879564--15879921	143	2.5	143	88	0	538	28	20	22	27	1.99
15889084--15889136	27	2.0	27	88	0	79	45	7	9	37	1.65
15890992--15891051	30	2.0	31	90	3	95	41	0	38	20	1.52
15891344--15891374	9	3.4	9	90	0	53	38	22	12	25	1.90
15891357--15891398	21	1.9	23	85	9	61	33	16	9	40	1.81
15896722--15896748	14	1.9	14	100	0	54	40	7	14	37	1.74
15898389--15898424	16	2.2	16	95	0	63	22	30	5	41	1.76
15899486--15899540	25	2.1	27	83	6	69	30	18	12	38	1.88
15909617--15909663	16	2.9	16	84	12	60	51	0	27	21	1.48
15910475--15910519	19	2.4	19	88	7	65	42	15	15	26	1.87
15914536--15914565	12	2.4	13	94	5	53	66	16	0	16	1.25
15919518--15919570	26	2.0	26	100	0	106	66	3	18	11	1.38
15922954--15923054	28	3.5	28	75	13	98	47	10	3	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15923102--15923137	2	18.0	2	94	0	63	47	0	2	50	1.15
15940482--15940722	83	2.9	83	88	4	349	35	26	16	21	1.95
15943956--15944002	24	2.0	24	83	8	60	25	12	19	42	1.86
15947034--15947087	27	2.0	27	100	0	108	40	3	11	44	1.58
15956525--15956607	19	4.4	19	76	10	73	66	4	1	27	1.19
15964398--15964439	21	2.0	21	86	9	59	35	28	9	26	1.88
15977873--15977904	10	3.1	10	91	8	55	9	0	0	90	0.45
15977873--15977904	11	3.0	11	95	4	57	9	0	0	90	0.45
15985685--15985728	3	14.7	3	95	0	79	63	0	2	34	1.07
15997746--15997796	27	1.9	28	84	11	72	47	5	5	41	1.52
15998859--15998903	23	2.0	23	81	0	54	22	0	15	62	1.33
15999498--15999552	13	4.1	14	73	15	53	18	1	7	72	1.16
15999560--15999591	15	2.1	15	94	0	55	18	0	15	65	1.27
16001296--16001340	11	4.2	10	81	13	54	24	28	0	46	1.53
16001337--16001393	29	2.0	29	92	0	96	40	0	5	54	1.23
16001337--16001401	29	2.3	29	87	7	91	36	0	4	58	1.19
16003880--16004076	84	2.4	84	93	0	342	36	25	16	21	1.94
16003835--16004075	42	5.7	43	79	9	266	35	26	17	20	1.95
16005562--16005600	7	5.6	7	100	0	78	28	0	15	56	1.40
16006093--16006157	29	2.2	31	78	15	75	30	38	16	13	1.88
16006243--16006285	18	2.4	18	92	0	68	16	27	11	44	1.82
16006837--16006936	33	3.2	33	69	13	102	31	10	5	54	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16009976--16010519	126	4.3	126	91	0	849	28	21	17	32	1.96
16010809--16010854	22	2.1	22	100	0	92	47	39	0	13	1.42
16012039--16012064	5	5.2	5	100	0	52	38	19	19	23	1.93
16012013--16012064	26	2.0	26	81	7	61	34	15	26	23	1.94
16011766--16012362	303	2.0	304	99	0	1187	34	13	16	35	1.88
16013189--16013219	9	3.4	9	90	0	53	38	22	12	25	1.90
16013659--16013726	27	2.5	27	79	9	84	42	16	7	33	1.76
16015070--16015117	26	2.0	26	84	15	68	43	14	2	39	1.57
16015297--16015366	37	1.9	36	85	8	97	54	4	1	40	1.29
16015218--16015348	68	1.9	69	85	1	183	49	6	3	40	1.45
16019173--16019226	26	2.0	27	96	3	101	29	12	7	50	1.68
16019678--16019720	22	2.0	22	95	0	77	39	9	6	44	1.64
16030635--16030677	19	2.2	20	95	4	79	32	11	20	34	1.89
16030958--16031014	27	2.1	27	87	6	80	33	15	14	36	1.88
16032992--16033045	26	2.1	26	86	6	74	25	20	9	44	1.81
16037856--16037945	3	29.7	3	81	8	94	60	2	2	35	1.22
16052399--16052440	6	7.0	6	100	0	84	50	0	16	33	1.46
16056054--16056133	39	2.0	40	88	7	119	55	8	5	31	1.52
16056110--16056188	39	2.1	38	84	9	101	46	11	2	39	1.53
16056766--16056832	34	1.9	35	93	3	118	32	8	11	46	1.72
16059896--16059929	2	17.0	2	100	0	68	50	0	0	50	1.00
16066462--16066524	30	2.1	31	90	3	101	26	15	11	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16066966--16067095	60	2.1	61	85	4	183	46	14	16	21	1.83
16067445--16067485	17	2.4	17	100	0	82	68	4	0	26	1.10
16073692--16073733	7	6.3	7	94	2	61	88	0	11	0	0.53
16073692--16073729	13	3.0	13	85	14	53	89	0	10	0	0.49
16080159--16080193	18	1.9	18	94	0	61	20	28	37	14	1.91
16091943--16091988	24	1.9	24	100	0	92	10	10	39	39	1.76
16095989--16096030	6	6.5	6	86	13	57	66	0	2	30	1.04
16095989--16096030	13	3.2	13	93	6	68	66	0	2	30	1.04
16099208--16099233	7	3.7	7	100	0	52	15	0	0	84	0.62
16100172--16100207	18	2.0	18	100	0	72	22	5	11	61	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79