Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  79  of  79  ( 9388 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26504484--26505678
263
4.6
262
89
3
1843
25
17
18
38
1.92
26504491--26505678
523
2.3
524
92
1
1956
25
17
18
38
1.92
26510571--26510688
39
3.0
39
100
0
236
38
22
20
17
1.93
26511412--26511515
51
2.0
51
86
0
145
40
17
19
23
1.91
26511313--26511515
45
4.4
46
73
9
162
39
18
20
21
1.92
26514481--26514642
73
2.2
73
87
2
236
26
7
3
62
1.39
26514846--26514894
12
3.9
12
78
7
53
20
6
0
73
1.04
26515253--26515318
32
2.1
32
94
0
114
25
22
13
37
1.91
26519374--26519438
33
2.0
32
85
11
87
52
0
13
33
1.41
26520079--26520189
23
5.1
21
75
9
107
20
19
20
38
1.93
26522814--26522850
9
4.1
9
89
0
56
48
13
8
29
1.71
26523227--26523287
17
3.4
18
78
15
72
22
26
0
50
1.49
26524463--26524559
23
4.2
23
87
0
140
32
23
21
21
1.98
26530830--26530895
32
2.1
32
82
5
80
36
12
9
42
1.74
26534324--26534370
20
2.3
21
78
10
53
61
2
6
29
1.32
26534390--26534469
18
4.4
17
77
12
70
33
3
2
60
1.28
26534369--26534439
18
3.9
17
80
12
72
32
5
1
60
1.29
26534391--26534448
19
3.1
18
78
11
55
32
3
1
62
1.22
26534362--26534448
37
2.3
38
77
14
101
34
4
1
59
1.25
26534789--26534887
46
2.2
45
87
5
137
15
4
21
59
1.52
26538712--26538739
13
2.2
13
100
0
56
64
0
14
21
1.29
26543963--26544036
17
4.0
17
72
17
67
37
1
0
60
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26543969--26544072
39
2.5
40
89
7
147
35
1
0
61
1.14
26543991--26544044
28
1.9
28
81
7
65
35
3
0
61
1.14
26546731--26547033
164
1.8
164
89
0
471
29
17
14
37
1.90
26547561--26547591
16
1.9
16
93
0
53
74
3
0
22
0.96
26553109--26553418
77
4.0
77
91
1
487
30
7
22
39
1.81
26557256--26557297
21
2.0
22
85
4
59
61
2
4
30
1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79

The End!