genome.fa.s7.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  57  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19013883--19013931	20	2.4	20	82	3	53	75	8	4	12	1.16
19024013--19024078	32	2.1	30	83	5	78	53	3	3	40	1.32
19024923--19024958	16	2.2	16	90	0	54	8	8	0	83	0.82
19025222--19025267	23	2.0	22	83	4	56	28	0	4	67	1.10
19028318--19028352	6	5.8	6	93	0	52	51	5	0	42	1.25
19028318--19028352	18	1.9	18	94	0	61	51	5	0	42	1.25
19028901--19028925	13	1.9	13	100	0	50	40	12	8	40	1.72
19032418--19032454	9	4.1	9	92	0	65	29	10	13	45	1.77
19032508--19032538	9	3.4	9	90	0	53	38	22	12	25	1.90
19037720--19037767	24	1.9	24	83	8	60	37	6	16	39	1.74
19043339--19043369	14	2.2	14	94	0	53	16	0	38	45	1.47
19043331--19043403	34	2.1	34	84	0	92	19	4	36	39	1.71
19043386--19043410	7	3.6	7	100	0	50	0	0	56	44	0.99
19045033--19045354	159	2.0	160	99	0	637	38	6	19	34	1.79
19048215--19048432	44	5.0	44	67	14	121	27	22	17	31	1.97
19048519--19049732	44	27.4	42	71	13	626	27	22	18	31	1.97
19048519--19049738	45	27.5	44	74	6	707	26	22	18	32	1.97
19048495--19049738	89	14.0	89	87	1	1694	27	22	18	32	1.97
19057816--19057855	20	2.0	20	95	0	71	32	15	22	30	1.94
19061147--19061189	2	21.5	2	100	0	86	51	0	0	48	1.00
19064928--19064967	17	2.3	16	87	12	53	72	12	0	15	1.12
19066082--19066162	3	27.0	3	83	0	72	27	2	7	62	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19066118--19066178	18	3.5	17	77	22	56	36	4	1	57	1.30
19084003--19084033	16	1.9	16	93	0	53	22	12	22	41	1.88
19088579--19088694	41	2.8	40	84	5	133	30	18	21	29	1.97
19089681--19089723	21	2.0	20	83	16	52	30	11	16	41	1.83
19089954--19090072	47	2.6	46	80	6	143	40	17	24	17	1.91
19091019--19091066	24	2.0	24	84	8	62	33	8	27	31	1.86
19091394--19092826	123	11.0	123	70	11	864	30	15	24	28	1.96
19091613--19091682	36	1.9	36	88	5	106	28	20	21	30	1.98
19091740--19091779	21	1.9	21	89	0	62	37	5	32	25	1.77
19091372--19092826	261	5.6	260	86	1	1998	30	15	24	28	1.96
19091761--19091912	51	3.0	51	79	0	169	28	16	25	29	1.97
19091874--19091947	36	2.1	36	84	0	94	28	20	20	31	1.97
19091823--19091998	87	2.0	87	84	0	226	28	17	22	31	1.97
19091910--19092022	51	2.2	51	84	3	147	32	15	21	30	1.95
19092025--19092166	51	2.8	51	75	0	158	28	17	26	27	1.98
19092171--19092283	51	2.2	52	90	3	176	33	13	23	30	1.92
19092292--19092434	51	2.8	51	78	4	162	29	18	23	28	1.98
19091372--19092817	522	2.8	522	90	0	2214	30	16	24	29	1.96
19092345--19092520	87	2.0	87	88	2	264	27	17	23	31	1.97
19092657--19092730	36	2.1	36	86	0	103	24	20	22	32	1.98
19092606--19092781	87	2.0	87	85	2	237	27	17	23	31	1.97
19092693--19092805	51	2.2	52	90	3	176	31	15	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19093444--19093536	3	31.0	3	88	0	78	24	1	10	63	1.33
19098378--19098412	19	1.9	17	88	11	52	74	0	5	20	1.02
19098378--19098413	18	1.9	19	88	5	56	75	0	5	19	1.00
19102145--19102193	9	5.4	9	87	0	62	44	22	6	26	1.76
19102304--19102343	18	2.2	18	86	0	53	12	2	45	40	1.56
19106905--19106947	21	2.1	21	87	8	63	44	37	4	13	1.65
19106981--19107018	13	2.8	14	84	4	51	26	7	26	39	1.83
19112865--19113060	105	1.9	101	82	8	243	33	14	23	28	1.94
19113749--19113844	33	3.2	32	67	27	91	43	15	9	31	1.78
19115088--19115182	42	2.3	42	85	5	122	44	9	5	41	1.59
19118531--19118567	2	18.5	2	94	0	65	48	0	2	48	1.15
19119177--19119210	11	3.0	11	83	8	50	79	2	2	14	0.97
19120246--19121276	88	11.8	88	92	1	1597	25	24	22	27	2.00
19120261--19121276	350	2.9	353	91	1	1632	25	25	22	27	2.00
19123055--19123101	21	2.2	21	88	0	67	25	38	10	25	1.88
19123195--19123231	8	4.6	8	96	0	65	13	8	0	78	0.96
19124026--19124058	13	2.5	13	90	9	50	0	15	0	84	0.61
19124027--19124066	19	2.1	19	85	0	53	2	15	0	82	0.77
19124070--19124158	9	10.3	9	84	15	102	10	0	10	79	0.93
19124070--19124148	29	3.0	27	84	13	103	8	0	11	79	0.93
19124082--19124162	36	2.2	36	89	10	121	11	0	9	79	0.95
19124082--19124140	20	3.1	20	92	7	97	8	0	10	81	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19131564--19131676	44	2.6	44	88	2	147	28	19	20	31	1.97
19131593--19131681	44	2.0	44	97	0	169	25	19	22	32	1.97
19131904--19132285	50	7.7	49	74	6	165	23	20	23	32	1.98
19131904--19133041	100	11.4	99	82	3	1162	24	21	22	31	1.98
19132106--19133028	50	18.6	49	75	8	751	24	21	21	31	1.98
19131926--19133041	298	3.7	298	87	2	1447	24	21	22	31	1.98
19133046--19133220	44	4.0	44	71	10	133	22	22	26	28	1.99
19135650--19135680	12	2.7	11	90	9	53	0	0	9	90	0.46
19140009--19140042	11	3.0	11	83	8	50	79	2	2	14	0.97
19147948--19148204	132	2.0	133	80	5	299	35	28	2	33	1.72
19148136--19148269	68	1.9	69	80	3	153	37	26	2	32	1.72
19148236--19148517	122	2.3	121	84	7	351	39	20	3	36	1.72
19148286--19148516	63	3.7	62	73	6	218	38	21	3	36	1.72
19148651--19148802	67	2.4	62	79	6	160	37	19	4	38	1.73
19148812--19148856	23	2.0	23	86	0	63	44	17	2	35	1.62
19149096--19149244	60	2.5	57	73	9	147	37	19	4	38	1.71
19149382--19149645	71	3.8	71	83	5	308	34	26	3	36	1.72
19149132--19149713	61	9.0	66	76	8	414	34	26	3	35	1.75
19149192--19149720	65	8.1	65	73	11	237	35	26	3	34	1.74
19149096--19149740	126	5.1	127	78	10	493	35	25	3	35	1.74
19149129--19149708	200	3.0	193	78	8	493	35	26	3	35	1.75
19151605--19151646	3	13.7	3	90	5	66	33	2	0	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19151608--19151643	19	1.9	19	94	5	65	33	2	0	63	1.08
19151882--19151922	10	4.1	10	79	20	50	41	0	0	58	0.98
19152414--19152555	72	2.0	72	92	0	239	27	17	19	35	1.94
19158013--19158493	238	2.0	238	95	0	865	34	19	24	22	1.96
19164765--19165882	50	22.3	50	76	4	797	33	20	19	27	1.97
19164765--19165786	100	10.2	100	87	1	1330	33	20	19	26	1.97
19164770--19165804	150	6.9	150	79	3	956	32	20	19	27	1.97
19165992--19166254	132	2.0	132	90	1	411	29	17	25	26	1.98
19166414--19166522	44	2.5	44	83	0	119	32	17	20	30	1.95
19168798--19168940	73	2.0	73	91	0	232	30	18	13	37	1.90
19170195--19170244	25	2.0	25	100	0	100	28	28	4	40	1.74
19171529--19171707	89	2.0	90	98	1	351	39	14	2	43	1.58
19178027--19178094	31	2.2	31	83	0	91	47	16	8	27	1.76
19179607--19179632	7	3.7	7	100	0	52	42	0	0	57	0.98
19187902--19187961	29	2.0	30	81	9	70	48	0	5	46	1.24
19192127--19192151	13	1.9	13	100	0	50	0	0	8	92	0.40
19194387--19194431	23	2.0	23	86	0	63	37	2	0	60	1.09
19194704--19194747	19	2.3	20	84	11	65	61	0	2	36	1.09
19194711--19194746	18	1.9	19	94	5	65	61	0	2	36	1.11
19195754--19195794	3	13.7	3	100	0	82	68	0	0	31	0.90
19204238--19204338	27	3.7	27	79	0	112	30	11	40	16	1.85
19204221--19204338	54	2.2	54	76	3	130	29	15	38	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19207831--19207880	21	2.4	22	80	16	61	28	2	4	66	1.21
19207847--19207891	21	2.2	20	84	11	56	35	2	4	57	1.31
19210028--19210084	27	2.1	27	86	0	78	29	21	22	26	1.99
19211324--19211356	15	2.2	15	100	0	66	42	15	18	24	1.88
19213878--19213934	26	2.3	26	82	11	75	40	0	0	59	0.97
19213914--19213956	10	4.6	10	77	16	56	30	2	0	67	1.03
19215249--19215292	20	2.2	20	84	8	54	63	4	0	31	1.14
19219902--19220140	112	2.1	112	96	2	433	40	7	9	42	1.67
19223332--19223738	138	2.9	138	89	0	627	30	23	23	22	1.99
19226434--19226467	11	2.9	12	86	8	52	85	0	11	2	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79