genome.fa.s7.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  52  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17619130--17619409	125	2.2	124	82	6	327	29	18	17	34	1.94
17619713--17619780	16	4.3	15	74	18	57	51	32	2	13	1.56
17619715--17619949	7	32.4	7	68	13	93	44	33	1	20	1.60
17620089--17620162	7	10.6	7	79	5	87	45	27	1	25	1.61
17622389--17622697	146	2.1	146	100	0	618	25	9	10	54	1.65
17629245--17629277	14	2.3	15	89	5	50	81	3	0	15	0.80
17629760--17629807	22	2.2	22	88	3	71	43	2	10	43	1.50
17638001--17638055	25	2.2	26	81	15	71	23	9	16	50	1.73
17639124--17639442	46	7.1	46	76	7	233	34	3	23	37	1.73
17639081--17639431	23	15.6	23	71	11	199	33	3	23	39	1.71
17639977--17640003	5	5.4	5	100	0	54	0	18	0	81	0.69
17641354--17641604	27	9.3	27	81	2	272	17	17	20	44	1.87
17641354--17641582	107	2.1	107	84	4	291	17	18	20	44	1.87
17641357--17641604	81	3.1	81	85	1	327	18	17	20	44	1.87
17642243--17642311	34	2.0	34	86	5	95	47	14	27	10	1.76
17645977--17646031	16	3.4	16	94	0	101	29	27	7	36	1.84
17655482--17655530	22	2.1	23	88	7	73	30	22	4	42	1.72
17658087--17658125	12	3.3	12	78	7	53	53	7	0	38	1.30
17658076--17658132	23	2.4	23	97	2	105	56	8	0	35	1.31
17658770--17659999	132	9.3	132	97	0	2194	31	18	20	29	1.97
17659720--17659911	44	4.4	44	70	2	152	28	18	22	30	1.97
17660229--17660304	21	3.7	21	91	3	120	36	10	13	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17660641--17660682	3	14.0	3	89	0	66	30	2	2	64	1.19
17660818--17660850	17	1.9	17	93	0	57	36	12	0	51	1.39
17662469--17662498	15	2.0	15	93	0	51	23	6	6	63	1.43
17670770--17670799	2	15.5	2	93	6	53	46	0	0	53	1.00
17673521--17673661	46	3.1	46	90	1	230	34	4	22	37	1.76
17673535--17673662	23	5.6	23	80	9	163	35	3	22	38	1.73
17675711--17675803	44	2.1	44	84	15	120	36	25	4	33	1.76
17675784--17675855	16	4.5	16	89	0	99	33	25	6	34	1.83
17680199--17680271	29	2.5	29	93	0	119	52	9	12	26	1.69
17682361--17682810	225	2.0	225	100	0	900	17	18	23	40	1.91
17684902--17685544	319	2.0	319	98	0	1259	33	11	19	35	1.88
17687387--17687429	23	1.9	23	81	13	54	48	4	2	44	1.36
17698606--17699042	218	2.0	219	99	0	867	33	13	8	44	1.75
17699591--17699640	19	2.5	20	74	6	57	24	4	8	64	1.38
17700352--17700475	60	2.0	61	98	1	241	62	1	16	19	1.40
17706413--17706450	20	1.9	20	89	10	60	55	5	2	36	1.37
17707385--17707484	51	2.0	51	90	4	157	46	3	25	26	1.67
17707444--17707520	11	7.1	10	76	13	57	48	1	25	24	1.59
17707444--17707518	33	2.2	34	83	9	100	46	1	26	25	1.61
17707465--17707518	22	2.4	23	87	6	83	46	1	27	24	1.63
17710951--17711028	39	2.0	39	100	0	156	43	2	23	30	1.67
17713930--17713994	31	2.1	31	85	8	87	55	10	10	23	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17714001--17714065	30	2.2	30	100	0	130	30	20	10	38	1.86
17716993--17717033	21	2.0	21	90	0	64	48	21	12	17	1.79
17726885--17726924	18	2.2	18	86	0	53	42	2	20	35	1.65
17731247--17731343	46	2.1	46	92	0	158	41	11	19	27	1.86
17732865--17732908	21	2.1	21	83	8	54	31	2	4	61	1.28
17733224--17733264	3	13.7	3	100	0	82	68	0	0	31	0.90
17734623--17734688	25	2.4	27	80	14	73	18	4	4	72	1.19
17746947--17747039	8	11.4	8	82	8	89	46	1	0	52	1.07
17746951--17747025	20	3.8	20	81	15	93	48	1	0	50	1.09
17746948--17747040	28	3.2	28	87	4	123	47	1	0	51	1.07
17748134--17748193	25	2.6	24	78	17	65	40	0	21	38	1.54
17748139--17748219	19	4.3	19	75	18	71	39	1	20	38	1.61
17748556--17748655	45	2.2	45	82	7	123	23	16	18	43	1.88
17755508--17755585	21	3.7	21	82	0	93	50	15	17	16	1.79
17755508--17755590	42	2.0	42	83	4	105	49	14	19	16	1.80
17759619--17759665	19	2.5	19	86	6	60	25	21	10	42	1.85
17763867--17764150	44	6.5	44	64	14	129	29	17	27	26	1.98
17763843--17764149	132	2.3	132	88	0	452	28	18	26	26	1.98
17764217--17764322	44	2.4	44	81	4	135	31	18	24	25	1.98
17765927--17765972	3	15.3	3	95	0	83	32	2	0	65	1.05
17766848--17767271	211	2.0	212	99	0	841	37	14	14	33	1.86
17767780--17767837	6	8.8	6	77	20	55	18	3	1	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17773999--17774038	16	2.5	16	88	8	55	37	0	2	60	1.11
17782704--17782737	17	2.0	17	100	0	68	29	17	23	29	1.97
17797014--17797050	20	2.0	20	89	10	60	43	5	10	40	1.63
17799583--17799701	57	2.1	58	88	1	177	43	3	4	48	1.38
17799588--17799721	57	2.4	56	82	8	155	42	2	5	49	1.40
17805520--17805549	15	1.9	16	93	6	53	23	13	0	63	1.29
17805666--17805699	14	2.4	14	90	0	50	14	0	2	82	0.79
17809682--17809737	17	3.1	17	77	20	60	67	0	32	0	0.91
17809801--17809890	17	5.5	16	78	12	78	77	0	22	0	0.76
17809798--17809864	20	3.5	20	83	15	81	76	0	23	0	0.79
17809798--17809880	27	3.1	26	76	11	87	77	0	22	0	0.78
17809817--17809890	6	12.5	6	78	13	82	81	0	18	0	0.70
17809817--17809891	36	2.0	38	87	7	109	81	0	18	0	0.69
17809816--17809891	10	7.7	10	72	8	66	80	0	19	0	0.72
17809958--17810011	19	2.8	20	83	13	60	29	42	27	0	1.56
17809961--17810016	23	2.7	20	81	13	69	30	41	28	0	1.57
17818119--17818158	6	6.7	6	83	11	55	77	0	5	17	0.94
17820316--17820428	54	2.1	54	96	0	208	24	12	14	48	1.78
17820320--17820415	30	3.4	30	66	21	80	26	11	16	45	1.81
17822722--17822759	19	2.0	19	85	10	51	60	0	15	23	1.35
17822762--17822805	15	2.9	15	83	10	54	50	9	0	40	1.34
17822894--17822935	18	2.5	17	85	11	59	76	2	4	16	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17822895--17822955	24	2.6	23	82	10	70	75	3	4	16	1.11
17822894--17822951	16	3.5	16	84	11	73	74	3	5	17	1.15
17822895--17822955	7	7.9	7	75	15	50	75	3	4	16	1.11
17823171--17823202	14	2.3	14	94	0	55	75	3	0	21	0.95
17826694--17826894	100	2.0	101	99	0	395	31	20	13	33	1.92
17830222--17830256	4	8.8	4	87	0	52	20	2	2	74	1.08
17838081--17838378	101	3.0	99	91	5	478	35	11	26	26	1.90
17840156--17840198	19	2.3	19	84	8	52	34	2	6	55	1.39
17840206--17840264	18	3.2	18	79	18	59	32	5	6	55	1.48
17842145--17842197	26	2.0	28	82	10	67	43	15	3	37	1.64
17847554--17847966	88	4.7	88	91	0	664	28	28	23	19	1.98
17847568--17847794	43	5.2	44	65	8	129	26	29	24	18	1.98
17847628--17847772	45	3.3	44	65	3	103	28	27	26	17	1.98
17847964--17848293	44	7.6	44	68	4	229	28	21	23	26	1.99
17847856--17848301	87	5.1	87	87	1	556	28	23	24	23	2.00
17848012--17848237	43	5.2	43	66	6	159	26	25	23	24	2.00
17848310--17848413	44	2.4	44	80	3	111	31	21	18	28	1.96
17849692--17849736	24	1.9	24	90	4	74	26	6	0	66	1.16
17849692--17849734	11	3.7	11	79	11	50	25	4	0	69	1.07
17849899--17849941	19	2.3	19	84	8	52	34	2	6	55	1.39
17849964--17850009	18	2.6	18	82	0	56	32	4	4	58	1.37
17855255--17855628	7	53.7	7	70	12	137	45	33	0	20	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17855256--17855628	21	17.9	21	69	12	155	45	33	0	20	1.55
17855382--17855506	22	5.9	22	68	21	63	44	33	0	22	1.53
17855493--17855559	20	3.3	20	89	2	98	53	29	0	16	1.43
17855793--17855834	21	2.0	21	82	17	52	45	35	0	19	1.50
17857912--17857985	37	2.0	37	100	0	148	37	10	8	43	1.69
17858598--17858690	39	2.5	37	80	7	98	27	29	22	20	1.98
17858802--17858830	13	2.3	13	94	5	51	31	3	20	44	1.68
17860233--17860284	19	2.7	19	71	14	52	34	0	13	51	1.41
17860759--17860903	41	3.5	41	88	4	213	24	16	26	32	1.96
17860882--17860985	41	2.5	42	92	3	167	26	19	30	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79