genome.fa.s7.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  53  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17860758--17860944	82	2.3	83	80	10	199	25	17	26	30	1.97
17863007--17863034	12	2.3	12	100	0	56	60	0	7	32	1.24
17869082--17869115	15	2.3	15	100	0	68	32	0	38	29	1.58
17872071--17872111	20	2.0	20	100	0	82	41	9	14	34	1.79
17872907--17872959	20	2.8	18	78	18	54	58	0	0	41	0.98
17872906--17872965	32	1.9	31	90	6	95	58	0	0	41	0.98
17872955--17873006	18	2.9	17	75	11	50	61	3	1	32	1.25
17872906--17873004	37	2.9	33	80	15	89	58	2	1	38	1.16
17874087--17874149	30	2.1	31	93	3	110	28	25	6	39	1.80
17874099--17874144	15	3.0	16	68	12	51	26	26	6	41	1.80
17878451--17878504	27	2.0	27	89	7	83	24	27	14	33	1.94
17878705--17878764	30	2.0	31	86	3	86	25	18	6	50	1.71
17882844--17882960	45	2.6	45	87	0	153	29	18	23	28	1.98
17883156--17883196	20	2.0	21	90	4	66	70	17	0	12	1.16
17887873--17888007	57	2.3	57	82	10	164	31	21	23	22	1.98
17889263--17889489	116	2.0	116	98	0	436	22	29	14	34	1.93
17892035--17892064	3	10.0	3	92	0	51	63	0	36	0	0.95
17892333--17892470	37	3.7	37	70	13	111	31	5	12	51	1.61
17892286--17892514	76	2.9	79	76	10	245	33	4	12	49	1.62
17892286--17892506	40	5.6	41	70	17	132	33	4	11	49	1.61
17895144--17895179	16	2.3	16	90	4	56	16	2	25	55	1.55
17897429--17898319	154	6.0	153	87	6	1185	29	10	9	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17897964--17897999	8	4.2	8	86	13	54	27	2	0	69	1.02
17898045--17898313	131	2.1	130	85	4	364	28	12	10	48	1.73
17898750--17898804	5	11.0	5	76	7	58	0	32	0	67	0.91
17898744--17898804	20	3.0	20	87	0	86	0	32	0	67	0.91
17898743--17898810	19	3.5	20	75	16	70	0	33	0	66	0.92
17899580--17899810	96	2.4	96	93	2	392	38	1	19	39	1.62
17902164--17902237	34	2.2	33	90	4	112	45	6	5	41	1.53
17902353--17902404	21	2.6	20	77	14	54	3	19	42	34	1.69
17902640--17902682	18	2.4	18	84	0	50	46	9	25	18	1.79
17903330--17903361	7	4.6	7	100	0	64	56	15	0	28	1.40
17904530--17904583	11	4.9	11	78	15	58	44	0	29	25	1.54
17905713--17905768	16	3.5	16	79	13	62	46	5	16	32	1.69
17905946--17906056	57	1.9	58	90	1	179	53	4	0	42	1.21
17907223--17907296	37	2.0	36	94	2	130	35	9	16	39	1.81
17910319--17910435	40	2.9	40	97	0	216	34	23	21	21	1.97
17910486--17910613	41	3.1	41	93	2	220	17	21	33	26	1.96
17910492--17910613	42	2.9	42	95	1	219	18	21	33	27	1.96
17913586--17913785	107	1.9	107	86	2	285	32	16	17	33	1.92
17918720--17918807	44	2.0	44	97	0	167	39	29	5	25	1.78
17919916--17919957	20	2.0	21	90	4	68	19	2	4	73	1.12
17921995--17922055	31	1.9	33	86	6	90	60	8	6	24	1.49
17931417--17931478	31	2.1	30	82	17	76	29	14	8	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17931686--17931761	25	3.0	24	75	21	75	38	22	18	21	1.94
17932259--17932289	9	3.4	9	100	0	62	41	19	0	38	1.51
17940320--17940352	11	3.1	11	86	8	50	30	0	33	36	1.58
17940322--17940363	21	2.0	21	90	0	66	35	0	23	40	1.55
17940726--17940773	25	2.0	25	91	4	80	16	27	18	37	1.92
17943104--17943154	22	2.3	22	81	18	61	60	5	5	27	1.43
17946894--17946933	18	2.2	19	86	13	57	5	37	0	57	1.21
17961274--17961309	13	2.7	13	95	4	63	50	0	16	33	1.46
17962090--17962132	18	2.4	18	76	0	50	58	2	0	39	1.11
17962479--17962512	6	5.5	6	96	3	59	2	14	0	82	0.79
17967043--17967076	16	2.1	16	94	0	59	11	35	0	52	1.38
17968203--17968845	321	2.0	321	97	0	1214	29	13	17	39	1.88
17969492--17969531	20	2.0	20	85	0	53	50	15	10	25	1.74
17970666--17970739	28	2.7	28	74	15	75	48	1	0	50	1.09
17978302--17979056	376	2.0	376	98	0	1467	40	17	14	27	1.89
17980201--17980253	25	2.1	25	82	6	63	28	1	16	52	1.54
17984216--17984283	31	2.2	32	79	12	79	57	2	4	35	1.34
17984435--17984459	2	12.5	2	100	0	50	52	0	0	48	1.00
17999250--17999293	18	2.4	19	92	7	81	72	0	0	27	0.85
18004648--18004705	26	2.2	26	93	0	98	36	12	10	41	1.76
18005151--18005216	35	1.9	34	90	6	107	46	10	7	34	1.67
18011173--18011218	13	3.7	13	77	11	51	54	8	10	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18011724--18011834	53	2.1	53	100	0	222	22	31	8	37	1.83
18015362--18015402	22	1.9	21	85	14	57	53	12	2	31	1.51
18018404--18018428	13	1.9	13	100	0	50	32	4	24	40	1.73
18048937--18048983	17	2.8	17	77	6	51	63	0	8	27	1.23
18050012--18050706	349	2.0	348	98	1	1356	37	7	9	46	1.64
18053559--18053659	12	8.7	12	67	25	56	30	6	2	59	1.39
18053559--18053659	24	4.3	24	69	20	72	30	6	2	59	1.39
18053620--18053655	3	12.0	3	93	0	54	27	0	5	66	1.13
18053625--18053659	18	1.9	18	88	0	52	25	2	5	65	1.28
18058618--18058684	29	2.3	29	89	0	98	44	13	10	31	1.77
18058674--18058776	9	11.4	9	84	4	127	42	22	8	26	1.82
18058872--18058925	18	2.9	18	88	2	81	11	1	48	38	1.50
18059736--18059789	20	2.7	20	85	0	72	44	22	24	9	1.81
18064663--18064700	19	2.0	19	85	10	51	71	0	26	2	1.00
18064674--18064723	24	2.1	24	85	7	66	76	0	20	4	0.95
18066213--18066271	24	2.5	24	80	0	73	20	25	30	23	1.98
18066321--18066393	27	2.7	26	83	10	94	28	17	26	27	1.98
18066864--18066931	28	2.4	28	92	0	109	16	29	23	30	1.96
18071286--18071392	54	2.0	54	88	3	162	37	14	22	25	1.93
18081035--18081081	22	2.1	23	88	4	69	10	8	2	78	1.04
18083780--18083824	19	2.4	19	85	7	56	26	20	8	44	1.80
18087303--18087345	21	2.0	21	100	0	86	48	9	18	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18087989--18088936	89	10.7	89	91	0	1439	31	17	22	27	1.96
18089018--18089114	44	2.2	44	86	0	131	28	19	22	28	1.98
18090359--18090399	21	2.0	21	85	0	55	34	7	0	58	1.26
18102408--18102474	34	1.9	35	87	3	100	49	11	5	32	1.64
18102700--18102750	21	2.5	20	72	18	50	64	3	1	29	1.22
18104229--18104264	18	2.0	18	88	0	54	19	2	8	69	1.27
18105024--18105175	42	3.6	42	77	7	121	19	21	15	43	1.88
18109107--18109146	16	2.7	14	85	11	53	42	5	0	52	1.23
18113889--18113927	18	2.2	17	86	4	51	48	17	7	25	1.74
18115822--18115854	16	2.1	16	100	0	66	39	30	6	24	1.79
18116379--18116404	10	2.6	10	100	0	52	26	0	7	65	1.20
18119470--18119665	88	2.2	87	96	2	340	53	3	6	36	1.43
18123161--18123215	9	5.9	9	75	8	56	30	1	3	63	1.22
18123161--18123286	19	6.8	18	70	15	80	38	1	1	58	1.17
18124288--18124317	14	2.2	13	94	5	51	30	16	0	53	1.44
18124734--18124766	7	4.7	7	92	0	57	45	0	0	54	0.99
18128494--18128521	2	14.0	2	100	0	56	50	0	0	50	1.00
18129422--18129492	36	1.9	37	83	8	92	32	19	2	45	1.65
18129480--18129523	23	1.9	22	82	17	54	38	22	0	38	1.55
18129622--18129696	23	3.3	23	92	0	123	32	24	22	21	1.98
18135571--18135609	19	2.2	17	86	9	51	5	17	2	74	1.12
18135571--18135614	18	2.4	18	85	11	54	4	20	2	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18139560--18139615	29	1.9	29	85	7	78	30	26	30	12	1.93
18140070--18140314	26	9.4	26	77	0	202	22	14	26	37	1.92
18140075--18140299	78	2.9	77	78	2	225	21	14	27	36	1.92
18141386--18141456	22	3.3	22	84	2	90	19	21	40	18	1.91
18149856--18149897	2	21.0	2	100	0	84	50	0	0	50	1.00
18150030--18150067	2	19.0	2	100	0	76	50	0	0	50	1.00
18150236--18150283	17	2.8	17	81	12	53	37	4	2	56	1.30
18156860--18156884	7	3.6	7	100	0	50	24	0	0	76	0.80
18158008--18158318	159	2.0	158	87	1	444	35	14	10	39	1.80
18158701--18159522	310	2.7	308	87	5	1132	35	14	11	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79