genome.fa.s7.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  62  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20293856--20293962	53	2.0	53	96	0	196	34	12	14	39	1.83
20296579--20296619	21	2.0	21	85	0	55	26	2	2	68	1.15
20296981--20297042	32	1.9	33	86	3	90	48	6	3	41	1.45
20305299--20305411	19	5.8	19	88	4	172	38	9	15	36	1.80
20305300--20305405	40	2.7	40	95	2	189	38	10	14	36	1.80
20305543--20305597	24	2.4	22	90	6	83	69	0	30	0	0.89
20306432--20306686	98	2.6	98	100	0	510	26	11	25	36	1.90
20312386--20312451	28	2.3	29	84	5	89	40	1	4	53	1.31
20312848--20312940	37	2.4	36	80	16	107	43	1	23	32	1.61
20312848--20312940	36	2.4	41	78	19	110	43	1	23	32	1.61
20317914--20317953	20	2.0	20	90	0	62	27	10	12	50	1.72
20317893--20317969	14	5.0	15	71	20	52	33	7	15	42	1.76
20317946--20318031	33	2.6	32	73	12	84	25	9	18	46	1.79
20318037--20318116	20	4.0	20	75	12	92	36	3	3	56	1.35
20319166--20319208	17	2.7	15	83	13	59	55	9	11	23	1.64
20320834--20320859	13	2.0	13	100	0	52	46	15	15	23	1.83
20321017--20321046	14	2.1	14	93	0	51	36	10	43	10	1.72
20321069--20321114	24	1.9	24	86	0	65	39	4	41	15	1.67
20326039--20326064	13	2.0	13	100	0	52	53	23	0	23	1.46
20326650--20326680	9	3.4	9	90	0	53	25	12	22	38	1.90
20326734--20326770	9	4.1	9	92	0	65	45	13	10	29	1.77
20327577--20327612	5	7.2	5	100	0	72	19	19	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20333162--20333214	19	2.6	21	70	11	56	50	20	3	24	1.64
20333201--20333265	23	2.5	26	78	14	73	55	21	0	23	1.44
20337537--20337753	99	2.2	98	87	2	301	30	19	12	37	1.89
20337604--20338307	134	5.4	134	79	5	736	31	17	12	39	1.86
20337946--20338167	120	1.9	120	86	0	318	31	15	13	40	1.85
20338226--20338383	35	4.5	35	68	17	92	32	16	12	38	1.86
20338190--20338415	107	2.1	107	90	1	355	32	15	13	39	1.85
20338729--20338753	11	2.3	11	100	0	50	48	0	8	44	1.32
20341104--20341128	2	12.5	2	100	0	50	48	0	0	52	1.00
20358544--20358646	54	1.9	54	84	4	136	32	6	28	33	1.83
20366592--20366626	18	1.9	18	88	0	52	22	20	25	31	1.98
20370040--20370150	56	2.0	57	81	1	134	54	7	11	26	1.62
20386009--20386068	21	2.9	20	73	7	57	40	41	5	13	1.66
20388291--20388421	64	2.1	64	95	1	237	28	6	9	54	1.59
20393839--20393865	4	6.8	4	100	0	54	0	0	22	77	0.76
20394180--20394283	55	1.9	55	85	0	145	25	8	15	50	1.73
20397178--20397219	21	2.0	21	100	0	84	28	28	28	14	1.95
20405409--20405458	21	2.4	21	80	12	59	46	22	0	32	1.52
20405696--20405759	32	2.0	32	93	0	110	40	15	14	29	1.86
20415837--20415998	80	2.0	81	98	1	317	19	18	22	40	1.92
20421455--20421509	22	2.5	23	82	8	69	30	5	0	63	1.17
20421490--20421523	3	11.3	3	87	0	50	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20425595--20425717	64	1.9	64	84	0	165	25	20	17	36	1.94
20425753--20425801	24	2.0	25	88	4	73	22	18	22	36	1.95
20429906--20429969	33	1.9	33	90	0	101	43	4	0	51	1.22
20430962--20430992	2	15.5	2	100	0	62	51	0	48	0	1.00
20446678--20446757	41	2.0	41	84	0	106	50	8	8	32	1.64
20454750--20454788	15	2.6	15	79	0	51	2	53	0	43	1.14
20459484--20459549	17	4.1	16	77	16	73	72	1	24	1	1.01
20459489--20459541	14	3.6	14	76	18	54	73	1	24	0	0.93
20460071--20460109	5	7.8	5	100	0	78	20	17	0	61	1.34
20460659--20460713	21	2.6	21	76	0	56	18	12	32	36	1.88
20463189--20463227	5	7.8	5	83	11	53	79	2	0	17	0.84
20468062--20468217	45	3.5	45	84	3	201	26	17	23	32	1.97
20481345--20481517	85	2.0	87	96	2	323	38	11	14	35	1.82
20482599--20482792	105	1.9	101	81	6	237	33	15	20	29	1.94
20483196--20483247	19	2.7	20	77	14	56	25	7	25	42	1.81
20494240--20494396	37	4.2	37	90	0	224	35	27	17	19	1.95
20494301--20494360	17	3.4	17	66	20	50	35	23	21	20	1.96
20494283--20494343	20	3.2	20	65	21	58	34	29	18	18	1.94
20495139--20495197	19	3.5	19	63	29	51	38	16	10	33	1.83
20495135--20495197	31	2.0	31	100	0	126	42	15	9	31	1.79
20496076--20496100	13	1.9	13	100	0	50	52	0	0	48	1.00
20498741--20498777	15	2.6	14	87	8	56	43	10	8	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20506050--20506113	30	2.2	28	83	5	74	54	0	3	42	1.16
20508432--20508479	18	2.7	18	83	6	62	25	10	16	47	1.78
20512605--20512801	104	1.9	104	89	0	304	24	23	29	21	1.99
20518289--20518368	6	13.8	6	78	12	51	1	26	0	72	0.92
20518301--20518338	20	1.9	20	88	0	58	2	23	0	73	0.95
20518329--20518366	3	12.7	3	100	0	76	0	31	0	68	0.90
20519075--20519375	92	3.0	102	77	14	320	25	21	29	23	1.99
20519931--20519973	23	1.9	22	86	13	61	25	23	13	37	1.92
20528291--20528340	20	2.4	21	83	12	68	60	8	0	32	1.26
20528292--20528419	65	2.0	65	81	6	152	56	3	3	37	1.31
20530044--20530087	18	2.4	19	81	7	56	36	0	4	59	1.18
20534081--20534184	41	2.5	42	84	1	120	28	19	23	28	1.98
20542523--20542560	2	19.5	2	91	5	60	44	0	0	55	0.99
20550215--20550244	15	2.0	15	100	0	60	33	13	13	40	1.83
20557952--20558004	17	3.1	17	88	0	70	11	11	33	43	1.76
20559983--20560014	16	1.9	17	93	6	57	25	9	28	37	1.87
20565086--20565484	43	9.3	43	86	1	518	25	20	25	28	1.99
20565073--20565476	128	3.2	128	86	3	521	25	20	25	28	1.99
20565086--20565484	85	4.7	86	87	2	518	25	20	25	28	1.99
20566914--20566959	17	2.7	17	89	0	74	13	13	32	41	1.82
20583764--20583815	22	2.4	22	83	6	61	23	21	25	30	1.99
20584548--20584585	19	2.0	19	89	0	58	63	5	0	31	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20593042--20593074	16	2.1	16	100	0	66	36	6	6	51	1.51
20596463--20596544	22	3.6	22	71	3	65	24	28	24	23	2.00
20597657--20597857	100	2.0	99	97	0	375	39	18	9	31	1.84
20617062--20617111	22	2.3	22	79	6	57	56	12	16	16	1.68
20620442--20620482	22	1.9	21	85	5	55	19	2	4	73	1.13
20628307--20628476	54	3.1	54	82	0	196	27	23	27	21	1.99
20630113--20630249	74	1.9	73	86	3	195	33	24	4	37	1.75
20644281--20644350	31	2.3	31	97	0	131	45	8	17	28	1.77
20645275--20645309	18	1.9	18	94	0	61	22	2	0	74	0.95
20645263--20645311	14	3.4	15	76	18	50	24	2	2	71	1.07
20648915--20649146	42	5.5	43	76	4	168	24	16	18	40	1.91
20658692--20658736	7	6.6	7	97	2	83	42	0	0	57	0.98
20658751--20658785	17	2.1	17	94	0	61	25	11	11	51	1.71
20659963--20660100	47	2.9	47	82	2	170	44	7	22	25	1.78
20662985--20663011	14	1.9	14	100	0	54	29	29	7	33	1.85
20669780--20669818	18	2.2	18	95	0	69	30	28	7	33	1.85
20677885--20677945	28	2.2	28	91	5	97	32	21	14	31	1.93
20683014--20683066	25	2.1	26	86	10	74	22	28	0	49	1.50
20684182--20684218	14	2.4	16	82	13	51	10	8	2	78	1.06
20684186--20684218	15	2.3	15	89	5	50	9	9	3	78	1.05
20686567--20686617	12	4.1	12	72	18	50	45	1	1	50	1.24
20686572--20686613	21	2.0	21	85	0	57	42	2	2	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20693493--20693522	12	2.5	12	94	0	51	26	36	26	10	1.88
20705528--20705587	28	2.1	28	87	0	84	45	10	15	30	1.78
20715063--20715112	16	3.1	16	100	0	100	26	0	36	38	1.57
20715093--20715183	45	2.0	45	85	2	121	27	6	28	37	1.82
20718576--20719446	76	11.5	76	99	0	1733	42	22	11	23	1.86
20727364--20727392	13	2.2	13	100	0	58	48	13	6	31	1.69
20728345--20728897	84	6.6	84	92	0	910	36	24	17	20	1.94
20731649--20731711	30	2.1	30	82	5	74	41	4	14	39	1.67
20732000--20732071	31	2.3	31	82	0	90	34	9	8	47	1.67
20732198--20732254	29	1.9	30	89	3	89	47	15	8	28	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79