genome.fa.s7.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  35  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12019436--12019507	8	9.4	8	80	11	62	30	1	0	68	0.99
12019653--12019689	19	2.0	20	84	10	51	37	2	0	59	1.12
12036107--12036146	7	5.9	7	88	5	64	42	0	2	55	1.13
12037200--12037255	14	3.5	17	72	18	57	42	0	3	53	1.18
12048834--12048873	20	2.0	21	90	5	64	25	5	0	70	1.08
12048835--12048880	21	2.2	20	84	3	56	26	4	0	69	1.07
12048828--12048898	22	3.2	21	71	11	61	32	2	0	64	1.08
12066738--12066885	49	3.0	49	94	0	260	31	6	22	39	1.79
12074161--12074209	25	1.9	26	91	4	82	42	10	14	32	1.79
12075772--12075811	13	3.0	13	82	17	55	17	0	10	72	1.11
12083246--12083344	43	2.3	43	87	0	144	33	24	17	25	1.96
12092870--12092930	27	2.3	27	88	0	95	40	13	29	16	1.86
12092991--12093032	17	2.6	16	84	3	57	78	0	19	2	0.86
12093006--12093058	20	2.7	18	78	18	52	75	0	18	5	0.99
12094109--12094175	34	1.9	35	87	3	100	44	14	8	31	1.76
12094610--12094696	30	2.9	31	76	11	92	55	6	10	27	1.59
12097823--12097882	32	1.9	31	86	10	86	65	0	3	31	1.09
12100888--12100912	9	2.8	9	100	0	50	44	8	0	48	1.32
12102368--12102413	20	2.3	20	85	7	58	50	19	10	19	1.77
12102968--12103030	33	2.0	33	84	6	85	22	14	4	58	1.54
12103030--12103280	124	2.0	125	97	1	477	28	17	3	50	1.61
12103282--12103309	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12116594--12116736	72	2.0	72	92	0	241	34	18	18	28	1.95
12119258--12119312	26	2.1	26	86	6	76	56	18	7	18	1.64
12121811--12121993	50	3.7	49	78	4	177	26	16	26	29	1.97
12121859--12121989	51	2.6	50	85	1	172	27	19	25	28	1.98
12141734--12141773	20	2.1	19	90	4	62	37	0	0	62	0.95
12141904--12141933	5	5.8	5	96	4	51	76	0	3	20	0.92
12148086--12148119	18	1.9	18	94	5	61	67	0	0	32	0.91
12148145--12148181	9	4.0	9	89	3	56	67	8	2	21	1.29
12150450--12150476	6	4.5	6	100	0	54	18	0	62	18	1.32
12150704--12150758	27	2.0	27	96	0	101	40	7	30	21	1.81
12152744--12153119	160	2.4	157	80	6	443	38	14	12	34	1.85
12153207--12153406	79	2.5	82	90	4	334	27	7	16	49	1.71
12154045--12154089	20	2.2	20	96	0	81	44	17	4	33	1.69
12158003--12158041	17	2.2	18	86	9	53	28	2	2	66	1.18
12160621--12160767	46	3.2	46	74	18	176	46	4	2	47	1.33
12166594--12166893	140	2.1	140	86	1	411	53	6	5	35	1.49
12168478--12168512	15	2.3	15	100	0	70	65	14	0	20	1.26
12170319--12170962	84	7.4	86	69	16	397	27	22	21	28	1.99
12170324--12170878	44	12.7	45	69	17	178	27	22	21	28	1.99
12170319--12170702	173	2.2	173	96	0	705	27	22	21	28	1.99
12170195--12170964	217	3.6	216	77	10	877	27	22	21	28	1.99
12170492--12170964	260	1.8	261	96	0	885	27	22	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12182294--12182331	19	2.0	19	94	0	67	23	18	21	36	1.95
12182927--12183051	50	2.5	50	78	0	133	20	27	22	29	1.99
12184834--12184905	29	2.4	31	79	4	85	51	11	13	23	1.73
12199727--12199751	12	2.1	12	100	0	50	40	0	24	36	1.55
12205320--12205514	37	5.2	37	79	4	178	36	19	15	28	1.92
12205320--12205514	74	2.6	74	82	4	223	36	19	15	28	1.92
12207359--12207417	20	3.0	20	73	9	66	13	27	20	38	1.90
12211036--12211067	15	2.2	15	94	5	57	65	0	3	31	1.08
12238315--12238390	38	2.0	38	92	0	125	31	6	36	25	1.81
12251118--12251156	15	2.8	13	78	14	51	33	12	7	46	1.71
12254775--12254909	44	3.1	43	80	6	137	31	18	22	26	1.97
12254723--12255072	188	1.9	189	87	1	515	31	20	20	28	1.97
12264064--12264165	30	3.2	30	69	15	96	36	4	18	40	1.72
12267940--12267994	21	2.7	21	88	5	87	38	9	14	38	1.78
12267973--12268017	23	2.0	23	91	4	74	35	6	17	40	1.76
12267952--12268020	22	3.2	22	80	13	72	37	5	17	39	1.74
12268221--12268265	23	2.0	23	81	0	54	22	0	15	62	1.33
12270413--12270542	44	3.0	44	83	5	165	26	15	26	31	1.96
12270467--12270570	44	2.4	44	85	3	129	27	15	29	26	1.96
12270671--12275899	44	121.7	44	67	15	1077	28	18	24	28	1.98
12270406--12272360	264	7.5	265	76	9	967	28	18	24	28	1.98
12270976--12271628	342	1.9	332	88	4	970	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12271196--12271650	122	3.6	122	70	14	352	28	18	25	27	1.98
12271538--12271602	34	1.9	34	96	0	121	23	24	24	27	2.00
12271243--12272090	254	3.3	255	85	3	1112	29	18	24	27	1.98
12271497--12271640	78	1.8	78	86	5	211	25	19	27	28	1.99
12270935--12271672	342	2.1	343	82	9	959	28	18	24	28	1.98
12272323--12272472	78	1.9	78	90	2	239	26	19	24	30	1.98
12272321--12273078	298	2.5	298	87	3	1054	27	18	24	28	1.98
12272621--12272767	78	1.9	78	90	2	233	26	18	23	31	1.97
12272621--12273376	386	2.0	386	90	1	1192	28	18	24	28	1.98
12273006--12273156	78	1.9	78	85	5	207	27	17	24	30	1.97
12272963--12273200	122	2.0	122	85	5	329	26	18	26	29	1.98
12273309--12273454	78	1.9	78	89	0	229	25	16	25	32	1.96
12272621--12273516	386	2.3	387	83	6	1110	28	18	24	29	1.98
12272015--12273479	684	2.1	684	91	0	2347	27	18	24	28	1.98
12274000--12274138	34	3.8	34	75	17	143	25	20	26	27	1.99
12274000--12274182	78	2.3	78	86	1	251	25	19	27	27	1.99
12274300--12274420	34	3.3	34	66	24	91	28	22	19	28	1.98
12274256--12274483	78	2.9	77	85	2	278	27	18	24	29	1.98
12273654--12275089	386	3.7	386	79	9	1669	27	18	25	28	1.98
12274717--12274869	78	2.0	78	86	2	218	26	17	24	31	1.97
12274673--12274907	122	1.9	122	84	1	310	25	18	24	30	1.98
12274720--12275765	298	3.5	295	81	8	1209	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12275062--12275128	34	1.9	35	84	3	91	28	19	23	28	1.98
12275018--12275167	78	1.9	78	86	2	212	26	16	25	31	1.97
12272015--12276057	342	11.8	341	69	13	1668	28	18	24	28	1.98
12275396--12275465	34	2.1	34	91	0	113	22	18	27	31	1.97
12275314--12275534	122	1.8	122	83	9	299	25	19	24	30	1.98
12275659--12275895	122	1.9	122	85	3	325	25	18	26	28	1.98
12276571--12278800	44	51.8	44	69	14	858	26	19	25	28	1.98
12276798--12277348	88	6.3	88	92	1	944	23	19	26	30	1.98
12277322--12277386	34	1.9	34	93	0	112	23	26	23	27	2.00
12277278--12277430	78	2.0	78	85	2	209	25	22	24	27	2.00
12277285--12280970	298	12.4	297	73	11	1384	28	18	24	28	1.98
12277579--12278835	342	3.7	341	75	8	1140	27	18	24	29	1.98
12277920--12278064	78	1.9	78	94	2	256	24	20	26	28	1.99
12277877--12278096	122	1.8	122	81	7	277	26	20	23	29	1.99
12278262--12278416	78	2.0	79	80	3	179	29	17	23	29	1.97
12278219--12278456	122	2.0	122	82	3	291	26	18	25	29	1.98
12278775--12278899	64	2.0	64	93	0	214	32	19	21	26	1.97
12278968--12279937	44	22.7	44	69	13	374	27	18	25	28	1.98
12279354--12279503	78	1.9	78	87	2	221	25	18	26	30	1.98
12277877--12280009	386	5.5	385	75	11	1255	28	18	24	28	1.98
12279737--12279889	78	2.0	78	84	2	200	28	17	22	31	1.97
12279693--12279933	122	2.0	122	80	1	277	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12279811--12279975	44	3.8	44	82	1	125	27	18	23	30	1.97
12279370--12280109	386	1.9	386	87	1	1079	28	17	24	29	1.98
12278836--12280386	684	2.3	684	88	0	2280	28	18	24	29	1.98
12280108--12280213	44	2.4	44	84	3	133	23	16	21	37	1.93
12280038--12280187	78	1.9	78	83	2	194	26	16	24	32	1.96
12280334--12280928	44	13.7	43	69	11	207	28	18	24	28	1.98
12280116--12280616	221	2.3	221	90	1	765	27	17	23	30	1.97
12280557--12280707	78	1.9	79	89	4	234	25	18	25	30	1.98
12279834--12280917	520	2.1	519	88	1	1634	28	18	24	28	1.98
12281265--12289121	44	183.9	44	66	16	1111	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79