genome.fa.s7.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  58  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19226435--19226469	18	1.9	18	88	0	52	85	0	11	2	0.69
19227303--19227340	14	2.8	14	81	18	53	21	0	0	78	0.74
19230922--19231746	2	412.5	2	99	0	1641	0	49	0	50	1.00
19233054--19233085	10	3.1	10	95	4	55	28	0	3	68	1.04
19237757--19237829	19	3.9	19	74	10	62	80	10	5	2	0.97
19237752--19237829	31	2.5	31	80	17	90	78	11	6	3	1.07
19237771--19237828	25	2.4	23	83	13	73	81	8	6	3	0.98
19237769--19237817	13	3.9	12	76	7	53	81	8	6	4	0.97
19238342--19238379	15	2.7	14	88	8	51	65	0	21	13	1.26
19238333--19238377	22	2.0	23	83	12	58	64	0	20	15	1.29
19239666--19239805	45	3.2	45	65	4	122	30	20	25	24	1.98
19239634--19239837	88	2.3	88	93	0	336	25	22	27	25	2.00
19239829--19240545	100	7.2	100	90	0	1114	30	22	24	21	1.99
19245189--19245242	20	2.6	20	85	5	63	62	0	1	35	1.06
19245291--19245329	20	2.0	20	89	0	60	28	17	17	35	1.94
19252303--19252337	17	2.0	18	88	5	54	40	2	0	57	1.14
19253816--19253874	29	2.1	29	81	15	70	25	3	16	54	1.58
19257677--19258055	125	3.0	125	89	3	564	30	16	21	32	1.95
19261650--19261735	43	2.0	45	88	4	131	50	11	0	38	1.39
19263748--19263934	94	2.0	94	94	0	329	43	16	5	34	1.71
19264097--19264129	10	3.0	11	86	13	50	45	0	36	18	1.49
19268864--19269070	107	1.9	107	99	0	405	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19270135--19270177	3	14.7	3	90	4	70	69	2	0	27	1.00
19270769--19270802	2	17.0	2	87	0	50	52	2	0	44	1.16
19274038--19274080	22	2.0	22	86	9	61	60	11	9	18	1.57
19274046--19274124	22	3.6	22	77	0	77	64	11	10	13	1.50
19284517--19284585	35	2.0	35	97	0	129	27	7	14	50	1.69
19287377--19287413	11	3.4	11	84	0	56	40	0	16	43	1.48
19291391--19291432	21	2.0	20	82	13	50	42	4	4	47	1.45
19291891--19291935	3	15.0	3	100	0	90	66	0	0	33	0.92
19292050--19292096	25	1.9	24	86	4	67	61	2	2	34	1.20
19293657--19293741	41	2.1	41	88	0	125	25	27	17	29	1.98
19300683--19300832	41	3.7	41	88	0	219	24	26	19	30	1.98
19301239--19301271	12	2.8	12	90	4	50	51	9	3	36	1.49
19301176--19301493	110	2.9	112	95	1	577	40	14	2	41	1.61
19302471--19302495	13	1.9	13	100	0	50	68	24	0	8	1.16
19305187--19305229	22	2.0	22	90	0	68	11	20	25	41	1.86
19305388--19305512	43	2.9	42	80	7	135	22	19	24	33	1.97
19305523--19305678	43	3.6	44	75	3	156	26	32	19	21	1.97
19305776--19305822	16	2.9	16	77	17	53	65	6	0	27	1.16
19305776--19305816	9	4.7	9	77	17	50	65	4	0	29	1.13
19305984--19306076	21	4.4	21	80	0	105	6	43	16	34	1.73
19305984--19306085	42	2.4	42	85	0	123	6	42	15	35	1.74
19306024--19306096	21	3.5	21	81	3	76	6	39	17	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19306067--19306213	66	2.2	66	83	4	172	14	28	15	40	1.87
19306106--19306236	66	2.0	66	81	3	156	16	24	17	41	1.89
19318965--19319287	41	7.8	41	83	2	351	32	26	25	15	1.96
19318925--19319287	82	4.4	82	79	4	363	32	25	25	16	1.96
19319336--19319462	40	3.2	39	76	5	112	18	25	21	35	1.95
19319349--19319623	141	2.0	141	97	0	514	21	27	19	32	1.97
19321227--19321285	27	2.2	27	93	0	100	18	32	25	23	1.97
19321993--19322055	27	2.3	27	94	0	108	20	26	31	20	1.98
19332947--19333015	26	2.7	26	95	4	122	44	8	0	46	1.34
19333073--19333151	27	2.9	27	86	0	113	27	27	29	15	1.96
19333252--19333292	11	3.8	11	87	6	66	70	0	29	0	0.87
19333315--19333353	19	2.0	21	85	10	55	23	0	10	66	1.22
19333399--19333433	3	11.3	3	87	6	52	31	0	5	62	1.18
19340866--19340903	19	2.0	19	85	10	51	60	7	0	31	1.25
19340915--19341031	33	3.4	32	75	21	103	0	30	0	69	0.89
19340916--19341100	38	4.9	37	76	15	152	0	32	0	67	0.91
19340937--19341075	44	3.3	43	77	15	157	0	30	0	69	0.89
19340970--19341119	4	37.0	4	72	16	96	0	33	0	66	0.92
19340921--19341071	26	5.7	28	70	20	85	0	31	0	68	0.90
19341041--19341128	20	4.3	22	74	20	84	0	40	0	59	0.98
19340922--19341119	82	2.4	84	83	10	236	0	33	0	66	0.92
19340905--19341122	72	3.0	70	72	16	180	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19363080--19363105	11	2.4	11	100	0	52	38	0	7	53	1.30
19363099--19363154	23	2.3	24	79	14	62	50	1	0	48	1.11
19366234--19366374	72	2.0	72	91	2	230	41	14	15	28	1.87
19370348--19370372	13	1.9	13	100	0	50	88	0	0	12	0.53
19371991--19372018	9	3.1	9	100	0	56	78	0	0	21	0.75
19387451--19387511	31	2.0	31	83	0	77	18	13	9	59	1.61
19388805--19388833	2	14.5	2	100	0	58	48	0	51	0	1.00
19390077--19390116	21	1.9	21	84	0	53	47	5	2	45	1.38
19390275--19390328	29	1.9	27	81	7	63	35	5	3	55	1.41
19390628--19390721	34	2.7	33	83	8	116	41	0	17	41	1.49
19390821--19391367	126	4.2	126	77	10	547	39	15	17	27	1.90
19391095--19391134	20	2.0	20	95	0	71	62	0	15	22	1.32
19390969--19391261	147	2.0	146	89	2	453	43	15	16	25	1.86
19390843--19391367	273	1.9	272	85	1	719	40	15	17	26	1.89
19393289--19393409	42	2.9	42	87	0	170	17	22	16	43	1.87
19393323--19393386	21	3.0	21	72	0	65	18	25	14	42	1.88
19396591--19396818	40	5.7	40	86	0	321	31	21	16	30	1.95
19396591--19396818	80	2.8	80	91	0	357	31	21	16	30	1.95
19397229--19397274	20	2.3	20	78	14	51	8	6	8	76	1.17
19400798--19400891	34	2.7	33	83	8	116	41	0	17	41	1.49
19401118--19401527	126	3.3	126	86	2	572	39	16	17	27	1.91
19400991--19401527	253	2.1	257	83	4	672	38	16	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19403422--19403555	42	3.2	42	82	2	144	16	25	16	41	1.88
19403458--19403555	21	4.7	21	81	5	108	16	26	16	40	1.89
19403458--19403576	63	1.9	63	85	3	168	15	24	17	42	1.89
19407912--19407946	18	1.9	18	88	0	52	42	5	22	28	1.76
19408617--19408642	5	5.2	5	100	0	52	38	19	19	23	1.93
19408591--19408642	26	2.0	26	81	7	61	34	15	26	23	1.94
19409259--19409299	21	2.0	21	85	9	57	43	0	34	21	1.53
19409337--19409373	9	4.1	9	85	0	56	29	8	13	48	1.71
19417378--19417407	1	30.0	1	100	0	60	0	0	0	100	0.00
19428887--19428911	6	4.2	6	100	0	50	16	0	48	36	1.46
19434228--19434252	12	2.1	12	100	0	50	32	12	8	48	1.69
19442636--19442660	13	1.9	13	100	0	50	24	12	32	32	1.91
19455527--19455587	25	2.4	25	83	0	77	19	27	24	27	1.99
19468713--19470423	855	2.0	855	100	0	3422	30	15	17	36	1.91
19488274--19488332	31	1.9	31	89	0	91	27	13	10	49	1.74
19496881--19496965	3	27.7	3	76	15	68	65	2	5	25	1.27
19499163--19499279	58	2.0	58	96	0	216	24	12	27	35	1.92
19500860--19500887	6	4.7	6	100	0	56	28	53	0	17	1.44
19506603--19506724	61	2.0	61	100	0	244	18	27	13	40	1.87
19514107--19514135	2	15.0	2	92	7	51	51	0	0	48	1.00
19515312--19515346	2	17.5	2	100	0	70	51	0	0	48	1.00
19517099--19517241	71	2.0	72	98	1	279	56	5	4	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19517113--19517224	31	3.3	31	65	23	82	61	5	3	29	1.35
19526309--19526390	21	3.9	21	80	4	85	35	23	21	19	1.96
19526730--19526769	16	2.5	16	84	11	55	25	22	0	52	1.47
19531720--19531790	18	3.7	18	74	18	63	53	4	0	42	1.20
19532045--19532089	22	2.0	22	83	8	56	4	22	2	71	1.15
19532096--19532138	16	2.7	17	82	13	56	4	16	9	69	1.31
19532102--19532150	10	4.9	10	87	5	55	4	14	8	73	1.21
19532519--19532759	133	1.8	129	92	3	410	38	10	2	48	1.52
19532739--19532787	23	2.1	23	88	7	73	46	6	2	44	1.39
19539494--19539688	98	2.0	98	96	0	363	35	25	12	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79